Package: KEGGlincs

Version: 1.4.0

Command: rm -rf KEGGlincs.buildbin-libdir KEGGlincs.Rcheck && mkdir KEGGlincs.buildbin-libdir KEGGlincs.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGlincs.buildbin-libdir KEGGlincs_1.4.0.tar.gz >KEGGlincs.Rcheck\00install.out 2>&1 && cp KEGGlincs.Rcheck\00install.out KEGGlincs-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=KEGGlincs.buildbin-libdir --install="check:KEGGlincs-install.out" --force-multiarch --no-vignettes --timings KEGGlincs_1.4.0.tar.gz

StartedAt: 2018-04-12 00:58:55 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 01:04:48 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 353.1 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGlincs.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf KEGGlincs.buildbin-libdir KEGGlincs.Rcheck && mkdir KEGGlincs.buildbin-libdir KEGGlincs.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGlincs.buildbin-libdir KEGGlincs_1.4.0.tar.gz >KEGGlincs.Rcheck\00install.out 2>&1 && cp KEGGlincs.Rcheck\00install.out KEGGlincs-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=KEGGlincs.buildbin-libdir --install="check:KEGGlincs-install.out" --force-multiarch --no-vignettes --timings KEGGlincs_1.4.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/KEGGlincs.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGlincs/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KEGGlincs' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'KEGGlincs' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                         user system elapsed
add_edge_data           15.04   1.78   20.44
overlap_info            15.47   0.62   16.31
add_KEGG_drugs          10.42   0.31   15.96
edge_mapping_info        8.67   0.46    9.36
path_genes_by_cell_type  8.15   0.42    8.83
refine_mappings          6.59   0.16    7.15
get_graph_object         6.59   0.08    6.89
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                         user system elapsed
add_edge_data           21.79   0.56   22.61
overlap_info            16.22   0.79   17.23
add_KEGG_drugs          13.21   0.28   18.00
path_genes_by_cell_type 10.19   0.21   10.65
refine_mappings          8.56   0.30    9.10
edge_mapping_info        8.14   0.41    8.79
get_graph_object         6.66   0.10    6.98
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'KEGGlincs' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'KEGGlincs'
    finding HTML links ... done
    KEGG_lincs                              html  
    KEGGlincs                               html  
    KL_compare                              html  
    add_KEGG_drugs                          html  
    add_edge_data                           html  
    cyto_vis                                html  
    edge_mapping_info                       html  
    expand_KEGG_edges                       html  
    expand_KEGG_mappings                    html  
    generate_mappings                       html  
    get_KGML                                html  
    get_drug_table                          html  
    get_fisher_info                         html  
    get_graph_object                        html  
    keggerize_edges                         html  
    node_mapping_info                       html  
    overlap_info                            html  
    path_genes_by_cell_type                 html  
    refine_mappings                         html  
    tidy_edge                               html  
    toCytoscape                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'KEGGlincs' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGlincs' as KEGGlincs_1.4.0.zip
* DONE (KEGGlincs)
In R CMD INSTALL
In R CMD INSTALL