Package: esetVis

Version: 1.4.0

Command: rm -rf esetVis.buildbin-libdir esetVis.Rcheck && mkdir esetVis.buildbin-libdir esetVis.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=esetVis.buildbin-libdir esetVis_1.4.0.tar.gz >esetVis.Rcheck\00install.out 2>&1 && cp esetVis.Rcheck\00install.out esetVis-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=esetVis.buildbin-libdir --install="check:esetVis-install.out" --force-multiarch --no-vignettes --timings esetVis_1.4.0.tar.gz

StartedAt: 2018-04-11 23:51:03 -0400 (Wed, 11 Apr 2018)

EndedAt: 2018-04-11 23:55:19 -0400 (Wed, 11 Apr 2018)

EllapsedTime: 255.5 seconds

RetCode: 0

Status:  OK

CheckDir: esetVis.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf esetVis.buildbin-libdir esetVis.Rcheck && mkdir esetVis.buildbin-libdir esetVis.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=esetVis.buildbin-libdir esetVis_1.4.0.tar.gz >esetVis.Rcheck\00install.out 2>&1 && cp esetVis.Rcheck\00install.out esetVis-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=esetVis.buildbin-libdir --install="check:esetVis-install.out" --force-multiarch --no-vignettes --timings esetVis_1.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/esetVis.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'esetVis/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'esetVis' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'esetVis' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
esetPlotWrapper: no visible global function definition for ':='
esetPlotWrapper: no visible binding for global variable 'fill'
getMethodsInputObjectEsetVis: no visible binding for global variable
  'rowData'
getMethodsInputObjectEsetVis: no visible binding for global variable
  'colData'
getMethodsInputObjectEsetVis: no visible binding for global variable
  'assay'
getMethodsInputObjectEsetVis : <anonymous>: no visible global function
  definition for 'colData'
getMethodsInputObjectEsetVis : <anonymous>: no visible global function
  definition for 'rowData'
Undefined global functions or variables:
  := assay colData fill rowData
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
getGeneSetsForPlot 40.66   1.11   64.78
esetLda             6.53   0.11    6.64
esetPlotWrapper     5.38   0.24    5.61
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
getGeneSetsForPlot 43.46   1.09   44.54
esetLda             7.05   0.22    7.27
esetPlotWrapper     6.65   0.41    7.07
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/esetVis.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'esetVis' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'esetVis'
    finding HTML links ... done
    esetLda                                 html  
    finding level-2 HTML links ... done

    esetPlotWrapper                         html  
    esetSpectralMap                         html  
    esetTsne                                html  
    getCoordGeneSets                        html  
    getGeneSetsForPlot                      html  
    getMethodsInputObjectEsetVis            html  
    plotTopElements                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'esetVis' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'esetVis' as esetVis_1.4.0.zip
* DONE (esetVis)
In R CMD INSTALL
In R CMD INSTALL