VJ Carey
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/GGtools |
| Branch: RELEASE_3_6 |
| Last Commit: bf79a26 |
| Last Changed Date: 2017-10-30 12:39:17 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:18:23 -0400 (Thu, 12 Apr 2018).
| Package 584/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GGtools 5.14.0 VJ Carey
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GGtools |
| Version: 5.14.0 |
| Command: rm -rf GGtools.buildbin-libdir && mkdir GGtools.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/GGtools_5.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=GGtools.buildbin-libdir --merge-multiarch GGtools_5.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL GGtools_5.14.0.zip && rm GGtools_5.14.0.tar.gz GGtools_5.14.0.zip |
| StartedAt: 2018-04-11 18:56:28 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:59:08 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 159.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf GGtools.buildbin-libdir && mkdir GGtools.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/GGtools_5.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=GGtools.buildbin-libdir --merge-multiarch GGtools_5.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL GGtools_5.14.0.zip && rm GGtools_5.14.0.tar.gz GGtools_5.14.0.zip
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install for i386
* installing *source* package 'GGtools' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'GGtools'
finding HTML links ... done
All.cis html
CisConfig-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/CisConfig-class.Rd:115: missing file link 'getSS'
EqAppr-class html
GGtools-package html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/GGtools-package.Rd:68: missing file link 'getSS'
TransConfig-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/TransConfig-class.Rd:42: missing file link 'getSS'
appraise html
b1 html
best.cis.eQTLs html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/best.cis.eQTLs.Rd:95: missing file link 'getSS'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/best.cis.eQTLs.Rd:136: missing file link 'snplocs'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/best.cis.eQTLs.Rd:196: missing file link 'getSS'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/best.cis.eQTLs.Rd:200: missing file link 'getSS'
best.trans.eQTLs html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/best.trans.eQTLs.Rd:21: missing file link 'getSS'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/best.trans.eQTLs.Rd:41: missing file link 'ffrowapply'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/best.trans.eQTLs.Rd:65: missing file link 'snplocs'
bindmaf html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/bindmaf.Rd:24: missing file link 'getSS'
cgff2dt html
cisAssoc html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/cisAssoc.Rd:26: missing file link 'TabixFile'
cisRun-class html
ciseqByCluster html
collectBest html
concatCis html
eqBox html
eqsens_dt html
eqtlTests html
eqtlTests.me html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/eqtlTests.me.Rd:49: missing file link 'mclapply'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/eqtlTests.me.Rd:84: missing file link 'regressOut'
eqtlTestsManager-class html
ex html
getCisMap html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/getCisMap.Rd:31: missing file link 'snplocs'
gffprocess html
gwSnpTests html
hmm878 html
pifdr html
qqhex html
richNull html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/richNull.Rd:33: missing file link 'getSS'
sampsInVCF html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/sampsInVCF.Rd:17: missing file link 'TabixFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/sampsInVCF.Rd:39: missing file link 'TabixFile'
scoresCis html
sensanal html
sensiCisInput-class html
sensiCisOutput-class html
simpleTiling html
snplocsDefault html
strMultPop html
transManager-class html
transScores html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/transScores.Rd:85: missing file link 'getSS'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/transScores.Rd:88: missing file link 'getSS'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpu0EuBI/R.INSTALL14b4584221f8/GGtools/man/transScores.Rd:91: missing file link 'ffrowapply'
transTab html
transeqByCluster html
vcf2sm html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'GGtools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GGtools' as GGtools_5.14.0.zip
* DONE (GGtools)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'GGtools' successfully unpacked and MD5 sums checked
In R CMD INSTALL