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BioC 3.3: BUILD BIN report for AnalysisPageServer on oaxaca

This page was generated on 2016-10-13 13:01:11 -0700 (Thu, 13 Oct 2016).

Package 40/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnalysisPageServer 1.6.2
Brad Friedman
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/AnalysisPageServer
Last Changed Rev: 117513 / Revision: 122332
Last Changed Date: 2016-05-15 13:18:19 -0700 (Sun, 15 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: AnalysisPageServer
Version: 1.6.2
Command: rm -rf AnalysisPageServer.buildbin-libdir && mkdir AnalysisPageServer.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh AnalysisPageServer_1.6.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R AnalysisPageServer.buildbin-libdir
StartedAt: 2016-10-13 07:23:11 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 07:23:31 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 20.8 seconds
RetCode: 0
Status:  OK 
PackageFile: AnalysisPageServer_1.6.2.tgz
PackageFileSize: 20.1 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf AnalysisPageServer.buildbin-libdir && mkdir AnalysisPageServer.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh AnalysisPageServer_1.6.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R AnalysisPageServer.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=AnalysisPageServer.buildbin-libdir AnalysisPageServer_1.6.2.tar.gz'
>>>>>>> 

* installing *source* package ‘AnalysisPageServer’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c AnalysisPageSVG.cpp -o AnalysisPageSVG.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c R_init_AnalysisPageServer.cpp -o R_init_AnalysisPageServer.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c SearchReplace2.cpp -o SearchReplace2.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c catch.c -o catch.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c cor.cpp -o cor.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c tinyxml2.cpp -o tinyxml2.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o AnalysisPageServer.so AnalysisPageSVG.o R_init_AnalysisPageServer.o SearchReplace2.o catch.o cor.o tinyxml2.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.3-bioc/meat/AnalysisPageServer.buildbin-libdir/AnalysisPageServer/libs
** R
** inst
** preparing package for lazy loading
While loading AnalysisPageServer: urlEncode not found, providing a pure R implementation
While loading AnalysisPageServer: urlDecode not found, providing a pure R implementation
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (AnalysisPageServer)


>>>>>>> 
>>>>>>> FIXING LINKS FOR AnalysisPageServer.buildbin-libdir/AnalysisPageServer/libs//AnalysisPageServer.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "AnalysisPageServer.buildbin-libdir/AnalysisPageServer/libs//AnalysisPageServer.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "AnalysisPageServer.buildbin-libdir/AnalysisPageServer/libs//AnalysisPageServer.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "AnalysisPageServer.buildbin-libdir/AnalysisPageServer/libs//AnalysisPageServer.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "AnalysisPageServer.buildbin-libdir/AnalysisPageServer/libs//AnalysisPageServer.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "AnalysisPageServer.buildbin-libdir/AnalysisPageServer/libs//AnalysisPageServer.so"