Britta Velten
| Snapshot Date: 2026-02-25 13:40 -0500 (Wed, 25 Feb 2026) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: devel |
| git_last_commit: 95474d7 |
| git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025) |
| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-26 11:32 -0500 (Thu, 26 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4877 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 926/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.27.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| See other builds for graper in R Universe. | ||||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.27.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz |
| StartedAt: 2026-02-26 00:22:45 -0500 (Thu, 26 Feb 2026) |
| EndedAt: 2026-02-26 00:24:17 -0500 (Thu, 26 Feb 2026) |
| EllapsedTime: 92.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.27.0’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c fit_graper.cpp -o fit_graper.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.23-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.23-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.23-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.23-bioc/R/site-library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-886.33
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-570.469
ELB improved by 315.861
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-513.863
ELB improved by 56.6053
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-479.511
ELB improved by 34.3526
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.623
ELB improved by 14.8875
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.266
ELB improved by 6.3569
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.493
ELB improved by 3.77295
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.458
ELB improved by 3.03536
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.645
ELB improved by 2.81294
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.855
ELB improved by 2.79018
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.001
ELB improved by 2.85357
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.068
ELB improved by 2.93305
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.115
ELB improved by 2.95362
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.289
ELB improved by 2.82595
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.793
ELB improved by 2.49565
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.778
ELB improved by 2.01529
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.262
ELB improved by 1.51604
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.161
ELB improved by 1.10031
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.366
ELB improved by 0.795041
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.785
ELB improved by 0.58093
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.354
ELB improved by 0.431385
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.027
ELB improved by 0.327004
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.773
ELB improved by 0.254527
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.568
ELB improved by 0.204122
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.4
ELB improved by 0.168496
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.257
ELB improved by 0.142587
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.134
ELB improved by 0.123102
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.026
ELB improved by 0.107964
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.93
ELB improved by 0.0958688
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.844
ELB improved by 0.0859774
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.767
ELB improved by 0.0777343
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.696
ELB improved by 0.0707596
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.631
ELB improved by 0.0647857
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.572
ELB improved by 0.0596192
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.516
ELB improved by 0.0551167
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.465
ELB improved by 0.05117
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.418
ELB improved by 0.0476953
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.373
ELB improved by 0.0446269
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.331
ELB improved by 0.0419124
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.292
ELB improved by 0.0395095
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.254
ELB improved by 0.0373835
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.219
ELB improved by 0.0355061
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.185
ELB improved by 0.0338539
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.152
ELB improved by 0.0324078
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.121
ELB improved by 0.0311519
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.091
ELB improved by 0.0300735
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.062
ELB improved by 0.0291625
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.034
ELB improved by 0.0284114
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.006
ELB improved by 0.0278146
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.978
ELB improved by 0.0273686
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.951
ELB improved by 0.0270721
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.924
ELB improved by 0.0269255
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.897
ELB improved by 0.0269315
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.87
ELB improved by 0.0270946
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.843
ELB improved by 0.0274216
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.815
ELB improved by 0.0279219
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.786
ELB improved by 0.0286071
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.757
ELB improved by 0.0294921
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.726
ELB improved by 0.030595
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.694
ELB improved by 0.0319376
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.661
ELB improved by 0.0335462
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.625
ELB improved by 0.0354519
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.588
ELB improved by 0.0376916
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.547
ELB improved by 0.0403087
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.504
ELB improved by 0.0433543
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.457
ELB improved by 0.046888
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.406
ELB improved by 0.0509793
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.35
ELB improved by 0.0557089
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.289
ELB improved by 0.0611696
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.222
ELB improved by 0.0674675
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.147
ELB improved by 0.0747227
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.064
ELB improved by 0.0830682
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.971
ELB improved by 0.0926485
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.868
ELB improved by 0.103613
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.752
ELB improved by 0.116105
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.621
ELB improved by 0.130245
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.475
ELB improved by 0.146098
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.312
ELB improved by 0.163636
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.129
ELB improved by 0.182685
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.926
ELB improved by 0.202884
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.702
ELB improved by 0.223651
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.458
ELB improved by 0.24421
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.195
ELB improved by 0.263713
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.913
ELB improved by 0.281542
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.615
ELB improved by 0.297907
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.3
ELB improved by 0.314745
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.964
ELB improved by 0.336411
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.596
ELB improved by 0.368001
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.19
ELB improved by 0.406291
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.763
ELB improved by 0.426565
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.362
ELB improved by 0.400803
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.022
ELB improved by 0.340015
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.747
ELB improved by 0.275286
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.526
ELB improved by 0.221226
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.347
ELB improved by 0.178319
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.204
ELB improved by 0.14343
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.09
ELB improved by 0.114184
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416
ELB improved by 0.0895904
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.931
ELB improved by 0.0693342
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.878
ELB improved by 0.0531889
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.837
ELB improved by 0.0408006
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.805
ELB improved by 0.0316431
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.78
ELB improved by 0.0250766
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.76
ELB improved by 0.020459
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.742
ELB improved by 0.0172373
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.727
ELB improved by 0.0149845
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.714
ELB improved by 0.0133938
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.702
ELB improved by 0.0122547
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.69
ELB improved by 0.0114258
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.68
ELB improved by 0.0108133
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.669
ELB improved by 0.0103545
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.659
ELB improved by 0.0100077
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.649
ELB improved by 0.00974467
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-848.513
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-529.001
ELB improved by 319.512
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-478.233
ELB improved by 50.7676
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.945
ELB improved by 24.2881
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.016
ELB improved by 10.9289
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.213
ELB improved by 6.80352
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.304
ELB improved by 5.90906
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.689
ELB improved by 6.61462
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.716
ELB improved by 7.97321
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.048
ELB improved by 8.66796
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.763
ELB improved by 7.2847
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.11
ELB improved by 4.65351
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.432
ELB improved by 2.67726
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.748
ELB improved by 1.68398
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.538
ELB improved by 1.21002
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.584
ELB improved by 0.954173
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.79
ELB improved by 0.794111
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.109
ELB improved by 0.681019
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.515
ELB improved by 0.594263
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.99
ELB improved by 0.524998
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.52
ELB improved by 0.469601
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.093
ELB improved by 0.426877
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.696
ELB improved by 0.397181
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.313
ELB improved by 0.382925
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.923
ELB improved by 0.390375
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.493
ELB improved by 0.430117
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.994
ELB improved by 0.49927
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.455
ELB improved by 0.538321
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.959
ELB improved by 0.496448
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.531
ELB improved by 0.427464
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.157
ELB improved by 0.374381
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.82
ELB improved by 0.337189
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.51
ELB improved by 0.310109
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.22
ELB improved by 0.289879
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.945
ELB improved by 0.274669
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.682
ELB improved by 0.263283
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.427
ELB improved by 0.254867
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.178
ELB improved by 0.248743
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.934
ELB improved by 0.244302
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.693
ELB improved by 0.240927
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.455
ELB improved by 0.237976
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.22
ELB improved by 0.234818
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.989
ELB improved by 0.230932
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.763
ELB improved by 0.226107
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.542
ELB improved by 0.220846
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.325
ELB improved by 0.217218
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.104
ELB improved by 0.22084
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.858
ELB improved by 0.245831
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.536
ELB improved by 0.322834
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.068
ELB improved by 0.467338
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.526
ELB improved by 0.542306
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.075
ELB improved by 0.451215
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.728
ELB improved by 0.346246
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.422
ELB improved by 0.306764
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.072
ELB improved by 0.349766
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.599
ELB improved by 0.472551
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.051
ELB improved by 0.548087
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.564
ELB improved by 0.487546
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.11
ELB improved by 0.454187
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.654
ELB improved by 0.455595
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.281
ELB improved by 0.373357
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-371.045
ELB improved by 0.2355
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.91
ELB improved by 0.135154
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.83
ELB improved by 0.0799609
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.781
ELB improved by 0.0494125
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.749
ELB improved by 0.031352
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.729
ELB improved by 0.0204536
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.715
ELB improved by 0.0139813
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.705
ELB improved by 0.0101961
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.697
ELB improved by 0.00796218
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-866.023
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-566.045
ELB improved by 299.979
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-506.688
ELB improved by 59.3572
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-470.592
ELB improved by 36.0958
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.686
ELB improved by 16.9057
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.97
ELB improved by 7.71642
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.076
ELB improved by 4.89426
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.785
ELB improved by 4.29002
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.347
ELB improved by 4.43892
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.376
ELB improved by 4.97105
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.844
ELB improved by 5.53133
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.341
ELB improved by 5.50354
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.82
ELB improved by 4.52031
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.759
ELB improved by 3.06134
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.893
ELB improved by 1.86634
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.751
ELB improved by 1.1419
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.006
ELB improved by 0.744539
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.481
ELB improved by 0.52508
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.085
ELB improved by 0.396633
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.769
ELB improved by 0.315301
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.509
ELB improved by 0.259817
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.29
ELB improved by 0.219683
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.1
ELB improved by 0.18939
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.935
ELB improved by 0.165822
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.787
ELB improved by 0.147082
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.655
ELB improved by 0.131938
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.536
ELB improved by 0.119553
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.427
ELB improved by 0.109331
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.326
ELB improved by 0.100839
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.232
ELB improved by 0.0937484
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.144
ELB improved by 0.0878121
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.061
ELB improved by 0.0828371
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.983
ELB improved by 0.0786727
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.907
ELB improved by 0.0752011
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.835
ELB improved by 0.0723297
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.765
ELB improved by 0.0699868
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.697
ELB improved by 0.0681175
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.63
ELB improved by 0.0666815
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.565
ELB improved by 0.0656513
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.5
ELB improved by 0.0650111
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.435
ELB improved by 0.064756
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.37
ELB improved by 0.064892
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.305
ELB improved by 0.0654361
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.238
ELB improved by 0.066417
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.17
ELB improved by 0.067876
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.1
ELB improved by 0.069868
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.028
ELB improved by 0.0724633
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.952
ELB improved by 0.0757488
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.872
ELB improved by 0.0798291
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.788
ELB improved by 0.0848274
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.697
ELB improved by 0.0908842
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.599
ELB improved by 0.0981541
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.492
ELB improved by 0.106798
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.375
ELB improved by 0.116971
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.246
ELB improved by 0.128804
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.104
ELB improved by 0.142379
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.946
ELB improved by 0.157701
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.771
ELB improved by 0.174671
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.578
ELB improved by 0.193069
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.366
ELB improved by 0.212555
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.133
ELB improved by 0.232701
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.88
ELB improved by 0.25305
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.607
ELB improved by 0.273205
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.314
ELB improved by 0.292887
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.002
ELB improved by 0.311866
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.672
ELB improved by 0.329604
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.328
ELB improved by 0.344595
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.974
ELB improved by 0.353869
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.62
ELB improved by 0.353634
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.279
ELB improved by 0.341404
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.961
ELB improved by 0.318019
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.673
ELB improved by 0.287536
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.418
ELB improved by 0.255157
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.193
ELB improved by 0.225104
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.993
ELB improved by 0.199809
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.812
ELB improved by 0.180773
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.641
ELB improved by 0.171061
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.462
ELB improved by 0.179074
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.24
ELB improved by 0.221794
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.927
ELB improved by 0.313116
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.517
ELB improved by 0.41028
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.083
ELB improved by 0.434311
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.663
ELB improved by 0.419259
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.233
ELB improved by 0.430633
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.702
ELB improved by 0.531337
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.917
ELB improved by 0.784721
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.02
ELB improved by 0.897135
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.11
ELB improved by 0.909317
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.242
ELB improved by 0.867979
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.696
ELB improved by 0.546446
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.445
ELB improved by 0.250933
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.334
ELB improved by 0.1113
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.278
ELB improved by 0.0557988
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.244
ELB improved by 0.0334389
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.221
ELB improved by 0.0236145
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.202
ELB improved by 0.0186691
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.186
ELB improved by 0.0157507
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.173
ELB improved by 0.013763
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.16
ELB improved by 0.0122608
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.149
ELB improved by 0.0110478
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.139
ELB improved by 0.0100291
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.13
ELB improved by 0.0091533
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-892.267
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-582.708
ELB improved by 309.559
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-524.156
ELB improved by 58.5517
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-489.868
ELB improved by 34.2882
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.097
ELB improved by 15.7716
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.11
ELB improved by 7.98664
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.967
ELB improved by 5.14329
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.793
ELB improved by 4.17378
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.946
ELB improved by 3.84736
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.312
ELB improved by 3.63336
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.006
ELB improved by 3.30616
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.198
ELB improved by 2.8082
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.998
ELB improved by 2.19965
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.372
ELB improved by 1.62603
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.173
ELB improved by 1.1989
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.253
ELB improved by 0.920596
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.518
ELB improved by 0.734675
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.927
ELB improved by 0.591279
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.455
ELB improved by 0.471285
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.081
ELB improved by 0.374542
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.78
ELB improved by 0.3014
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.532
ELB improved by 0.247812
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.323
ELB improved by 0.208309
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.145
ELB improved by 0.178398
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.99
ELB improved by 0.155038
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.854
ELB improved by 0.136302
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.733
ELB improved by 0.120965
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.624
ELB improved by 0.10822
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.527
ELB improved by 0.0975097
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.439
ELB improved by 0.0884312
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.358
ELB improved by 0.0806835
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.284
ELB improved by 0.0740356
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.216
ELB improved by 0.0683068
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.152
ELB improved by 0.0633537
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.093
ELB improved by 0.0590611
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.038
ELB improved by 0.0553352
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.986
ELB improved by 0.0520997
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.936
ELB improved by 0.0492913
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.89
ELB improved by 0.0468577
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.845
ELB improved by 0.0447553
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.802
ELB improved by 0.0429476
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.76
ELB improved by 0.0414039
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.72
ELB improved by 0.0400983
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.681
ELB improved by 0.0390089
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.643
ELB improved by 0.0381173
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.606
ELB improved by 0.037408
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.569
ELB improved by 0.0368677
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.532
ELB improved by 0.0364855
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.496
ELB improved by 0.0362522
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.46
ELB improved by 0.0361602
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.424
ELB improved by 0.0362035
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.387
ELB improved by 0.0363773
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.351
ELB improved by 0.0366781
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.314
ELB improved by 0.0371034
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.276
ELB improved by 0.0376519
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.238
ELB improved by 0.0383235
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.199
ELB improved by 0.0391191
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.159
ELB improved by 0.0400408
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.117
ELB improved by 0.0410919
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.075
ELB improved by 0.0422771
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.032
ELB improved by 0.0436024
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.986
ELB improved by 0.0450756
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.94
ELB improved by 0.0467058
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.891
ELB improved by 0.0485044
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.841
ELB improved by 0.0504844
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.788
ELB improved by 0.0526607
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.733
ELB improved by 0.0550501
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.675
ELB improved by 0.0576708
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.615
ELB improved by 0.0605419
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.551
ELB improved by 0.0636824
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.484
ELB improved by 0.0671097
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.413
ELB improved by 0.0708374
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.338
ELB improved by 0.0748723
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.259
ELB improved by 0.0792109
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.175
ELB improved by 0.0838349
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.087
ELB improved by 0.0887063
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.993
ELB improved by 0.0937625
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.894
ELB improved by 0.098912
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.79
ELB improved by 0.104032
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.681
ELB improved by 0.108966
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.567
ELB improved by 0.113532
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.45
ELB improved by 0.117523
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.329
ELB improved by 0.120725
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.206
ELB improved by 0.122928
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.082
ELB improved by 0.123946
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.959
ELB improved by 0.123641
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.837
ELB improved by 0.121935
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.718
ELB improved by 0.118828
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.603
ELB improved by 0.114396
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.495
ELB improved by 0.108792
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.392
ELB improved by 0.102224
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.298
ELB improved by 0.0949409
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.21
ELB improved by 0.0872072
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.131
ELB improved by 0.0792808
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.06
ELB improved by 0.0713973
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.996
ELB improved by 0.0637568
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.939
ELB improved by 0.0565173
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.89
ELB improved by 0.049792
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.846
ELB improved by 0.0436518
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.808
ELB improved by 0.0381296
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.775
ELB improved by 0.0332275
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.746
ELB improved by 0.0289237
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.72
ELB improved by 0.0251804
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.698
ELB improved by 0.0219492
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.679
ELB improved by 0.0191774
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.663
ELB improved by 0.0168111
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.648
ELB improved by 0.0147982
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.635
ELB improved by 0.0130904
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.623
ELB improved by 0.0116437
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.613
ELB improved by 0.010419
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.603
ELB improved by 0.0093824
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.383 0.193 2.562
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.052 | 0.022 | 0.076 | |
| getPIPs | 0.053 | 0.014 | 0.066 | |
| graper | 0.089 | 0.020 | 0.109 | |
| makeExampleData | 0.011 | 0.001 | 0.012 | |
| makeExampleDataWithUnequalGroups | 0.009 | 0.005 | 0.014 | |
| plotELBO | 0.365 | 0.068 | 0.433 | |
| plotGroupPenalties | 1.168 | 0.093 | 1.261 | |
| plotPosterior | 0.679 | 0.022 | 0.702 | |
| predict.graper | 2.069 | 0.083 | 2.151 | |
| print.graper | 0.048 | 0.016 | 0.066 | |