Package: ASpli

Version: 1.4.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings ASpli_1.4.0.tar.gz

StartedAt: 2018-04-12 00:33:25 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 00:39:18 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 352.5 seconds

RetCode: 0

Status:  OK

CheckDir: ASpli.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings ASpli_1.4.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/ASpli.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ASpli/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ASpli’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ASpli’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
plotGenomicRegions  13.666  0.085  13.946
ASpli-package       10.885  0.091  11.106
plotBins             8.930  0.039   9.067
AsDiscover-methods   7.617  0.092   7.795
mergeBinDUAS-method  6.039  0.029   6.129
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘ASpli’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ASpli)

name	user	system	elapsed
ASpli-package	10.885	0.091	11.106
AsDiscover-methods	7.617	0.092	7.795
DUreport	3.918	0.019	3.985
DUreportBinSplice-method	4.073	0.019	4.389
acc_AS	0.022	0.001	0.022
acc_DU	0.021	0.000	0.023
acc_counts	0.020	0.001	0.026
acc_features	0.318	0.001	0.361
binGenome	2.342	0.019	2.524
containsJunctions-function	4.097	0.020	4.397
example_data	0.465	0.009	0.514
filterDU-method	4.064	0.018	4.361
getConditions-function	0.007	0.000	0.007
junctionDUreport	3.789	0.020	3.879
loadBAM	0.122	0.002	0.125
mergeBinDUAS-method	6.039	0.029	6.129
plotBins	8.930	0.039	9.067
plotGenomicRegions	13.666	0.085	13.946
rds	4.367	0.020	4.449
readCounts	3.767	0.018	3.843
subset-methods	4.809	0.020	4.884