Z. Wu
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/gcrma |
| Branch: RELEASE_3_6 |
| Last Commit: cbba460 |
| Last Changed Date: 2017-10-30 12:38:35 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:17:16 -0400 (Thu, 12 Apr 2018).
| Package 524/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| gcrma 2.50.0 Z. Wu
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: gcrma |
| Version: 2.50.0 |
| Command: rm -rf gcrma.buildbin-libdir && mkdir gcrma.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/gcrma_2.50.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=gcrma.buildbin-libdir --merge-multiarch gcrma_2.50.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL gcrma_2.50.0.zip && rm gcrma_2.50.0.tar.gz gcrma_2.50.0.zip |
| StartedAt: 2018-04-11 18:33:10 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:33:43 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 33.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf gcrma.buildbin-libdir && mkdir gcrma.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/gcrma_2.50.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=gcrma.buildbin-libdir --merge-multiarch gcrma_2.50.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL gcrma_2.50.0.zip && rm gcrma_2.50.0.tar.gz gcrma_2.50.0.zip
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install for i386
* installing *source* package 'gcrma' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c baseProfile.c -o baseProfile.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c computeAffinities.c -o computeAffinities.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c postmean.c -o postmean.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o gcrma.dll tmp.def baseProfile.o computeAffinities.o postmean.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/gcrma.buildbin-libdir/gcrma/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'gcrma'
finding HTML links ... done
affinity.spline.coefs html
bg.adjust.affinities html
bg.adjust.gcrma html
bg.parameters.ns html
compute.affinities html
fast.bkg html
gcrma html
gcrma.engine html
gcrma.engine2 html
getCDF html
justGCRMA html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'gcrma' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c baseProfile.c -o baseProfile.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c computeAffinities.c -o computeAffinities.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c postmean.c -o postmean.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o gcrma.dll tmp.def baseProfile.o computeAffinities.o postmean.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/gcrma.buildbin-libdir/gcrma/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gcrma' as gcrma_2.50.0.zip
* DONE (gcrma)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'gcrma' successfully unpacked and MD5 sums checked
In R CMD INSTALL