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INSTALL report for biomaRt on tokay1

This page was generated on 2018-04-12 13:17:45 -0400 (Thu, 12 Apr 2018).

Package 133/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biomaRt 2.34.2
Mike Smith
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/biomaRt
Branch: RELEASE_3_6
Last Commit: a703091
Last Changed Date: 2018-01-19 07:56:35 -0400 (Fri, 19 Jan 2018)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: biomaRt
Version: 2.34.2
Command: rm -rf biomaRt.buildbin-libdir && mkdir biomaRt.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/biomaRt_2.34.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=biomaRt.buildbin-libdir --merge-multiarch biomaRt_2.34.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL biomaRt_2.34.2.zip && rm biomaRt_2.34.2.tar.gz biomaRt_2.34.2.zip
StartedAt: 2018-04-11 18:36:18 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:37:16 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 58.8 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   rm -rf biomaRt.buildbin-libdir && mkdir biomaRt.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/biomaRt_2.34.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=biomaRt.buildbin-libdir --merge-multiarch biomaRt_2.34.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL biomaRt_2.34.2.zip  && rm biomaRt_2.34.2.tar.gz biomaRt_2.34.2.zip
###
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install for i386

* installing *source* package 'biomaRt' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'biomaRt'
    finding HTML links ... done
    Mart-class                              html  
    NP2009code                              html  
    attributePages                          html  
    exportFASTA                             html  
    filterOptions                           html  
    filterType                              html  
    getBM                                   html  
    getBMlist                               html  
    getGene                                 html  
    getLDS                                  html  
    getSequence                             html  
    getXML                                  html  
    listAttributes                          html  
    listDatasets                            html  
    listEnsembl                             html  
    listEnsemblArchives                     html  
    listFilters                             html  
    listMarts                               html  
    select                                  html  
    useDataset                              html  
    useEnsembl                              html  
    useMart                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'biomaRt' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biomaRt' as biomaRt_2.34.2.zip
* DONE (biomaRt)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'biomaRt' successfully unpacked and MD5 sums checked
In R CMD INSTALL