BioC 3.3: BUILD report for stepwiseCM on oaxaca

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data stepwiseCM
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* checking for file ‘stepwiseCM/DESCRIPTION’ ... OK
* preparing ‘stepwiseCM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: randomForest
randomForest 4.6-12
Type rfNews() to see new features/changes/bug fixes.
Loading required package: MAclinical
Loading required package: party
Loading required package: grid
Loading required package: mvtnorm
Loading required package: modeltools
Loading required package: stats4
Loading required package: strucchange
Loading required package: zoo

Attaching package: ‘zoo’

The following objects are masked from ‘package:base’:

    as.Date, as.Date.numeric

Loading required package: sandwich
Loading required package: plsgenomics
Loading required package: MASS
Loading required package: boot
Loading required package: parallel
Loading required package: st
Loading required package: sda
Loading required package: entropy
Loading required package: corpcor
Loading required package: fdrtool
Loading required package: e1071
Loading required package: tspair
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from ‘package:randomForest’:

    combine

The following objects are masked from ‘package:stats’:

    IQR, mad, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: pamr
Loading required package: cluster
Loading required package: survival

Attaching package: ‘survival’

The following object is masked from ‘package:boot’:

    aml

Loading required package: snowfall
Loading required package: snow

Attaching package: ‘snow’

The following objects are masked from ‘package:BiocGenerics’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, clusterSplit, parApply, parCapply,
    parLapply, parRapply, parSapply

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, clusterSplit, makeCluster, parApply,
    parCapply, parLapply, parRapply, parSapply, splitIndices,
    stopCluster

Loading required package: glmpath
Loading required package: penalized
Welcome to penalized. For extended examples, see vignette("penalized").

Error: processing vignette 'stepwiseCM.Rnw' failed with diagnostics:
 chunk 2 (label = chunk2) 
Error in randomForest.default(x = t(train[, -index]), y = as.factor(train.label[-index]),  : 
  Need at least two classes to do classification.
Execution halted
BioC 3.3: BUILD report for stepwiseCM on oaxaca

Summary

Command output
