Simon Anders
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/DESeq |
| Branch: RELEASE_3_6 |
| Last Commit: 90c93d9 |
| Last Changed Date: 2017-10-30 12:39:28 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:19:58 -0400 (Thu, 12 Apr 2018).
| Package 356/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DESeq 1.30.0 Simon Anders
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: DESeq |
| Version: 1.30.0 |
| Command: rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/DESeq_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=DESeq.buildbin-libdir --merge-multiarch DESeq_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL DESeq_1.30.0.zip && rm DESeq_1.30.0.tar.gz DESeq_1.30.0.zip |
| StartedAt: 2018-04-11 18:34:53 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:35:49 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 55.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/DESeq_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=DESeq.buildbin-libdir --merge-multiarch DESeq_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL DESeq_1.30.0.zip && rm DESeq_1.30.0.tar.gz DESeq_1.30.0.zip
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install for i386
* installing *source* package 'DESeq' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
double esttotalperlength = total/2;
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o DESeq.dll tmp.def pval.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/DESeq.buildbin-libdir/DESeq/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'DESeq'
finding HTML links ... done
CountDataSet-class html
adjustScvForBias html
conditions html
counts html
dispTable html
estimateDispersions html
estimateSizeFactors html
estimateSizeFactorsForMatrix html
estimateVarianceFunctions html
fitInfo html
fitNbinomGLMs html
fitNbinomGLMsForMatrix html
getBaseMeansAndVariances html
getVarianceStabilizedData html
makeExampleCountDataSet html
nbinomGLMTest html
nbinomTest html
nbinomTestForMatrices html
nbkd.sf html
newCountDataSet html
newCountDataSetFromHTSeqCount html
plotDispEsts html
plotMA html
plotPCA html
residualsEcdfPlot html
scvPlot html
sizeFactors html
varianceFitDiagnostics html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'DESeq' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
double esttotalperlength = total/2;
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o DESeq.dll tmp.def pval.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/DESeq.buildbin-libdir/DESeq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DESeq' as DESeq_1.30.0.zip
* DONE (DESeq)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'DESeq' successfully unpacked and MD5 sums checked
In R CMD INSTALL