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INSTALL report for affycomp on tokay1

This page was generated on 2018-04-12 13:17:14 -0400 (Thu, 12 Apr 2018).

Package 17/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
affycomp 1.54.0
Rafael A. Irizarry
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/affycomp
Branch: RELEASE_3_6
Last Commit: 65281c1
Last Changed Date: 2017-10-30 12:38:30 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: affycomp
Version: 1.54.0
Command: rm -rf affycomp.buildbin-libdir && mkdir affycomp.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/affycomp_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=affycomp.buildbin-libdir --merge-multiarch affycomp_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL affycomp_1.54.0.zip && rm affycomp_1.54.0.tar.gz affycomp_1.54.0.zip
StartedAt: 2018-04-11 18:23:18 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:24:24 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 66.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf affycomp.buildbin-libdir && mkdir affycomp.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/affycomp_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=affycomp.buildbin-libdir --merge-multiarch affycomp_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL affycomp_1.54.0.zip  && rm affycomp_1.54.0.tar.gz affycomp_1.54.0.zip
###
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100 7135k  100 7135k    0     0  74.5M      0 --:--:-- --:--:-- --:--:-- 77.4M

install for i386

* installing *source* package 'affycomp' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'affycomp'
    finding HTML links ... done
    SD                                      html  
    affycomp.compfigs.auxiliary             html  
    affycomp.figures.auxiliary              html  
    affycomp.table                          html  
    affycompPlot                            html  
    assessAll                               html  
    assessDilution                          html  
    assessSD                                html  
    assessSpikeIn                           html  
    assessSpikeIn2                          html  
    dilution.phenodata                      html  
    exprset.log                             html  
    hgu133a.spikein.phenodata               html  
    mas5.assessment                         html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsLfw6X/R.INSTALLeec6a0bd3/affycomp/man/mas5.assessment.Rd:10: missing file link 'ExpressionSet'
    readin                                  html  
    remove.hgu133a.xhyb                     html  
    spikein.phenodata                       html  
    xhyb                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'affycomp' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affycomp' as affycomp_1.54.0.zip
* DONE (affycomp)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'affycomp' successfully unpacked and MD5 sums checked
In R CMD INSTALL