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BioC 3.3: BUILD BIN report for ddgraph on oaxaca

This page was generated on 2016-10-13 12:58:20 -0700 (Thu, 13 Oct 2016).

Package 279/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ddgraph 1.16.0
Robert Stojnic
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/ddgraph
Last Changed Rev: 117079 / Revision: 122332
Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: ddgraph
Version: 1.16.0
Command: rm -rf ddgraph.buildbin-libdir && mkdir ddgraph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ddgraph_1.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ddgraph.buildbin-libdir
StartedAt: 2016-10-13 07:31:22 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 07:31:33 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 11.1 seconds
RetCode: 0
Status:  OK 
PackageFile: ddgraph_1.16.0.tgz
PackageFileSize: 761.2 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ddgraph.buildbin-libdir && mkdir ddgraph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ddgraph_1.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ddgraph.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ddgraph.buildbin-libdir ddgraph_1.16.0.tar.gz'
>>>>>>> 

* installing *source* package ‘ddgraph’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c mcX2cloop.cpp -o mcX2cloop.o
mcX2cloop.cpp:14:2: warning: unused label 'Rcpp' [-Wunused-label]
        Rcpp:NumericVector res(iB);
        ^˜˜˜˜
1 warning generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ddgraph.so mcX2cloop.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.3-bioc/meat/ddgraph.buildbin-libdir/ddgraph/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ddgraph)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ddgraph.buildbin-libdir/ddgraph/libs//ddgraph.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "ddgraph.buildbin-libdir/ddgraph/libs//ddgraph.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "ddgraph.buildbin-libdir/ddgraph/libs//ddgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "ddgraph.buildbin-libdir/ddgraph/libs//ddgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "ddgraph.buildbin-libdir/ddgraph/libs//ddgraph.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "ddgraph.buildbin-libdir/ddgraph/libs//ddgraph.so"