Back to Long Tests report for BioC 3.22 |
This page was generated on 2025-08-09 23:55 -0400 (Sat, 09 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4553 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 5/29 | Hostname | OS / Arch | CHECK | |||||||
biodbChebi 1.15.1 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | |||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ||||||||
To the developers/maintainers of the biodbChebi package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: biodbChebi |
Version: 1.15.1 |
Command: F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz |
StartedAt: 2025-08-09 16:02:49 -0400 (Sat, 09 Aug 2025) |
EndedAt: 2025-08-09 16:04:53 -0400 (Sat, 09 Aug 2025) |
EllapsedTime: 124.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: biodbChebi.Rcheck |
Warnings: 0 |
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # Script needed to run testthat automatically from ‘R CMD check’. See > # testthat::test_dir documentation. > library(testthat) > library(biodbChebi) > Sys.setenv(TESTTHAT_REPORTER="summary") > Sys.setenv(BIODB_LOG_DST="console") > test_check("biodbChebi") biodb.INFO [2025-08-09 16:03:30.737][biodb::testContext] biodb.INFO [2025-08-09 16:03:30.740][biodb::testContext] ******************************************************************************** biodb.INFO [2025-08-09 16:03:30.741][biodb::testContext] Test context - Generic long tests biodb.INFO [2025-08-09 16:03:30.743][biodb::testContext] ******************************************************************************** biodb.INFO [2025-08-09 16:03:30.744][biodb::testContext] biodb.INFO [2025-08-09 16:03:30.751][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1. biodb.DEBUG[2025-08-09 16:03:30.754][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.22-bioc/R/library/biodb/definitions.yml". biodb.DEBUG[2025-08-09 16:03:30.790][notifyObservers] Notify observers for notifyNewObservers. biodb.DEBUG[2025-08-09 16:03:30.792][self$getConfig()$define] Define config key allow.huge.downloads. biodb.DEBUG[2025-08-09 16:03:30.793][self$set] Set key allow.huge.downloads to TRUE. biodb.DEBUG[2025-08-09 16:03:30.804][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.807][self$getConfig()$define] Define config key autoload.extra.pkgs. biodb.DEBUG[2025-08-09 16:03:30.823][self$set] Set key autoload.extra.pkgs to TRUE. biodb.DEBUG[2025-08-09 16:03:30.824][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.827][self$getConfig()$define] Define config key cache.all.requests. biodb.DEBUG[2025-08-09 16:03:30.828][self$set] Set key cache.all.requests to TRUE. biodb.DEBUG[2025-08-09 16:03:30.829][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.833][self$getConfig()$define] Define config key cache.directory. biodb.DEBUG[2025-08-09 16:03:30.834][self$getConfig()$define] Define config key cache.read.only. biodb.DEBUG[2025-08-09 16:03:30.835][self$set] Set key cache.read.only to FALSE. biodb.DEBUG[2025-08-09 16:03:30.836][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.839][self$getConfig()$define] Define config key cache.subfolders. biodb.DEBUG[2025-08-09 16:03:30.841][self$getConfig()$define] Define config key cache.system. biodb.DEBUG[2025-08-09 16:03:30.842][self$set] Set key cache.system to TRUE. biodb.DEBUG[2025-08-09 16:03:30.843][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.846][self$getConfig()$define] Define config key use.cache.for.local.db. biodb.DEBUG[2025-08-09 16:03:30.847][self$set] Set key use.cache.for.local.db to FALSE. biodb.DEBUG[2025-08-09 16:03:30.849][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.852][self$getConfig()$define] Define config key dwnld.chunk.size. biodb.DEBUG[2025-08-09 16:03:30.853][self$getConfig()$define] Define config key dwnld.timeout. biodb.DEBUG[2025-08-09 16:03:30.854][self$set] Set key dwnld.timeout to 3600. biodb.DEBUG[2025-08-09 16:03:30.855][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.859][self$getConfig()$define] Define config key compute.fields. biodb.DEBUG[2025-08-09 16:03:30.860][self$set] Set key compute.fields to TRUE. biodb.DEBUG[2025-08-09 16:03:30.861][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.864][self$getConfig()$define] Define config key factory.cache. biodb.DEBUG[2025-08-09 16:03:30.865][self$getConfig()$define] Define config key force.locale. biodb.DEBUG[2025-08-09 16:03:30.867][self$set] Set key force.locale to TRUE. biodb.DEBUG[2025-08-09 16:03:30.868][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.871][self$getConfig()$define] Define config key longterm.cache.subfolder. biodb.DEBUG[2025-08-09 16:03:30.872][self$getConfig()$define] Define config key msg.caution.lvl. biodb.DEBUG[2025-08-09 16:03:30.873][self$getConfig()$define] Define config key msg.debug.lvl. biodb.DEBUG[2025-08-09 16:03:30.875][self$getConfig()$define] Define config key msg.info.lvl. biodb.DEBUG[2025-08-09 16:03:30.876][self$getConfig()$define] Define config key multival.field.sep. biodb.DEBUG[2025-08-09 16:03:30.877][self$set] Set key multival.field.sep to ";". biodb.DEBUG[2025-08-09 16:03:30.878][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.881][self$getConfig()$define] Define config key intra.field.name.sep. biodb.DEBUG[2025-08-09 16:03:30.882][self$set] Set key intra.field.name.sep to ".". biodb.DEBUG[2025-08-09 16:03:30.884][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.887][self$getConfig()$define] Define config key entries.sep. biodb.DEBUG[2025-08-09 16:03:30.888][self$set] Set key entries.sep to "|". biodb.DEBUG[2025-08-09 16:03:30.889][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.892][self$getConfig()$define] Define config key offline. biodb.DEBUG[2025-08-09 16:03:30.894][self$set] Set key offline to FALSE. biodb.DEBUG[2025-08-09 16:03:30.895][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.898][self$getConfig()$define] Define config key persistent.cache.impl. biodb.DEBUG[2025-08-09 16:03:30.899][self$getConfig()$define] Define config key proton.mass. biodb.DEBUG[2025-08-09 16:03:30.900][self$set] Set key proton.mass to 1.0072765. biodb.DEBUG[2025-08-09 16:03:30.901][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.905][self$getConfig()$define] Define config key shortterm.cache.subfolder. biodb.DEBUG[2025-08-09 16:03:30.906][self$getConfig()$define] Define config key svn.binary.path. biodb.DEBUG[2025-08-09 16:03:30.909][self$set] Set key svn.binary.path to "". biodb.DEBUG[2025-08-09 16:03:30.910][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.914][self$getConfig()$define] Define config key test.functions. biodb.DEBUG[2025-08-09 16:03:30.915][self$getConfig()$define] Define config key useragent. biodb.DEBUG[2025-08-09 16:03:30.916][self$set] Set key useragent to "R Bioconductor biodb library.". biodb.DEBUG[2025-08-09 16:03:30.917][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:30.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:30.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:30.923][self$getDbsInfo()$define] Define connector comp.csv.file. biodb.DEBUG[2025-08-09 16:03:30.950][self$setPropertyValue] Setting property "compound.db" to "TRUE". biodb.DEBUG[2025-08-09 16:03:30.964][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.". biodb.DEBUG[2025-08-09 16:03:30.965][self$setPropertyValue] Setting property "disabled" to "FALSE". biodb.DEBUG[2025-08-09 16:03:30.967][self$setPropertyValue] Setting property "disabling.reason" to "". biodb.DEBUG[2025-08-09 16:03:30.968][self$setPropertyValue] Setting property "downloadable" to "FALSE". biodb.DEBUG[2025-08-09 16:03:30.969][self$setPropertyValue] Setting property "dwnld.ext" to "NA". biodb.DEBUG[2025-08-09 16:03:30.970][self$setPropertyValue] Setting property "editable" to "TRUE". biodb.DEBUG[2025-08-09 16:03:30.971][self$setPropertyValue] Setting property "entry.content.encoding" to "NA". biodb.DEBUG[2025-08-09 16:03:30.973][self$setPropertyValue] Setting property "entry.content.type" to "tsv". biodb.DEBUG[2025-08-09 16:03:30.974][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")". biodb.DEBUG[2025-08-09 16:03:30.975][self$setPropertyValue] Setting property "mass.db" to "FALSE". biodb.DEBUG[2025-08-09 16:03:30.976][self$setPropertyValue] Setting property "name" to "Compound CSV File". biodb.DEBUG[2025-08-09 16:03:30.977][self$setPropertyValue] Setting property "package" to "biodb". biodb.DEBUG[2025-08-09 16:03:30.979][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>". biodb.DEBUG[2025-08-09 16:03:30.980][self$setPropertyValue] Setting property "remote" to "FALSE". biodb.DEBUG[2025-08-09 16:03:30.981][self$setPropertyValue] Setting property "searchable.fields" to "name". biodb.DEBUG[2025-08-09 16:03:30.981][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass". biodb.DEBUG[2025-08-09 16:03:30.981][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass". biodb.DEBUG[2025-08-09 16:03:30.981][self$setPropertyValue] Setting property "searchable.fields" to "average.mass". biodb.DEBUG[2025-08-09 16:03:30.981][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass". biodb.DEBUG[2025-08-09 16:03:30.982][self$setPropertyValue] Setting property "scheduler.n" to "1". biodb.DEBUG[2025-08-09 16:03:30.983][self$setPropertyValue] Notifying observers about frequency change. biodb.DEBUG[2025-08-09 16:03:30.985][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated. biodb.DEBUG[2025-08-09 16:03:30.986][self$setPropertyValue] Setting property "scheduler.t" to "1". biodb.DEBUG[2025-08-09 16:03:30.987][self$setPropertyValue] Notifying observers about frequency change. biodb.DEBUG[2025-08-09 16:03:30.988][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated. biodb.DEBUG[2025-08-09 16:03:30.989][self$setPropertyValue] Setting property "token" to "NA". biodb.DEBUG[2025-08-09 16:03:30.990][self$setPropertyValue] Setting property "urls" to "<NULL>". biodb.DEBUG[2025-08-09 16:03:30.992][self$setPropertyValue] Notifying observers about URLs change. biodb.DEBUG[2025-08-09 16:03:30.993][notifyObservers] Notify observers for notifyConnUrlsUpdated. biodb.DEBUG[2025-08-09 16:03:30.994][self$setPropertyValue] Setting property "writable" to "TRUE". biodb.DEBUG[2025-08-09 16:03:30.995][self$setPropertyValue] Setting property "xml.ns" to "<NULL>". biodb.DEBUG[2025-08-09 16:03:30.997][self$getDbsInfo()$define] Define connector comp.sqlite. biodb.DEBUG[2025-08-09 16:03:30.998][self$setPropertyValue] Setting property "compound.db" to "TRUE". biodb.DEBUG[2025-08-09 16:03:31.000][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.". biodb.DEBUG[2025-08-09 16:03:31.001][self$setPropertyValue] Setting property "disabled" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.002][self$setPropertyValue] Setting property "disabling.reason" to "". biodb.DEBUG[2025-08-09 16:03:31.003][self$setPropertyValue] Setting property "downloadable" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.004][self$setPropertyValue] Setting property "dwnld.ext" to "NA". biodb.DEBUG[2025-08-09 16:03:31.006][self$setPropertyValue] Setting property "editable" to "TRUE". biodb.DEBUG[2025-08-09 16:03:31.007][self$setPropertyValue] Setting property "entry.content.encoding" to "NA". biodb.DEBUG[2025-08-09 16:03:31.008][self$setPropertyValue] Setting property "entry.content.type" to "list". biodb.DEBUG[2025-08-09 16:03:31.009][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")". biodb.DEBUG[2025-08-09 16:03:31.010][self$setPropertyValue] Setting property "mass.db" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.012][self$setPropertyValue] Setting property "name" to "Compound SQLite". biodb.DEBUG[2025-08-09 16:03:31.013][self$setPropertyValue] Setting property "package" to "biodb". biodb.DEBUG[2025-08-09 16:03:31.014][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>". biodb.DEBUG[2025-08-09 16:03:31.015][self$setPropertyValue] Setting property "remote" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.016][self$setPropertyValue] Setting property "searchable.fields" to "name". biodb.DEBUG[2025-08-09 16:03:31.016][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass". biodb.DEBUG[2025-08-09 16:03:31.016][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass". biodb.DEBUG[2025-08-09 16:03:31.016][self$setPropertyValue] Setting property "searchable.fields" to "average.mass". biodb.DEBUG[2025-08-09 16:03:31.016][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass". biodb.DEBUG[2025-08-09 16:03:31.018][self$setPropertyValue] Setting property "scheduler.n" to "1". biodb.DEBUG[2025-08-09 16:03:31.019][self$setPropertyValue] Notifying observers about frequency change. biodb.DEBUG[2025-08-09 16:03:31.020][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated. biodb.DEBUG[2025-08-09 16:03:31.021][self$setPropertyValue] Setting property "scheduler.t" to "1". biodb.DEBUG[2025-08-09 16:03:31.022][self$setPropertyValue] Notifying observers about frequency change. biodb.DEBUG[2025-08-09 16:03:31.023][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated. biodb.DEBUG[2025-08-09 16:03:31.024][self$setPropertyValue] Setting property "token" to "NA". biodb.DEBUG[2025-08-09 16:03:31.026][self$setPropertyValue] Setting property "urls" to "<NULL>". biodb.DEBUG[2025-08-09 16:03:31.027][self$setPropertyValue] Notifying observers about URLs change. biodb.DEBUG[2025-08-09 16:03:31.028][notifyObservers] Notify observers for notifyConnUrlsUpdated. biodb.DEBUG[2025-08-09 16:03:31.029][self$setPropertyValue] Setting property "writable" to "TRUE". biodb.DEBUG[2025-08-09 16:03:31.030][self$setPropertyValue] Setting property "xml.ns" to "<NULL>". biodb.DEBUG[2025-08-09 16:03:31.032][self$getDbsInfo()$define] Define connector mass.csv.file. biodb.DEBUG[2025-08-09 16:03:31.039][self$setPropertyValue] Setting property "compound.db" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.040][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..". biodb.DEBUG[2025-08-09 16:03:31.041][self$setPropertyValue] Setting property "disabled" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.043][self$setPropertyValue] Setting property "disabling.reason" to "". biodb.DEBUG[2025-08-09 16:03:31.044][self$setPropertyValue] Setting property "downloadable" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.045][self$setPropertyValue] Setting property "dwnld.ext" to "NA". biodb.DEBUG[2025-08-09 16:03:31.046][self$setPropertyValue] Setting property "editable" to "TRUE". biodb.DEBUG[2025-08-09 16:03:31.047][self$setPropertyValue] Setting property "entry.content.encoding" to "NA". biodb.DEBUG[2025-08-09 16:03:31.049][self$setPropertyValue] Setting property "entry.content.type" to "tsv". biodb.DEBUG[2025-08-09 16:03:31.050][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")". biodb.DEBUG[2025-08-09 16:03:31.051][self$setPropertyValue] Setting property "mass.db" to "TRUE". biodb.DEBUG[2025-08-09 16:03:31.052][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File". biodb.DEBUG[2025-08-09 16:03:31.054][self$setPropertyValue] Setting property "package" to "biodb". biodb.DEBUG[2025-08-09 16:03:31.055][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>". biodb.DEBUG[2025-08-09 16:03:31.056][self$setPropertyValue] Setting property "remote" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.057][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>". biodb.DEBUG[2025-08-09 16:03:31.058][self$setPropertyValue] Setting property "scheduler.n" to "1". biodb.DEBUG[2025-08-09 16:03:31.059][self$setPropertyValue] Notifying observers about frequency change. biodb.DEBUG[2025-08-09 16:03:31.061][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated. biodb.DEBUG[2025-08-09 16:03:31.062][self$setPropertyValue] Setting property "scheduler.t" to "1". biodb.DEBUG[2025-08-09 16:03:31.063][self$setPropertyValue] Notifying observers about frequency change. biodb.DEBUG[2025-08-09 16:03:31.064][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated. biodb.DEBUG[2025-08-09 16:03:31.065][self$setPropertyValue] Setting property "token" to "NA". biodb.DEBUG[2025-08-09 16:03:31.066][self$setPropertyValue] Setting property "urls" to "<NULL>". biodb.DEBUG[2025-08-09 16:03:31.067][self$setPropertyValue] Notifying observers about URLs change. biodb.DEBUG[2025-08-09 16:03:31.069][notifyObservers] Notify observers for notifyConnUrlsUpdated. biodb.DEBUG[2025-08-09 16:03:31.070][self$setPropertyValue] Setting property "writable" to "TRUE". biodb.DEBUG[2025-08-09 16:03:31.071][self$setPropertyValue] Setting property "xml.ns" to "<NULL>". biodb.DEBUG[2025-08-09 16:03:31.072][self$getDbsInfo()$define] Define connector mass.sqlite. biodb.DEBUG[2025-08-09 16:03:31.074][self$setPropertyValue] Setting property "compound.db" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.075][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.". biodb.DEBUG[2025-08-09 16:03:31.076][self$setPropertyValue] Setting property "disabled" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.078][self$setPropertyValue] Setting property "disabling.reason" to "". biodb.DEBUG[2025-08-09 16:03:31.079][self$setPropertyValue] Setting property "downloadable" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.080][self$setPropertyValue] Setting property "dwnld.ext" to "NA". biodb.DEBUG[2025-08-09 16:03:31.081][self$setPropertyValue] Setting property "editable" to "TRUE". biodb.DEBUG[2025-08-09 16:03:31.082][self$setPropertyValue] Setting property "entry.content.encoding" to "NA". biodb.DEBUG[2025-08-09 16:03:31.084][self$setPropertyValue] Setting property "entry.content.type" to "list". biodb.DEBUG[2025-08-09 16:03:31.085][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")". biodb.DEBUG[2025-08-09 16:03:31.086][self$setPropertyValue] Setting property "mass.db" to "TRUE". biodb.DEBUG[2025-08-09 16:03:31.087][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite". biodb.DEBUG[2025-08-09 16:03:31.088][self$setPropertyValue] Setting property "package" to "biodb". biodb.DEBUG[2025-08-09 16:03:31.090][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>". biodb.DEBUG[2025-08-09 16:03:31.091][self$setPropertyValue] Setting property "remote" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.092][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>". biodb.DEBUG[2025-08-09 16:03:31.093][self$setPropertyValue] Setting property "scheduler.n" to "1". biodb.DEBUG[2025-08-09 16:03:31.094][self$setPropertyValue] Notifying observers about frequency change. biodb.DEBUG[2025-08-09 16:03:31.095][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated. biodb.DEBUG[2025-08-09 16:03:31.097][self$setPropertyValue] Setting property "scheduler.t" to "1". biodb.DEBUG[2025-08-09 16:03:31.098][self$setPropertyValue] Notifying observers about frequency change. biodb.DEBUG[2025-08-09 16:03:31.099][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated. biodb.DEBUG[2025-08-09 16:03:31.100][self$setPropertyValue] Setting property "token" to "NA". biodb.DEBUG[2025-08-09 16:03:31.101][self$setPropertyValue] Setting property "urls" to "<NULL>". biodb.DEBUG[2025-08-09 16:03:31.102][self$setPropertyValue] Notifying observers about URLs change. biodb.DEBUG[2025-08-09 16:03:31.103][notifyObservers] Notify observers for notifyConnUrlsUpdated. biodb.DEBUG[2025-08-09 16:03:31.104][self$setPropertyValue] Setting property "writable" to "TRUE". biodb.DEBUG[2025-08-09 16:03:31.106][self$setPropertyValue] Setting property "xml.ns" to "<NULL>". biodb.DEBUG[2025-08-09 16:03:31.109][notifyObservers] Notify observers for notifyNewObservers. biodb.DEBUG[2025-08-09 16:03:31.110][FUN] Trying to call function notifyNewObservers on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.113][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.118][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.124][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.129][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.135][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.140][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.146][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.151][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.156][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.162][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.167][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.173][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.178][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.184][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.189][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.195][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.200][self$getEntryFields()$define] Define field accession. biodb.DEBUG[2025-08-09 16:03:31.205][self$getEntryFields()$define] Define field description. biodb.DEBUG[2025-08-09 16:03:31.206][self$getEntryFields()$define] Define field name. biodb.DEBUG[2025-08-09 16:03:31.208][self$getEntryFields()$define] Define field cas.id. biodb.DEBUG[2025-08-09 16:03:31.209][self$getEntryFields()$define] Define field chebi.id. biodb.DEBUG[2025-08-09 16:03:31.211][self$getEntryFields()$define] Define field chemspider.id. biodb.DEBUG[2025-08-09 16:03:31.213][self$getEntryFields()$define] Define field comp.csv.file.id. biodb.DEBUG[2025-08-09 16:03:31.214][self$getEntryFields()$define] Define field comp.sqlite.id. biodb.DEBUG[2025-08-09 16:03:31.216][self$getEntryFields()$define] Define field expasy.enzyme.id. biodb.DEBUG[2025-08-09 16:03:31.217][self$getEntryFields()$define] Define field hmdb.metabolites.id. biodb.DEBUG[2025-08-09 16:03:31.219][self$getEntryFields()$define] Define field kegg.compound.id. biodb.DEBUG[2025-08-09 16:03:31.220][self$getEntryFields()$define] Define field kegg.genes.id. biodb.DEBUG[2025-08-09 16:03:31.222][self$getEntryFields()$define] Define field mass.csv.file.id. biodb.DEBUG[2025-08-09 16:03:31.223][self$getEntryFields()$define] Define field mass.sqlite.id. biodb.DEBUG[2025-08-09 16:03:31.225][self$getEntryFields()$define] Define field ncbi.gene.id. biodb.DEBUG[2025-08-09 16:03:31.226][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id. biodb.DEBUG[2025-08-09 16:03:31.228][self$getEntryFields()$define] Define field compound.id. biodb.DEBUG[2025-08-09 16:03:31.230][self$getEntryFields()$define] Define field average.mass. biodb.DEBUG[2025-08-09 16:03:31.231][self$getEntryFields()$define] Define field molecular.mass. biodb.DEBUG[2025-08-09 16:03:31.233][self$getEntryFields()$define] Define field monoisotopic.mass. biodb.DEBUG[2025-08-09 16:03:31.234][self$getEntryFields()$define] Define field nominal.mass. biodb.DEBUG[2025-08-09 16:03:31.236][self$getEntryFields()$define] Define field peak.attr. biodb.DEBUG[2025-08-09 16:03:31.237][self$getEntryFields()$define] Define field peak.comp. biodb.DEBUG[2025-08-09 16:03:31.239][self$getEntryFields()$define] Define field peak.error.ppm. biodb.DEBUG[2025-08-09 16:03:31.241][self$getEntryFields()$define] Define field peak.formula. biodb.DEBUG[2025-08-09 16:03:31.242][self$getEntryFields()$define] Define field peak.intensity. biodb.DEBUG[2025-08-09 16:03:31.244][self$getEntryFields()$define] Define field peak.mass. biodb.DEBUG[2025-08-09 16:03:31.245][self$getEntryFields()$define] Define field peak.mztheo. biodb.DEBUG[2025-08-09 16:03:31.247][self$getEntryFields()$define] Define field peak.mzexp. biodb.DEBUG[2025-08-09 16:03:31.248][self$getEntryFields()$define] Define field peak.mz. biodb.DEBUG[2025-08-09 16:03:31.250][self$getEntryFields()$define] Define field peak.relative.intensity. biodb.DEBUG[2025-08-09 16:03:31.251][self$getEntryFields()$define] Define field peaks. biodb.DEBUG[2025-08-09 16:03:31.253][self$getEntryFields()$define] Define field chrom.col.constructor. biodb.DEBUG[2025-08-09 16:03:31.255][self$getEntryFields()$define] Define field chrom.col.diameter. biodb.DEBUG[2025-08-09 16:03:31.256][self$getEntryFields()$define] Define field chrom.col.id. biodb.DEBUG[2025-08-09 16:03:31.258][self$getEntryFields()$define] Define field chrom.col.length. biodb.DEBUG[2025-08-09 16:03:31.259][self$getEntryFields()$define] Define field chrom.col.method.protocol. biodb.DEBUG[2025-08-09 16:03:31.261][self$getEntryFields()$define] Define field chrom.col.name. biodb.DEBUG[2025-08-09 16:03:31.262][self$getEntryFields()$define] Define field chrom.flow.gradient. biodb.DEBUG[2025-08-09 16:03:31.264][self$getEntryFields()$define] Define field chrom.flow.rate. biodb.DEBUG[2025-08-09 16:03:31.265][self$getEntryFields()$define] Define field chrom.rt. biodb.DEBUG[2025-08-09 16:03:31.267][self$getEntryFields()$define] Define field chrom.rt.max. biodb.DEBUG[2025-08-09 16:03:31.269][self$getEntryFields()$define] Define field chrom.rt.min. biodb.DEBUG[2025-08-09 16:03:31.270][self$getEntryFields()$define] Define field chrom.rt.unit. biodb.DEBUG[2025-08-09 16:03:31.272][self$getEntryFields()$define] Define field chrom.solvent. biodb.DEBUG[2025-08-09 16:03:31.273][self$getEntryFields()$define] Define field aa.seq. biodb.DEBUG[2025-08-09 16:03:31.275][self$getEntryFields()$define] Define field aa.seq.length. biodb.DEBUG[2025-08-09 16:03:31.276][self$getEntryFields()$define] Define field aa.seq.location. biodb.DEBUG[2025-08-09 16:03:31.278][self$getEntryFields()$define] Define field nt.seq. biodb.DEBUG[2025-08-09 16:03:31.280][self$getEntryFields()$define] Define field nt.seq.length. biodb.DEBUG[2025-08-09 16:03:31.281][self$getEntryFields()$define] Define field ec. biodb.DEBUG[2025-08-09 16:03:31.283][self$getEntryFields()$define] Define field organism. biodb.DEBUG[2025-08-09 16:03:31.284][self$getEntryFields()$define] Define field pathway.class. biodb.DEBUG[2025-08-09 16:03:31.286][self$getEntryFields()$define] Define field catalytic.activity. biodb.DEBUG[2025-08-09 16:03:31.287][self$getEntryFields()$define] Define field cofactor. biodb.DEBUG[2025-08-09 16:03:31.289][self$getEntryFields()$define] Define field gene.symbol. biodb.DEBUG[2025-08-09 16:03:31.291][self$getEntryFields()$define] Define field charge. biodb.DEBUG[2025-08-09 16:03:31.298][self$getEntryFields()$define] Define field comp.iupac.name.allowed. biodb.DEBUG[2025-08-09 16:03:31.299][self$getEntryFields()$define] Define field comp.iupac.name.cas. biodb.DEBUG[2025-08-09 16:03:31.301][self$getEntryFields()$define] Define field comp.iupac.name.pref. biodb.DEBUG[2025-08-09 16:03:31.303][self$getEntryFields()$define] Define field comp.iupac.name.syst. biodb.DEBUG[2025-08-09 16:03:31.304][self$getEntryFields()$define] Define field comp.iupac.name.trad. biodb.DEBUG[2025-08-09 16:03:31.306][self$getEntryFields()$define] Define field comp.super.class. biodb.DEBUG[2025-08-09 16:03:31.307][self$getEntryFields()$define] Define field equation. biodb.DEBUG[2025-08-09 16:03:31.309][self$getEntryFields()$define] Define field formula. biodb.DEBUG[2025-08-09 16:03:31.310][self$getEntryFields()$define] Define field composition. biodb.DEBUG[2025-08-09 16:03:31.312][self$getEntryFields()$define] Define field inchi. biodb.DEBUG[2025-08-09 16:03:31.313][self$getEntryFields()$define] Define field inchikey. biodb.DEBUG[2025-08-09 16:03:31.315][self$getEntryFields()$define] Define field logp. biodb.DEBUG[2025-08-09 16:03:31.316][self$getEntryFields()$define] Define field ms.level. biodb.DEBUG[2025-08-09 16:03:31.318][self$getEntryFields()$define] Define field ms.mode. biodb.DEBUG[2025-08-09 16:03:31.319][self$getEntryFields()$define] Define field msdev. biodb.DEBUG[2025-08-09 16:03:31.321][self$getEntryFields()$define] Define field msdevtype. biodb.DEBUG[2025-08-09 16:03:31.322][self$getEntryFields()$define] Define field msprecannot. biodb.DEBUG[2025-08-09 16:03:31.324][self$getEntryFields()$define] Define field msprecmz. biodb.DEBUG[2025-08-09 16:03:31.325][self$getEntryFields()$define] Define field mstype. biodb.DEBUG[2025-08-09 16:03:31.327][self$getEntryFields()$define] Define field nb.compounds. biodb.DEBUG[2025-08-09 16:03:31.328][self$getEntryFields()$define] Define field nb.peaks. biodb.DEBUG[2025-08-09 16:03:31.330][self$getEntryFields()$define] Define field products. biodb.DEBUG[2025-08-09 16:03:31.331][self$getEntryFields()$define] Define field smiles. biodb.DEBUG[2025-08-09 16:03:31.333][self$getEntryFields()$define] Define field smiles.canonical. biodb.DEBUG[2025-08-09 16:03:31.335][self$getEntryFields()$define] Define field smiles.isomeric. biodb.DEBUG[2025-08-09 16:03:31.336][self$getEntryFields()$define] Define field substrates. biodb.DEBUG[2025-08-09 16:03:31.371][initialize] Created successfully new BiodbMain instance. biodb.DEBUG[2025-08-09 16:03:31.374][initialize] This is biodb version 1.17.1. biodb.DEBUG[2025-08-09 16:03:31.377][notifyObservers] Notify observers for notifyNewObservers. biodb.DEBUG[2025-08-09 16:03:31.378][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.380][FUN] Trying to call function notifyNewObservers on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.386][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.393][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.401][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.409][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.416][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.424][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.431][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.439][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.446][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.454][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.461][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.469][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.476][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.484][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.491][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.499][notifyObservers] Notify observers for notifyCfgUpdate. biodb.DEBUG[2025-08-09 16:03:31.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:31.508][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml". biodb.DEBUG[2025-08-09 16:03:31.517][self$getDbsInfo()$define] Define connector chebi. biodb.DEBUG[2025-08-09 16:03:31.520][self$setPropertyValue] Setting property "compound.db" to "TRUE". biodb.DEBUG[2025-08-09 16:03:31.521][self$setPropertyValue] Setting property "description" to "NA". biodb.DEBUG[2025-08-09 16:03:31.522][self$setPropertyValue] Setting property "disabled" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.523][self$setPropertyValue] Setting property "disabling.reason" to "". biodb.DEBUG[2025-08-09 16:03:31.524][self$setPropertyValue] Setting property "downloadable" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.525][self$setPropertyValue] Setting property "dwnld.ext" to "NA". biodb.DEBUG[2025-08-09 16:03:31.527][self$setPropertyValue] Setting property "editable" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.528][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8". biodb.DEBUG[2025-08-09 16:03:31.529][self$setPropertyValue] Setting property "entry.content.type" to "xml". biodb.DEBUG[2025-08-09 16:03:31.530][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")". biodb.DEBUG[2025-08-09 16:03:31.531][self$setPropertyValue] Setting property "mass.db" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.533][self$setPropertyValue] Setting property "name" to "ChEBI". biodb.DEBUG[2025-08-09 16:03:31.534][self$setPropertyValue] Setting property "package" to "biodb". biodb.DEBUG[2025-08-09 16:03:31.535][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')". biodb.DEBUG[2025-08-09 16:03:31.535][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge". biodb.DEBUG[2025-08-09 16:03:31.535][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")". biodb.DEBUG[2025-08-09 16:03:31.535][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi". biodb.DEBUG[2025-08-09 16:03:31.535][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey". biodb.DEBUG[2025-08-09 16:03:31.535][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data". biodb.DEBUG[2025-08-09 16:03:31.535][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass". biodb.DEBUG[2025-08-09 16:03:31.535][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass". biodb.DEBUG[2025-08-09 16:03:31.535][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")". biodb.DEBUG[2025-08-09 16:03:31.535][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar". biodb.DEBUG[2025-08-09 16:03:31.535][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles". biodb.DEBUG[2025-08-09 16:03:31.536][self$setPropertyValue] Setting property "remote" to "TRUE". biodb.DEBUG[2025-08-09 16:03:31.538][self$setPropertyValue] Setting property "searchable.fields" to "name". biodb.DEBUG[2025-08-09 16:03:31.538][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass". biodb.DEBUG[2025-08-09 16:03:31.538][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass". biodb.DEBUG[2025-08-09 16:03:31.539][self$setPropertyValue] Setting property "scheduler.n" to "3". biodb.DEBUG[2025-08-09 16:03:31.540][self$setPropertyValue] Notifying observers about frequency change. biodb.DEBUG[2025-08-09 16:03:31.541][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated. biodb.DEBUG[2025-08-09 16:03:31.542][self$setPropertyValue] Setting property "scheduler.t" to "1". biodb.DEBUG[2025-08-09 16:03:31.543][self$setPropertyValue] Notifying observers about frequency change. biodb.DEBUG[2025-08-09 16:03:31.544][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated. biodb.DEBUG[2025-08-09 16:03:31.546][self$setPropertyValue] Setting property "token" to "NA". biodb.DEBUG[2025-08-09 16:03:31.547][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/". biodb.DEBUG[2025-08-09 16:03:31.547][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/". biodb.DEBUG[2025-08-09 16:03:31.548][self$setPropertyValue] Notifying observers about URLs change. biodb.DEBUG[2025-08-09 16:03:31.549][notifyObservers] Notify observers for notifyConnUrlsUpdated. biodb.DEBUG[2025-08-09 16:03:31.550][self$setPropertyValue] Setting property "writable" to "FALSE". biodb.DEBUG[2025-08-09 16:03:31.551][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi". biodb.DEBUG[2025-08-09 16:03:31.551][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema". biodb.DEBUG[2025-08-09 16:03:31.557][self$getEntryFields()$define] Define field chebi.id. biodb.DEBUG[2025-08-09 16:03:31.559][self$getEntryFields()$define] Define field kegg.compound.id. biodb.DEBUG[2025-08-09 16:03:31.560][self$getEntryFields()$define] Define field n_stars. biodb.DEBUG[2025-08-09 16:03:31.562][self$getEntryFields()$define] Define field molecular.mass. biodb.DEBUG[2025-08-09 16:03:31.564][self$getEntryFields()$define] Define field inchi. biodb.DEBUG[2025-08-09 16:03:31.565][self$getEntryFields()$define] Define field inchikey. biodb.DEBUG[2025-08-09 16:03:31.591][super$initialize] Initialize connector chebi. biodb.DEBUG[2025-08-09 16:03:31.658][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi . biodb.INFO [2025-08-09 16:03:31.668][biodb::testThat] biodb.INFO [2025-08-09 16:03:31.670][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value "). biodb.INFO [2025-08-09 16:03:31.671][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:03:31.672][biodb::testThat] biodb.TRACE[2025-08-09 16:03:31.677][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml". biodb.DEBUG[2025-08-09 16:03:31.679][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:31.682][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:31.704][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:31.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:31.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:31.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:31.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:31.762][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:31.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:31.771][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:31.774][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:31.775][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.777][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:31.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:31.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.793][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.794][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:31.795][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:31.796][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.798][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.820][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:31.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:31.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.824][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.826][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:31.827][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:31.828][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.829][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:31.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:31.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.835][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.836][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:31.837][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:31.838][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.840][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:31.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.845][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.846][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:31.847][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:31.848][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.850][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:31.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:31.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.855][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.856][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:31.857][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:31.858][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.860][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.861][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:31.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:31.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.865][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.866][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:31.868][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:31.869][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.870][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.871][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:31.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:31.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.875][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.877][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:31.878][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:31.879][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.880][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:31.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:31.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.885][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.887][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:31.888][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:31.889][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.890][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:31.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:31.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.896][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.897][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:31.898][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:31.899][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.901][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:31.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.906][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.907][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:31.908][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:31.910][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.911][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:31.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:31.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.916][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:31.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:31.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.921][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:31.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:31.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.926][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:31.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:31.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:31.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:31.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.947][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:31.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:31.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.952][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:31.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:31.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.957][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:31.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.961][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:31.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:31.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.994][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:31.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:31.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:31.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:31.999][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.003][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:32.005][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440. biodb.TRACE[2025-08-09 16:03:32.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:32.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:32.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.012][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:32.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:32.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.016][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:32.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:32.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.040][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:32.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:32.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.045][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.050][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.055][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.056][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz. biodb.TRACE[2025-08-09 16:03:32.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz. biodb.TRACE[2025-08-09 16:03:32.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.060][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz. biodb.TRACE[2025-08-09 16:03:32.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz. biodb.TRACE[2025-08-09 16:03:32.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.065][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.066][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp. biodb.TRACE[2025-08-09 16:03:32.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp. biodb.TRACE[2025-08-09 16:03:32.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.070][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.071][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo. biodb.TRACE[2025-08-09 16:03:32.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo. biodb.TRACE[2025-08-09 16:03:32.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.074][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.082][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.100][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.110][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.115][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.125][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.132][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.137][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.142][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.147][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.152][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.156][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.171][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.176][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.180][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.182][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.183][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.184][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.185][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.190][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.205][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.210][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.215][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.216][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.217][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.218][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.220][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.224][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:32.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:32.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.239][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:32.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:32.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.244][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:32.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:32.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.249][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.250][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:32.251][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:32.252][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.254][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:32.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:32.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.258][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.269][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:32.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:32.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.273][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:32.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:32.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.278][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.279][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:32.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:32.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.283][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.284][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:32.285][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:32.286][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.288][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:32.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:32.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.293][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.308][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.313][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.318][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.319][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.320][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.321][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.323][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.328][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.343][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.348][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.358][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.359][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.360][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.362][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.363][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.368][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.379][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:32.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:32.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.383][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.384][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:32.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:32.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.387][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.389][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:32.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:32.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.392][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.394][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:32.395][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:32.396][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.397][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.399][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:32.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:32.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.402][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:32.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:32.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.417][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:32.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:32.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.422][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.423][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:32.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:32.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.427][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.428][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:32.430][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:32.431][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.432][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.433][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:32.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:32.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.437][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.448][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.451][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.453][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.456][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.458][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.461][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.462][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.464][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.465][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.466][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.467][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.471][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:32.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.485][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:32.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:32.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.490][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:32.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:32.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.495][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.496][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:32.498][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:32.499][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.500][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:32.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:32.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.505][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:32.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:32.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.519][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:32.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.524][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:32.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:32.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.528][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.530][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:32.531][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:32.532][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.533][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:32.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:32.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.538][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:32.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:32.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.553][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:32.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:32.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.557][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:32.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.562][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.563][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:32.565][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:32.566][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.567][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:32.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:32.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.572][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.583][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.615][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.616][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.617][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.624][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:32.625][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:32.627][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.628][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.634][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:32.636][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:32.637][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.638][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.645][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:32.646][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:32.647][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.648][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.655][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:32.656][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:32.658][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.659][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.666][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.667][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.668][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.669][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.676][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.677][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.678][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.679][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.686][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.687][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.689][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.690][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.697][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:32.699][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:32.701][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.703][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.710][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:32.711][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:32.712][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.714][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.720][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:32.721][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:32.722][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.724][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.742][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml". biodb.DEBUG[2025-08-09 16:03:32.771][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:32.772][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:32.774][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:32.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:32.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:32.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:32.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:32.785][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:32.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:32.789][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.790][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.791][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.793][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.817][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:32.819][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:32.820][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.821][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.823][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:32.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:32.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.826][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.827][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:32.829][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:32.830][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.831][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.833][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:32.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:32.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.838][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:32.839][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:32.840][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.841][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:32.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:32.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.846][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.847][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:32.849][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:32.850][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.851][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:32.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:32.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.856][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.857][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.859][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.860][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.861][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.862][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:32.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.866][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.867][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:32.868][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.870][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.871][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.872][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:32.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:32.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.876][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.877][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.878][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.879][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.880][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:32.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.885][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.887][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:32.888][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:32.889][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.890][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:32.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:32.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.895][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.897][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:32.898][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:32.899][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.900][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:32.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:32.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.905][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.907][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:32.908][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:32.909][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.910][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:32.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:32.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.915][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.920][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.930][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:32.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.934][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.939][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.944][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.949][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.954][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.958][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:32.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:32.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.963][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:32.964][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528. biodb.TRACE[2025-08-09 16:03:32.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:32.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:32.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.986][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:32.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:32.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.991][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:32.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:32.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:32.995][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:32.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:32.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:32.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.000][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.005][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.010][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.011][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz. biodb.TRACE[2025-08-09 16:03:33.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz. biodb.TRACE[2025-08-09 16:03:33.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.014][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.016][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz. biodb.TRACE[2025-08-09 16:03:33.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz. biodb.TRACE[2025-08-09 16:03:33.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.024][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.025][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp. biodb.TRACE[2025-08-09 16:03:33.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp. biodb.TRACE[2025-08-09 16:03:33.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.028][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.030][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo. biodb.TRACE[2025-08-09 16:03:33.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo. biodb.TRACE[2025-08-09 16:03:33.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.033][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.039][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.050][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.060][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.065][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.070][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.076][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.081][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.086][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.091][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.096][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.100][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.122][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.132][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.133][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.135][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.136][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.138][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.143][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.157][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.162][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.167][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.168][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.170][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.171][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.172][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.177][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:33.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:33.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.191][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:33.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:33.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.196][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:33.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:33.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.200][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.202][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:33.203][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:33.204][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.205][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:33.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:33.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.210][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:33.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:33.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.225][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:33.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:33.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.229][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:33.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:33.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.234][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.236][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:33.237][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:33.238][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.239][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:33.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:33.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.249][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.260][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:33.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.263][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.268][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.273][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.274][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:33.276][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.277][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.278][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.279][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:33.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.283][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.297][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.302][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.307][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.308][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.310][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.311][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.312][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.317][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.331][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.336][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.341][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.342][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.344][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.345][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.346][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.351][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:33.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:33.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.365][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.367][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:33.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:33.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.370][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.371][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:33.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:33.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.375][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.376][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:33.378][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:33.379][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.380][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.381][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:33.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:33.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.385][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.396][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:33.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:33.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.399][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.401][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:33.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:33.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.404][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.406][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:33.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:33.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.409][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.411][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:33.412][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:33.413][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.414][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:33.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:33.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.419][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.430][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.434][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.435][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.439][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.440][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.444][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.445][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.446][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.447][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.449][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.450][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.453][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:33.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:33.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.469][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:33.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:33.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.479][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:33.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:33.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.484][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.485][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:33.486][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:33.487][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.489][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:33.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:33.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.493][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:33.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:33.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.508][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:33.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:33.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:33.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:33.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.518][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.519][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:33.521][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:33.522][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.523][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:33.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:33.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.528][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:33.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:33.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.542][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:33.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:33.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.547][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:33.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:33.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.552][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.553][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:33.555][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:33.556][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.557][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:33.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:33.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.562][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.573][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.574][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.576][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.577][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.584][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:33.585][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:33.586][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.588][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.594][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:33.596][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:33.597][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.598][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.605][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:33.606][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:33.608][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.609][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.616][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:33.617][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:33.618][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.619][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.626][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.628][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.629][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.630][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.637][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.638][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.640][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.641][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.648][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.649][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.650][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.651][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.658][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:33.659][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:33.661][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.662][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.668][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:33.670][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:33.671][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.672][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.679][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:33.680][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:33.681][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.683][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.691][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml". biodb.DEBUG[2025-08-09 16:03:33.692][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:33.694][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:33.696][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:33.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:33.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:33.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:33.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:33.710][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:33.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:33.714][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.716][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.717][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.718][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.723][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.730][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:33.731][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:33.732][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.733][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.735][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:33.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:33.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.738][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.740][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:33.741][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:33.742][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.743][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:33.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:33.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.748][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.750][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:33.751][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:33.752][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.753][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:33.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:33.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.758][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.760][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:33.761][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:33.762][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.763][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:33.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:33.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.768][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.770][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.771][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.772][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.773][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.775][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:33.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.778][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.780][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:33.781][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.782][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.783][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.785][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:33.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.788][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.790][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.791][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.792][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.793][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:33.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.798][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.800][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:33.801][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:33.802][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.803][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:33.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:33.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.810][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:33.811][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:33.812][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.813][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.815][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:33.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:33.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.818][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.820][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:33.821][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:33.822][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.823][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:33.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:33.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.828][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.833][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.838][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.843][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.848][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.853][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.857][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.862][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.867][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.872][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.878][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:33.880][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799. biodb.TRACE[2025-08-09 16:03:33.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:33.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:33.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.886][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:33.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:33.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.891][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:33.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:33.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.896][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:33.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:33.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.901][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.906][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:33.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.910][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz. biodb.TRACE[2025-08-09 16:03:33.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz. biodb.TRACE[2025-08-09 16:03:33.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.915][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.916][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz. biodb.TRACE[2025-08-09 16:03:33.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz. biodb.TRACE[2025-08-09 16:03:33.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.920][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.921][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp. biodb.TRACE[2025-08-09 16:03:33.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp. biodb.TRACE[2025-08-09 16:03:33.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.925][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.926][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo. biodb.TRACE[2025-08-09 16:03:33.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo. biodb.TRACE[2025-08-09 16:03:33.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.930][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.936][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.946][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.966][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.971][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.978][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.983][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.992][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:33.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:33.997][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:33.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:34.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:34.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.002][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.015][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.020][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.025][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.026][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.028][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.029][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.030][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.035][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:34.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:34.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.049][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:34.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:34.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.054][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:34.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:34.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.059][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.060][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:34.062][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:34.063][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.064][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:34.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:34.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.069][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:34.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:34.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.083][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:34.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.088][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:34.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.093][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.094][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:34.096][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:34.097][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.098][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:34.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:34.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.103][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:34.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.118][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:34.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:34.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.122][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:34.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:34.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.128][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:34.130][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:34.131][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.132][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:34.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:34.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.137][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.148][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.152][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.153][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.157][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.161][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.163][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.164][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.165][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.166][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.168][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.171][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.191][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.196][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.202][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.203][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.204][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.205][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.210][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.225][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.230][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.235][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.236][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.237][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.238][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.240][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.244][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.255][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:34.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:34.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.259][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.260][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:34.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:34.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.264][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.265][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:34.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:34.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.269][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.270][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:34.271][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:34.272][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.274][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.275][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:34.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:34.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.278][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.289][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:34.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:34.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.293][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.294][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:34.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:34.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.298][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.299][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:34.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:34.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.303][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.304][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:34.305][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:34.307][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.308][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.309][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:34.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:34.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.312][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:34.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:34.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.327][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:34.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:34.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.332][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:34.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:34.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.337][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.338][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:34.339][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:34.340][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.341][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:34.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:34.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.346][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:34.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:34.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.360][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:34.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:34.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.365][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.366][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:34.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:34.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.370][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.371][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:34.373][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:34.374][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.375][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:34.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:34.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.380][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.390][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.392][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.393][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.394][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.400][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:34.402][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:34.403][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.404][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.410][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:34.416][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:34.418][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.419][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.425][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:34.426][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:34.428][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.429][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.435][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:34.436][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:34.438][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.439][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.445][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.446][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.447][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.449][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.455][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.456][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.457][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.459][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.465][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.467][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.468][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.469][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.475][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:03:34.477][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:34.478][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.479][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.485][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:34.487][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:34.488][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.489][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.496][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:34.497][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:34.498][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.499][ef$get] fields variable is a list. biodb.INFO [2025-08-09 16:03:34.511][biodb::testThat] biodb.INFO [2025-08-09 16:03:34.512][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. "). biodb.INFO [2025-08-09 16:03:34.513][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:03:34.514][biodb::testThat] biodb.DEBUG[2025-08-09 16:03:34.517][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799". biodb.DEBUG[2025-08-09 16:03:34.572][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)... fscache.INFO [2025-08-09 16:03:34.576][cch$loadContents] Load 3 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:34.609][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml. fscache.DEBUG[2025-08-09 16:03:34.623][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml. fscache.DEBUG[2025-08-09 16:03:34.639][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml. biodb.DEBUG[2025-08-09 16:03:34.640][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:34.642][self$createEntryFromContent] Creating ChEBI entries from 3 content(s). biodb.DEBUG[2025-08-09 16:03:34.643][self$createEntryFromContent] Parsing 3 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:34.645][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:34.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:34.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:34.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:34.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:34.657][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:34.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:34.660][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.662][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.663][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.664][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.669][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.670][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:34.672][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:34.673][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.674][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.675][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:34.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:34.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.679][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.680][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:34.682][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:34.683][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.684][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.686][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:34.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:34.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.689][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.690][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:34.692][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:34.693][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.694][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:34.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:34.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.700][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.701][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:34.702][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:34.703][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.705][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:34.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:34.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.710][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.711][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.712][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.714][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.715][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.716][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.720][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.721][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:34.723][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.724][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.725][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.726][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:34.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.730][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.731][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.733][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.734][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.735][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.740][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.742][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:34.743][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:34.744][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.745][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:34.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:34.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.750][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.752][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:34.753][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:34.754][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.755][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:34.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:34.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.761][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.767][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:34.769][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:34.770][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.771][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:34.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:34.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:34.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:34.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.782][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:34.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:34.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.787][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.792][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:34.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:34.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.797][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.802][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.807][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.811][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:34.813][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:34.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:34.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:34.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:34.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:34.824][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:34.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:34.828][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.829][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.830][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.831][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.836][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.838][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:34.839][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:34.840][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.841][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.843][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:34.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:34.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.846][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.848][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:34.849][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:34.850][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.851][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.853][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:34.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:34.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.857][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.858][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:34.859][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:34.861][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.862][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:34.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:34.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.867][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.868][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:34.869][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:34.871][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.872][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:34.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:34.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.877][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.878][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.879][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.880][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.882][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.883][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:34.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.887][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.888][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:34.889][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.890][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.892][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.893][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:34.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:34.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.897][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.898][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.899][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.901][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.902][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:34.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.907][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.908][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:34.909][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:34.911][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.912][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:34.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:34.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.917][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.918][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:34.920][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:34.921][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.922][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.923][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:34.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:34.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.927][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.928][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:34.929][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:34.931][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.932][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:34.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:34.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.937][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:34.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:34.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:34.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.947][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.951][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:34.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:34.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.956][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.961][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.966][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.971][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:34.972][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:34.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:34.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:34.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:34.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:34.984][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:34.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:34.987][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.994][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:34.995][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:34.996][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:34.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:34.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:35.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.001][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.003][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:35.004][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:35.005][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.007][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.008][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:35.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:35.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.012][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.013][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:35.015][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:35.016][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.017][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.018][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:35.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.022][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.023][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:35.025][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:35.026][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.027][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:35.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:35.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.032][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.033][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:35.035][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:35.036][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.037][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:35.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:35.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.042][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.043][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:35.044][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:35.046][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.047][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.048][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:35.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:35.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.053][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:35.054][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:35.055][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.057][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.058][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:35.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:35.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.062][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.063][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:35.064][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:35.065][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.067][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:35.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:35.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.072][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.073][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:35.074][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:35.075][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.077][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:35.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:35.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.082][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.083][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:35.084][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:35.086][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.087][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.088][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:35.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:35.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.092][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.093][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:35.095][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:35.096][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.097][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:35.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:35.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.102][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:35.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:35.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.107][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:35.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:35.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.112][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:35.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:35.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.117][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:35.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:35.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.121][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:35.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:35.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.126][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:35.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:35.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.131][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:35.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:35.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.136][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:35.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:35.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.141][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:35.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:35.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.146][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:35.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:35.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.151][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:35.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:35.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.156][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:35.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:35.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.160][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:35.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:35.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.165][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:35.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:35.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.170][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:35.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:35.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.175][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:35.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:35.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.180][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:35.181][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799. biodb.TRACE[2025-08-09 16:03:35.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt. biodb.TRACE[2025-08-09 16:03:35.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt. biodb.TRACE[2025-08-09 16:03:35.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.186][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min. biodb.TRACE[2025-08-09 16:03:35.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min. biodb.TRACE[2025-08-09 16:03:35.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.191][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max. biodb.TRACE[2025-08-09 16:03:35.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max. biodb.TRACE[2025-08-09 16:03:35.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.196][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt. biodb.TRACE[2025-08-09 16:03:35.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt. biodb.TRACE[2025-08-09 16:03:35.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.206][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min. biodb.TRACE[2025-08-09 16:03:35.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min. biodb.TRACE[2025-08-09 16:03:35.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.216][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max. biodb.TRACE[2025-08-09 16:03:35.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max. biodb.TRACE[2025-08-09 16:03:35.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.221][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt. biodb.TRACE[2025-08-09 16:03:35.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt. biodb.TRACE[2025-08-09 16:03:35.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min. biodb.TRACE[2025-08-09 16:03:35.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min. biodb.TRACE[2025-08-09 16:03:35.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.237][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max. biodb.TRACE[2025-08-09 16:03:35.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max. biodb.TRACE[2025-08-09 16:03:35.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.242][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.INFO [2025-08-09 16:03:35.254][biodb::testThat] biodb.INFO [2025-08-09 16:03:35.256][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field "). biodb.INFO [2025-08-09 16:03:35.257][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:03:35.258][biodb::testThat] biodb.TRACE[2025-08-09 16:03:35.262][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:35.263][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:35.264][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.265][ef$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:35.267][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name". biodb.TRACE[2025-08-09 16:03:35.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:35.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:35.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.300][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:35.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:35.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.305][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:35.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:35.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.310][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:35.314][function(conn, opt)] With value "squalene". sched.DEBUG[2025-08-09 16:03:35.319][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl". fscache.INFO [2025-08-09 16:03:35.336][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:35.360][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content. sched.DEBUG[2025-08-09 16:03:35.362][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. sched.DEBUG[2025-08-09 16:03:35.379][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:35.405][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:35.421][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content. sched.DEBUG[2025-08-09 16:03:35.423][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:35.431][function(conn, opt)] With found IDs [1]: "15440". biodb.TRACE[2025-08-09 16:03:35.448][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:35.449][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:35.450][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.452][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.453][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:35.454][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:35.455][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.456][ef$get] fields variable is a list. biodb.INFO [2025-08-09 16:03:35.463][biodb::testThat] biodb.INFO [2025-08-09 16:03:35.464][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. "). biodb.INFO [2025-08-09 16:03:35.465][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:03:35.466][biodb::testThat] biodb.TRACE[2025-08-09 16:03:35.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:35.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:35.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.496][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:35.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.501][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:35.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.506][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:35.554][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:35.557][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:35.561][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content. sched.DEBUG[2025-08-09 16:03:35.562][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.INFO [2025-08-09 16:03:35.585][biodb::testThat] biodb.INFO [2025-08-09 16:03:35.586][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. "). biodb.INFO [2025-08-09 16:03:35.587][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:03:35.588][biodb::testThat] biodb.TRACE[2025-08-09 16:03:35.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:35.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:35.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.605][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:35.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:35.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.610][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:35.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:35.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.615][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:35.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:35.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.625][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:35.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:35.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.630][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:35.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:35.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.635][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.636][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz. biodb.TRACE[2025-08-09 16:03:35.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz. biodb.TRACE[2025-08-09 16:03:35.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.639][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.641][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz. biodb.TRACE[2025-08-09 16:03:35.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz. biodb.TRACE[2025-08-09 16:03:35.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.644][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.646][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp. biodb.TRACE[2025-08-09 16:03:35.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp. biodb.TRACE[2025-08-09 16:03:35.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.649][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.651][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo. biodb.TRACE[2025-08-09 16:03:35.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo. biodb.TRACE[2025-08-09 16:03:35.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.654][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:35.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:35.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.668][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:35.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:35.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.672][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:35.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:35.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:35.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:35.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.682][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:35.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:35.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.687][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:35.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:35.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.691][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.693][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz. biodb.TRACE[2025-08-09 16:03:35.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz. biodb.TRACE[2025-08-09 16:03:35.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.696][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.697][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz. biodb.TRACE[2025-08-09 16:03:35.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz. biodb.TRACE[2025-08-09 16:03:35.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.702][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.703][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp. biodb.TRACE[2025-08-09 16:03:35.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp. biodb.TRACE[2025-08-09 16:03:35.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:35.708][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo. biodb.TRACE[2025-08-09 16:03:35.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo. biodb.TRACE[2025-08-09 16:03:35.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:35.712][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.INFO [2025-08-09 16:03:35.721][biodb::testThat] biodb.INFO [2025-08-09 16:03:35.722][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. "). biodb.INFO [2025-08-09 16:03:35.724][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:03:35.725][biodb::testThat] biodb.INFO [2025-08-09 16:03:35.736][biodb::testThat] biodb.INFO [2025-08-09 16:03:35.737][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. "). biodb.INFO [2025-08-09 16:03:35.739][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:03:35.740][biodb::testThat] biodb.INFO [2025-08-09 16:03:35.750][biodb::testThat] biodb.INFO [2025-08-09 16:03:35.751][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. "). biodb.INFO [2025-08-09 16:03:35.752][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:03:35.753][biodb::testThat] biodb.DEBUG[2025-08-09 16:03:35.758][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440". sched.TRACE[2025-08-09 16:03:36.491][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440). biodb.INFO [2025-08-09 16:03:37.109][biodb::testThat] biodb.INFO [2025-08-09 16:03:37.110][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. "). biodb.INFO [2025-08-09 16:03:37.112][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:03:37.113][biodb::testThat] biodb.TRACE[2025-08-09 16:03:37.121][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:37.122][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:37.124][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.125][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.126][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:37.127][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:37.128][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.130][ef$get] fields variable is a list. biodb.INFO [2025-08-09 16:03:37.132][biodb::testThat] biodb.INFO [2025-08-09 16:03:37.133][biodb::testThat] Running test function test.searchCompound (" We can search for a compound "). biodb.INFO [2025-08-09 16:03:37.134][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:03:37.135][biodb::testThat] biodb.TRACE[2025-08-09 16:03:37.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:37.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:37.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.154][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:37.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.159][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:37.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:37.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.164][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:37.289][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:37.292][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:37.296][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content. sched.DEBUG[2025-08-09 16:03:37.297][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. sched.DEBUG[2025-08-09 16:03:37.380][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:37.383][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:37.386][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content. sched.DEBUG[2025-08-09 16:03:37.388][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.TRACE[2025-08-09 16:03:37.406][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:03:37.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:03:37.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.410][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.421][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.426][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.431][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.436][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.441][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:37.448][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:37.451][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:37.465][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content. sched.DEBUG[2025-08-09 16:03:37.467][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:37.469][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:37.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:37.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:37.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:37.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:37.480][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:37.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:37.483][private$loadEntries] Creating entries from ids [1]: "192288". biodb.DEBUG[2025-08-09 16:03:37.521][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:37.523][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:37.541][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml. biodb.DEBUG[2025-08-09 16:03:37.542][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:37.544][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:37.551][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:37.553][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:37.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:37.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:37.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:37.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:37.564][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:37.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:37.568][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:37.569][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:37.570][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.572][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:37.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:37.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.577][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.578][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:37.579][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:37.580][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.582][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:37.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.587][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.588][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:37.589][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:37.590][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.592][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:37.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:37.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.597][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.598][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:37.600][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:37.601][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.602][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:37.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:37.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.608][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:37.609][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:37.611][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.612][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:37.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:37.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.617][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.618][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:37.619][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:37.621][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.622][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.623][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:37.624][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.626][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.627][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.628][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:37.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.632][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.633][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:37.634][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:37.636][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.637][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:37.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:37.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.642][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.643][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:37.644][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:37.646][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.647][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:37.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:37.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.652][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.653][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:37.655][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:37.656][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.657][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.658][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:37.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:37.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.662][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.663][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:37.665][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:37.666][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.667][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:37.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:37.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.672][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:37.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:37.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.677][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:37.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:37.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.682][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:37.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:37.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.686][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:37.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:37.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.691][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:37.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:37.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.696][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:37.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:37.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.701][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:37.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:37.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:37.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:37.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.712][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:37.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:37.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.717][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:37.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:37.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.721][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:37.723][self$createEntryFromContent] Accession numbers: 192288. biodb.TRACE[2025-08-09 16:03:37.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.735][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.745][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.750][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:37.752][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:37.755][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:37.771][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content. sched.DEBUG[2025-08-09 16:03:37.773][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:37.786][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:37.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:37.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:37.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:37.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:37.798][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:37.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:37.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.814][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:37.815][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:37.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:37.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:37.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:37.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:37.826][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:37.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:37.828][private$loadEntries] Creating entries from ids [1]: "209892". biodb.DEBUG[2025-08-09 16:03:37.829][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:37.831][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:37.850][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml. biodb.DEBUG[2025-08-09 16:03:37.851][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:37.853][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:37.854][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:37.856][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:37.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:37.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:37.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:37.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:37.867][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:37.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:37.871][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:37.872][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:37.873][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.874][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:37.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:37.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.880][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.881][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:37.882][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:37.883][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.884][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.886][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:37.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:37.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.890][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.891][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:37.892][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:37.893][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.894][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:37.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:37.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.900][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.901][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:37.902][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:37.903][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.904][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:37.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:37.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.910][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.911][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:37.912][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:37.913][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.914][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:37.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:37.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.919][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.921][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:37.922][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:37.923][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.924][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.926][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:37.927][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.928][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.929][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.931][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:37.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:37.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.934][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.936][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:37.937][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:37.938][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.939][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:37.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:37.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.946][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:37.947][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:37.948][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.949][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:37.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:37.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.954][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.956][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:37.957][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:37.958][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.959][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:37.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:37.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.970][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.971][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:37.972][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:37.974][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.975][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:37.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:37.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.980][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:37.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:37.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.985][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:37.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:37.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.990][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:37.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:37.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.994][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:37.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:37.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:37.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:37.999][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.009][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.014][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.019][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.023][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.028][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:38.029][self$createEntryFromContent] Accession numbers: 209892. biodb.TRACE[2025-08-09 16:03:38.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.034][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.039][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.044][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:38.070][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:38.073][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:38.076][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content. sched.DEBUG[2025-08-09 16:03:38.077][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:38.080][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:38.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:38.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:38.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:38.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:38.091][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:38.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:38.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.098][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.102][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.107][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:38.109][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:38.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:38.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:38.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:38.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:38.119][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:38.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:38.122][private$loadEntries] Creating entries from ids [1]: "26747". biodb.DEBUG[2025-08-09 16:03:38.123][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:38.125][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:38.140][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml. biodb.DEBUG[2025-08-09 16:03:38.141][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:38.143][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:38.144][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:38.146][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:38.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:38.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:38.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:38.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:38.157][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:38.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:38.161][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.162][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.163][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.164][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.169][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.171][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:38.172][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:38.173][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.174][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.176][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:38.177][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:38.178][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.184][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.186][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:38.187][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:38.188][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.190][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.191][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:38.192][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:38.193][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.195][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.196][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:38.197][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:38.198][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.199][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.201][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:38.202][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.203][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.204][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.206][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:38.207][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:38.208][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.209][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.211][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:38.212][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:38.213][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.214][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:38.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:38.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.219][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.221][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:38.222][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:38.223][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.224][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:38.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:38.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.229][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.231][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:38.232][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:38.233][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.234][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.239][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.244][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.249][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.254][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.259][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.263][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.268][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.273][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.278][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.283][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:38.284][self$createEntryFromContent] Accession numbers: 26747. biodb.TRACE[2025-08-09 16:03:38.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.289][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.294][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.299][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.304][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.308][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:38.310][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:38.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:38.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:38.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:38.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:38.321][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:38.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:38.323][private$loadEntries] Creating entries from ids [1]: "59285". biodb.DEBUG[2025-08-09 16:03:38.325][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:38.326][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:38.345][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml. biodb.DEBUG[2025-08-09 16:03:38.346][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:38.348][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:38.349][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:38.351][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:38.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:38.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:38.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:38.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:38.362][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:38.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:38.366][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.368][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.369][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.370][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.375][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.377][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:38.378][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:38.379][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.380][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.382][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:38.383][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:38.384][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.385][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.387][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:38.388][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:38.390][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.391][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.392][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:38.399][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:38.400][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.402][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.403][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:38.404][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:38.406][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.407][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.408][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:38.410][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.411][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.412][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.413][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:38.415][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:38.416][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.417][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.419][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:38.420][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:38.421][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.422][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:38.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.428][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.429][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:38.431][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:38.432][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.433][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.435][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:38.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:38.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.438][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.440][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:38.441][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:38.442][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.443][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.448][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.453][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.458][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.463][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.468][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.473][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.478][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.483][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.488][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.493][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:38.494][self$createEntryFromContent] Accession numbers: 59285. biodb.TRACE[2025-08-09 16:03:38.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.499][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.504][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.509][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.519][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:38.520][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:38.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:38.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:38.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:38.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:38.531][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:38.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:38.534][private$loadEntries] Creating entries from ids [1]: "75174". biodb.DEBUG[2025-08-09 16:03:38.535][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:38.537][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:38.554][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml. biodb.DEBUG[2025-08-09 16:03:38.556][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:38.558][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:38.559][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:38.561][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:38.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:38.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:38.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:38.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:38.572][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:38.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:38.576][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.577][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.578][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.580][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.585][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.586][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:38.587][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:38.589][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.590][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.591][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:38.592][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:38.594][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.595][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.596][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:38.598][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:38.599][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.600][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.602][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:38.603][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:38.604][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.605][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.607][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:38.608][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:38.609][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.610][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.630][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:38.632][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.633][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.634][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.636][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:38.637][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:38.638][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.639][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.641][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:38.642][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:38.643][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.644][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:38.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:38.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.650][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.651][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:38.653][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:38.654][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.655][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.656][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:38.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:38.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.660][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.662][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:38.663][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:38.664][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.665][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.670][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.675][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.680][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.685][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.690][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.695][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.700][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.705][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.712][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.717][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:38.718][self$createEntryFromContent] Accession numbers: 75174. biodb.TRACE[2025-08-09 16:03:38.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.723][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.728][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.733][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.738][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.743][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:38.744][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:38.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:38.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:38.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:38.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:38.756][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:38.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:38.758][private$loadEntries] Creating entries from ids [1]: "15441". biodb.DEBUG[2025-08-09 16:03:38.759][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:38.761][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:38.779][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml. biodb.DEBUG[2025-08-09 16:03:38.780][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:38.782][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:38.783][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:38.785][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:38.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:38.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:38.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:38.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:38.797][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:38.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:38.802][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.803][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.805][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.806][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.811][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.813][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:38.814][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:38.815][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.816][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.818][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:38.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:38.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.821][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.823][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:38.824][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:38.825][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.826][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:38.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:38.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.832][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.833][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:38.834][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:38.835][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.837][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:38.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:38.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.842][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.843][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:38.844][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:38.846][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.847][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:38.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:38.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.858][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.859][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:38.860][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:38.861][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.863][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.864][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:38.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:38.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.868][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.869][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:38.870][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.871][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.873][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.874][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:38.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.878][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.879][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:38.880][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:38.882][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.883][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:38.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:38.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.888][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.889][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:38.891][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:38.892][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.893][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:38.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:38.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.898][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.900][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:38.901][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:38.902][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.903][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.905][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:38.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:38.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.908][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.910][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:38.911][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:38.912][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.913][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:38.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:38.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.918][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.923][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.928][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.933][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:38.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.938][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.943][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.948][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.952][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.958][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:38.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:38.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.967][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:38.968][self$createEntryFromContent] Accession numbers: 15441. biodb.TRACE[2025-08-09 16:03:38.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.973][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.978][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:38.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:38.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:38.983][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:38.984][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:38.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:38.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:38.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:38.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:38.995][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:38.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:38.998][private$loadEntries] Creating entries from ids [1]: "15442". biodb.DEBUG[2025-08-09 16:03:38.999][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:39.001][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:39.019][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml. biodb.DEBUG[2025-08-09 16:03:39.020][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:39.022][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:39.024][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:39.025][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:39.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:39.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:39.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:39.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:39.037][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:39.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:39.040][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.042][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.043][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.044][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.049][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.050][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:39.052][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:39.053][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.054][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.055][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:39.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:39.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.059][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.060][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:39.062][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:39.063][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.064][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:39.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:39.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.075][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.076][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:39.078][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:39.079][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.080][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:39.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.085][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.086][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:39.088][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:39.089][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.090][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:39.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:39.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.095][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.096][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:39.097][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:39.099][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.100][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.101][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:39.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:39.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.105][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.106][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:39.107][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.109][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.110][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.111][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:39.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.115][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.116][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.117][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.118][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.120][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.125][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.126][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:39.127][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:39.128][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.129][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:39.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:39.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.135][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.136][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:39.137][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:39.138][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.139][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:39.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:39.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.144][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.146][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:39.147][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:39.148][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.149][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:39.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:39.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.154][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.159][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.169][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.174][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.179][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.183][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.188][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.193][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.198][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.203][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:39.204][self$createEntryFromContent] Accession numbers: 15442. biodb.TRACE[2025-08-09 16:03:39.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.214][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.218][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:39.219][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:39.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:39.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:39.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:39.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:39.231][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:39.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:39.233][private$loadEntries] Creating entries from ids [1]: "57310". biodb.DEBUG[2025-08-09 16:03:39.234][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:39.236][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:39.256][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml. biodb.DEBUG[2025-08-09 16:03:39.257][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:39.259][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:39.260][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:39.262][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:39.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:39.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:39.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:39.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:39.273][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:39.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:39.277][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.278][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.279][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.280][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.291][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.293][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:39.294][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:39.295][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.296][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.298][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:39.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:39.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.301][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.303][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:39.304][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:39.305][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.306][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:39.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:39.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.311][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.313][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:39.314][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:39.315][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.316][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:39.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:39.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.321][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.323][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:39.324][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:39.325][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.326][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:39.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:39.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.331][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.333][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:39.334][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:39.335][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.336][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.338][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:39.339][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.340][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.341][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:39.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.346][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.347][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.349][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.350][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.351][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.356][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.357][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:39.359][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:39.360][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.361][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:39.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:39.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.366][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.367][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:39.369][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:39.370][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.371][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.372][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:39.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:39.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.376][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.377][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:39.379][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:39.380][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.381][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:39.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:39.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.386][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.391][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.396][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.400][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.405][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.410][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.415][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.420][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.425][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.430][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.434][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:39.436][self$createEntryFromContent] Accession numbers: 57310. biodb.TRACE[2025-08-09 16:03:39.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.441][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.445][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.450][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:39.451][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:39.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:39.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:39.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:39.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:39.463][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:39.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:39.465][private$loadEntries] Creating entries from ids [1]: "66216". biodb.DEBUG[2025-08-09 16:03:39.466][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:39.468][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:39.486][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml. biodb.DEBUG[2025-08-09 16:03:39.487][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:39.489][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:39.490][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:39.492][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:39.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:39.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:39.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:39.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:39.509][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:39.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:39.514][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.515][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.516][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.517][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.522][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.524][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:39.525][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:39.526][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.527][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:39.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:39.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.533][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.534][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:39.535][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:39.536][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.537][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:39.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:39.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.543][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.544][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:39.545][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:39.546][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.547][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:39.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:39.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.553][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.554][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:39.555][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:39.556][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.557][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:39.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:39.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.562][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.564][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:39.565][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:39.566][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.567][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.569][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:39.570][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.571][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.572][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.574][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:39.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.577][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.579][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.580][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.581][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.582][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.587][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.588][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:39.590][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:39.591][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.592][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:39.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:39.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.597][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.599][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:39.600][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:39.601][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.602][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.604][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:39.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:39.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.607][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.609][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:39.610][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:39.611][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.612][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:39.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:39.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.617][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.627][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.632][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.637][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.642][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.646][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.651][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.656][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.661][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.666][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:39.667][self$createEntryFromContent] Accession numbers: 66216. biodb.TRACE[2025-08-09 16:03:39.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.672][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.677][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.682][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:39.683][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:39.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:39.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:39.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:39.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:39.694][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:39.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:39.696][private$loadEntries] Creating entries from ids [1]: "70860". biodb.DEBUG[2025-08-09 16:03:39.698][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:39.699][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:39.725][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml. biodb.DEBUG[2025-08-09 16:03:39.727][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:39.729][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:39.730][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:39.732][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:39.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:39.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:39.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:39.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:39.743][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:39.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:39.747][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.748][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.750][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.751][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.756][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.757][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:39.759][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:39.760][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.761][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.763][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:39.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:39.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.766][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.768][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:39.769][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:39.770][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.771][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.773][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:39.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:39.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.776][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.778][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:39.779][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:39.780][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.781][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:39.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:39.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.787][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.788][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:39.789][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:39.790][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.791][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:39.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:39.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.797][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.798][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:39.799][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:39.800][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.801][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.803][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:39.804][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.805][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.807][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.808][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:39.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.812][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.813][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.814][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.816][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.817][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:39.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.822][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.823][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:39.824][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:39.826][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.827][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:39.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:39.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.832][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.833][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:39.835][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:39.836][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.837][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.838][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:39.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:39.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.842][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.843][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:39.845][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:39.846][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.847][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:39.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:39.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.852][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.857][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.862][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.867][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:39.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.872][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.877][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.881][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.886][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.892][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.896][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.901][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:39.903][self$createEntryFromContent] Accession numbers: 70860. biodb.TRACE[2025-08-09 16:03:39.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.907][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.912][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:39.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.917][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:39.918][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:39.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:39.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:39.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:39.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:39.936][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:39.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:39.938][private$loadEntries] Creating entries from ids [1]: "70861". biodb.DEBUG[2025-08-09 16:03:39.940][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:39.941][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:39.957][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml. biodb.DEBUG[2025-08-09 16:03:39.959][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:39.960][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:39.962][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:39.964][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:39.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:39.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:39.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:39.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:39.975][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:39.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:39.979][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.980][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.982][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.983][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:39.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:39.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.988][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.989][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:39.991][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:39.992][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.993][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.995][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:39.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:39.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:39.998][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:39.999][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:40.001][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:40.002][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.003][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:40.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:40.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.008][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.010][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:40.011][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:40.012][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.013][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:40.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:40.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.018][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.020][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:40.021][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:40.022][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.023][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:40.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:40.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.028][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.030][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:40.031][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:40.032][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.033][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.035][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:40.036][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.037][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.038][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.040][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:40.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.044][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.045][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.046][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.047][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.049][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.054][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.055][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:40.056][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:40.057][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.059][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:40.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:40.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.064][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.065][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:40.067][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:40.068][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.069][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.070][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:40.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:40.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.074][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.075][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:40.077][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:40.078][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.079][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:40.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:40.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.084][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.089][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.094][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.099][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.104][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.109][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.114][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.118][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.128][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.133][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:40.134][self$createEntryFromContent] Accession numbers: 70861. biodb.TRACE[2025-08-09 16:03:40.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.145][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.150][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.155][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:40.156][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:40.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:40.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:40.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:40.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:40.169][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:40.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:40.172][private$loadEntries] Creating entries from ids [1]: "78662". biodb.DEBUG[2025-08-09 16:03:40.173][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:40.175][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:40.192][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml. biodb.DEBUG[2025-08-09 16:03:40.194][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:40.196][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:40.197][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:40.199][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:40.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:40.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:40.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:40.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:40.210][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:40.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:40.214][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.215][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.216][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.217][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.223][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.224][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:40.225][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:40.226][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.227][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.229][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:40.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:40.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.233][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.234][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:40.235][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:40.236][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.237][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:40.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:40.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.243][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.244][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:40.245][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:40.246][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.247][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:40.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:40.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.253][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.254][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:40.255][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:40.256][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.257][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:40.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:40.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.263][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.264][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:40.265][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:40.266][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.267][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.269][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:40.270][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.271][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.272][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.274][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.278][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.279][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.280][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.281][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.282][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.287][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.289][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:40.290][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:40.291][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.292][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:40.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:40.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.298][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.299][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:40.300][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:40.301][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.303][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.304][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:40.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:40.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.308][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.309][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:40.310][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:40.311][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.312][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:40.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:40.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.318][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.323][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.327][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.332][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.337][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.342][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.347][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.351][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.361][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.367][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.372][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:40.373][self$createEntryFromContent] Accession numbers: 78662. biodb.TRACE[2025-08-09 16:03:40.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.378][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.383][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.387][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:40.389][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:40.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:40.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:40.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:40.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:40.400][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:40.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:40.402][private$loadEntries] Creating entries from ids [1]: "85084". biodb.DEBUG[2025-08-09 16:03:40.404][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:40.405][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:40.422][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml. biodb.DEBUG[2025-08-09 16:03:40.423][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:40.425][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:40.426][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:40.428][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:40.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:40.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:40.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:40.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:40.439][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:40.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:40.443][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.444][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.446][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.447][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.452][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.453][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:40.455][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:40.456][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.457][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:40.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:40.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.462][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.463][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:40.465][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:40.466][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.467][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:40.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:40.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.472][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.474][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:40.475][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:40.476][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.477][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.479][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:40.480][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:40.481][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.482][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.484][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:40.485][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:40.486][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.487][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.489][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:40.490][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.491][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.492][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.494][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:40.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.497][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.499][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.500][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.501][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.502][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.507][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.509][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:40.510][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:40.511][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.512][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:40.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:40.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.518][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.519][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:40.520][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:40.521][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.522][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.524][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:40.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:40.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.528][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.529][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:40.530][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:40.531][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.533][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.538][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.543][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.547][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.552][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.557][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.562][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.567][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.583][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.588][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:40.589][self$createEntryFromContent] Accession numbers: 85084. biodb.TRACE[2025-08-09 16:03:40.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.594][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.599][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.604][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:40.605][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:40.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:40.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:40.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:40.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:40.616][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:40.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:40.619][private$loadEntries] Creating entries from ids [1]: "85086". biodb.DEBUG[2025-08-09 16:03:40.620][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:40.622][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:40.640][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml. biodb.DEBUG[2025-08-09 16:03:40.642][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:40.644][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:40.645][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:40.647][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:40.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:40.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:40.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:40.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:40.658][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:40.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:40.662][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.664][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.665][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.666][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.671][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.672][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:40.673][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:40.675][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.676][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:40.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:40.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.681][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.682][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:40.683][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:40.685][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.686][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:40.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:40.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.692][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:40.693][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:40.694][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.696][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.697][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:40.698][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:40.700][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.701][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.702][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:40.703][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:40.705][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.706][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.707][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:40.709][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.710][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.712][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.714][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:40.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.719][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.721][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.723][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.725][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.726][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.731][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.732][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:40.734][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:40.735][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.736][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:40.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.741][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.743][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:40.744][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:40.745][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.746][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.748][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:40.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:40.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.751][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.752][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:40.754][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:40.755][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.756][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.761][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.766][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.771][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.775][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.780][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.785][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.790][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.800][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.805][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.810][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:40.811][self$createEntryFromContent] Accession numbers: 85086. biodb.TRACE[2025-08-09 16:03:40.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.816][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.821][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.826][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:40.827][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:40.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:40.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:40.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:40.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:40.838][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:40.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:40.841][private$loadEntries] Creating entries from ids [1]: "88123". biodb.DEBUG[2025-08-09 16:03:40.842][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:40.844][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:40.862][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml. biodb.DEBUG[2025-08-09 16:03:40.863][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:40.865][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:40.866][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:40.868][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:40.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:40.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:40.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:40.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:40.879][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:40.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:40.883][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.884][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.885][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.886][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:40.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.891][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.893][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:40.894][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:40.895][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.896][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.903][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:40.904][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:40.905][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.906][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:40.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.911][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.913][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:40.914][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:40.915][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.916][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:40.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:40.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.921][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.923][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:40.924][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:40.925][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.926][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:40.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:40.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.931][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.933][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:40.934][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:40.935][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.936][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.938][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:40.939][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.940][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.941][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.943][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:40.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:40.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.946][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.948][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.949][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.950][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.951][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:40.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.956][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.958][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:40.959][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:40.960][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.961][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:40.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:40.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.968][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:40.969][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:40.970][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.971][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.973][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:40.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:40.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.976][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.978][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:40.979][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:40.980][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.981][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:40.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:40.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.986][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.991][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:40.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:40.996][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:40.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:40.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.001][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.005][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.016][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.021][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.026][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.031][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.035][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.040][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:41.042][self$createEntryFromContent] Accession numbers: 88123. biodb.TRACE[2025-08-09 16:03:41.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.046][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.051][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.056][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:41.057][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:41.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:41.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:41.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:41.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:41.068][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:41.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:41.071][private$loadEntries] Creating entries from ids [1]: "134117". biodb.DEBUG[2025-08-09 16:03:41.072][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:41.074][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:41.092][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml. biodb.DEBUG[2025-08-09 16:03:41.094][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:41.095][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:41.097][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:41.099][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:41.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:41.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:41.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:41.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:41.110][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:41.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:41.114][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.115][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.116][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.117][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.124][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:41.125][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:41.126][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.127][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.129][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:41.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:41.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.132][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.134][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:41.135][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:41.136][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.137][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:41.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:41.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.142][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.144][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:41.145][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:41.146][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.147][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:41.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:41.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.152][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.154][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:41.155][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:41.156][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.157][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:41.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:41.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.162][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.164][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:41.165][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:41.166][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.167][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.169][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:41.170][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.171][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.172][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.174][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:41.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.177][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.179][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.180][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.181][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.182][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.189][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:41.190][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:41.191][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.192][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:41.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.198][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.199][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:41.200][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:41.201][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.203][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.204][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:41.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:41.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.208][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.209][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:41.210][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:41.211][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.212][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:41.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:41.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.218][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.223][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.233][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.238][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.243][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.248][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.253][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.258][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.263][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.268][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.272][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:41.274][self$createEntryFromContent] Accession numbers: 134117. biodb.TRACE[2025-08-09 16:03:41.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.279][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.283][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.288][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:41.289][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:41.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:41.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:41.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:41.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:41.300][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:41.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:41.303][private$loadEntries] Creating entries from ids [1]: "138307". biodb.DEBUG[2025-08-09 16:03:41.304][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:41.306][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:41.324][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml. biodb.DEBUG[2025-08-09 16:03:41.326][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:41.328][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:41.330][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:41.332][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:41.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:41.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:41.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:41.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:41.343][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:41.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:41.347][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.348][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.350][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.351][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.356][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.357][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:41.359][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:41.360][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.361][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.363][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:41.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:41.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.366][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.368][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:41.369][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:41.370][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.371][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.373][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:41.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:41.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.376][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.378][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:41.379][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:41.380][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.381][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:41.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:41.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.387][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.388][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:41.389][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:41.390][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.391][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:41.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.397][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.398][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:41.399][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:41.401][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.402][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.403][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:41.404][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.406][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.407][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.408][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:41.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.412][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.413][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.415][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.416][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.417][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.422][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.423][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:41.425][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:41.426][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.427][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:41.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:41.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.432][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.434][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:41.435][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:41.436][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.437][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:41.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.444][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:41.450][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:41.452][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.453][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:41.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.458][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.463][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.468][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.473][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.478][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.483][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.488][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.493][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.498][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.503][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.507][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:41.509][self$createEntryFromContent] Accession numbers: 138307. biodb.TRACE[2025-08-09 16:03:41.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.514][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.518][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.523][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:41.525][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:41.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:41.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:41.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:41.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:41.536][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:41.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:41.538][private$loadEntries] Creating entries from ids [1]: "176803". biodb.DEBUG[2025-08-09 16:03:41.540][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:41.541][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:41.560][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml. biodb.DEBUG[2025-08-09 16:03:41.562][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:41.563][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:41.565][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:41.567][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:41.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:41.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:41.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:41.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:41.578][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:41.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:41.582][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.583][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.584][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.585][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.592][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:41.593][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:41.594][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.595][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.597][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:41.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.601][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.602][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:41.603][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:41.604][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.606][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:41.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:41.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.611][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.612][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:41.613][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:41.614][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.616][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:41.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:41.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.621][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.622][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:41.623][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:41.625][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.626][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:41.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:41.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.631][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.635][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:41.636][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:41.638][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.639][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.640][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:41.642][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.643][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.644][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.645][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:41.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.649][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.650][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.652][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.653][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.654][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.659][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.660][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:41.662][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:41.663][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.664][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:41.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:41.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.675][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.677][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:41.678][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:41.679][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.680][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.682][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:41.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:41.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.685][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.687][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:41.688][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:41.689][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.690][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:41.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:41.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.696][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.714][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.719][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.724][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.729][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.734][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.739][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.743][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.748][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:41.750][self$createEntryFromContent] Accession numbers: 176803. biodb.TRACE[2025-08-09 16:03:41.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.755][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.759][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.764][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:41.766][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:41.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:41.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:41.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:41.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:41.777][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:41.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:41.780][private$loadEntries] Creating entries from ids [1]: "176962". biodb.DEBUG[2025-08-09 16:03:41.781][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:41.783][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:41.800][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml. biodb.DEBUG[2025-08-09 16:03:41.802][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:41.803][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:41.805][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:41.807][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:41.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:41.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:41.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:41.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:41.818][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:41.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:41.822][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.824][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.825][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.826][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.831][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.833][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:41.834][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:41.835][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.836][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.838][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:41.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:41.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.842][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.843][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:41.844][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:41.845][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.847][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.848][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:41.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:41.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.852][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.853][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:41.855][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:41.856][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.857][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:41.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:41.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.862][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.863][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:41.865][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:41.866][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.867][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:41.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:41.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.872][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.874][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:41.875][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:41.876][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.877][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.879][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:41.880][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.881][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.882][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.884][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:41.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.893][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.895][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.896][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.897][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.898][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:41.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.904][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.905][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:41.906][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:41.908][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.909][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:41.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:41.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.914][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.915][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:41.917][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:41.918][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.919][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.921][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:41.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:41.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.924][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.926][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:41.927][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:41.928][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.929][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:41.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:41.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.934][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.939][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.944][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.949][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:41.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.954][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.959][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.964][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.969][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.974][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:41.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:41.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.984][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:41.985][self$createEntryFromContent] Accession numbers: 176962. biodb.TRACE[2025-08-09 16:03:41.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.990][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:41.995][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:41.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:41.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.000][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.001][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.012][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:42.015][private$loadEntries] Creating entries from ids [1]: "198655". biodb.DEBUG[2025-08-09 16:03:42.016][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:42.018][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:42.034][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml. biodb.DEBUG[2025-08-09 16:03:42.035][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:42.037][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:42.039][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:42.040][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.051][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.055][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.056][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.058][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.059][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.064][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.065][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:42.066][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:42.068][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.069][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.070][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:42.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:42.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.074][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.075][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:42.076][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:42.078][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.079][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:42.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:42.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.084][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.085][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:42.087][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:42.088][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.089][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:42.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:42.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.094][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.095][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:42.096][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:42.098][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.099][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:42.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:42.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.110][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.111][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:42.112][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:42.114][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.115][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.116][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:42.118][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.119][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.120][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.121][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:42.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.125][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.126][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:42.128][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:42.129][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.130][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:42.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.136][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:42.138][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:42.139][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.140][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:42.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:42.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.145][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.147][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:42.148][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:42.149][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.150][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.152][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:42.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:42.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.155][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.157][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:42.158][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:42.159][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.160][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:42.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:42.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.165][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:42.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.170][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:42.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:42.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.175][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:42.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:42.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.185][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.189][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.194][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.199][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.204][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.209][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.214][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.215][self$createEntryFromContent] Accession numbers: 198655. biodb.TRACE[2025-08-09 16:03:42.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.220][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.225][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.229][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.231][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.242][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:42.244][private$loadEntries] Creating entries from ids [1]: "215045". biodb.DEBUG[2025-08-09 16:03:42.245][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:42.247][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:42.264][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml. biodb.DEBUG[2025-08-09 16:03:42.266][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:42.267][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:42.269][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:42.271][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.282][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.285][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.287][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.288][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.289][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.294][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.295][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:42.296][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:42.298][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.299][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.300][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:42.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:42.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.304][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.305][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:42.306][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:42.308][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.309][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:42.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:42.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.319][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.321][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:42.322][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:42.323][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.325][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:42.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:42.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.330][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.331][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:42.332][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:42.333][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.334][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:42.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:42.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.340][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.341][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:42.342][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:42.343][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.345][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.346][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:42.347][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.348][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.350][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.351][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:42.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.355][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.356][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:42.357][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:42.358][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.360][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:42.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:42.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.365][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.366][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:42.367][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:42.368][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.370][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:42.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:42.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.375][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.376][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:42.377][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:42.379][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.380][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:42.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:42.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.385][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.386][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:42.387][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:42.389][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.390][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:42.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:42.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.395][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:42.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:42.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.400][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:42.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:42.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.405][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.409][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:42.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:42.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.414][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.419][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.424][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.429][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.434][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.438][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:42.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:42.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.443][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.445][self$createEntryFromContent] Accession numbers: 215045. biodb.TRACE[2025-08-09 16:03:42.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.449][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.454][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.459][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:42.485][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:42.488][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:42.491][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content. sched.DEBUG[2025-08-09 16:03:42.492][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:42.495][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.507][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.523][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.530][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.541][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.547][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.552][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.557][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.562][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.566][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.568][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.579][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.585][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.590][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.595][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.600][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.605][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.606][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.617][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.624][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.628][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.633][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.638][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.643][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.645][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.656][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.662][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.667][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.672][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.673][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.684][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.690][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.696][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.702][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.703][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.714][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.731][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.736][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.737][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.748][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.754][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.759][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.764][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.765][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.776][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.783][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.787][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.792][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.793][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.804][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.811][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.815][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.820][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.822][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.833][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.839][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.844][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.848][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.850][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.861][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.878][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.889][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.900][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.905][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.906][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.917][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.923][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.938][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.940][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.951][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.957][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.967][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.968][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:42.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:42.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:42.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:42.980][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:42.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:42.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.986][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.991][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:42.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:42.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:42.997][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:42.998][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:42.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.009][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:43.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.015][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.025][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:43.026][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.038][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:43.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.044][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.048][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:43.054][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.066][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:43.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.072][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.077][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.081][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:43.083][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.094][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:43.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.100][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.105][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.109][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.143][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.149][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.154][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.158][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.163][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:43.186][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:43.189][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:43.204][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/63dc67d905e130c19900bd338bad7ba9.content. sched.DEBUG[2025-08-09 16:03:43.205][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. sched.DEBUG[2025-08-09 16:03:43.209][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:43.212][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:43.229][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/287cac4c6e727656d926f26e3952924c.content. sched.DEBUG[2025-08-09 16:03:43.230][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:43.233][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.245][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:43.247][private$loadEntries] Creating entries from ids [1]: "4648". biodb.DEBUG[2025-08-09 16:03:43.248][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:43.250][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:43.268][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml. biodb.DEBUG[2025-08-09 16:03:43.270][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:43.271][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:43.273][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:43.274][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.286][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:43.289][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.291][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.292][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.293][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.298][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.299][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:43.301][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:43.302][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.303][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.304][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:43.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:43.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.308][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.309][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:43.310][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:43.312][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.313][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.314][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:43.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:43.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.318][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.319][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:43.321][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:43.322][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.323][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:43.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:43.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.328][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.329][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:43.330][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:43.332][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.333][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:43.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:43.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.338][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.339][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:43.340][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:43.342][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.343][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.344][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:43.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:43.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.349][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:43.350][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.351][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.352][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.354][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:43.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.357][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.359][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.360][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.361][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.362][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.373][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.375][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:43.376][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:43.377][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.379][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:43.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:43.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.384][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.385][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:43.386][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:43.388][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.389][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:43.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:43.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.394][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.395][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:43.396][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:43.397][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.399][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:43.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:43.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.404][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:43.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:43.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.409][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:43.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:43.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.413][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.418][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:43.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:43.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.423][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.428][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.433][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.438][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.443][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.447][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.452][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:43.453][self$createEntryFromContent] Accession numbers: 4648. biodb.TRACE[2025-08-09 16:03:43.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.458][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.463][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.468][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:43.469][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.481][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:43.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.487][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.491][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.496][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:43.497][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.508][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:43.511][private$loadEntries] Creating entries from ids [1]: "62447". biodb.DEBUG[2025-08-09 16:03:43.512][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:43.514][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:43.532][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml. biodb.DEBUG[2025-08-09 16:03:43.534][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:43.535][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:43.537][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:43.539][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.550][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:43.554][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.555][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.556][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.557][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.562][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.564][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:43.565][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:43.566][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.567][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.569][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:43.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:43.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.572][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.574][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:43.575][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:43.576][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.577][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:43.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:43.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.583][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.589][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:43.591][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:43.592][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.594][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:43.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:43.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.599][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.600][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:43.602][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:43.603][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.604][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:43.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:43.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.609][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.610][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:43.612][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:43.613][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.614][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.616][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:43.617][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.618][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.619][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.621][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:43.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:43.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.624][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.626][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.627][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.628][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.629][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.634][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.636][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:43.637][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:43.638][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.639][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:43.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:43.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.645][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.646][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:43.647][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:43.649][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.650][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.651][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:43.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:43.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.655][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.656][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:43.657][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:43.659][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.660][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:43.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:43.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.665][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:43.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:43.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.670][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:43.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:43.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.675][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.680][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:43.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:43.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.684][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.689][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.694][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.699][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.704][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:43.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:43.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.714][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:43.715][self$createEntryFromContent] Accession numbers: 62447. biodb.TRACE[2025-08-09 16:03:43.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.720][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.725][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.730][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:43.755][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:43.758][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:43.761][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content. sched.DEBUG[2025-08-09 16:03:43.763][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:43.766][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.777][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:43.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.783][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.788][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.800][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:43.801][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.812][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:43.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.818][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.823][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.828][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.833][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.838][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:43.839][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.850][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:43.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.856][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.861][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.866][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.871][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.876][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:43.877][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.888][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:43.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.894][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.899][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.904][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.909][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.914][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:43.915][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.926][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:43.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.932][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.937][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:43.943][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.954][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:43.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.961][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.965][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.970][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:43.971][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:43.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:43.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:43.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:43.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:43.983][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:43.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:43.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.989][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:43.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:43.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:43.999][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.005][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.006][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.017][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.033][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.034][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.045][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.051][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.056][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.061][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.062][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.073][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.079][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.084][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.089][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.090][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.101][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.107][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.112][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.117][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.118][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.129][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.135][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.140][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.145][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.146][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.158][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.164][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.169][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.173][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.175][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.186][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.192][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.197][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.207][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.209][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.220][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.226][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.231][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.236][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.237][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.249][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.255][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.260][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.265][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.266][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.277][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.283][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.288][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.293][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.294][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.305][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.311][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.316][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.321][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.322][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.333][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.340][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.344][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.349][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.350][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.363][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.370][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.375][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.379][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:44.405][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:44.407][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:44.411][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content. sched.DEBUG[2025-08-09 16:03:44.412][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:44.421][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.432][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.439][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.444][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.448][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.450][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.461][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.467][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.477][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.482][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.486][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.488][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.499][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.505][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.510][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.515][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.520][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.525][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.526][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.537][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.543][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.548][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.553][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.558][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.563][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.564][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.575][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.581][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.586][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.591][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.592][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.604][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.610][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.615][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.626][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.627][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.638][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.644][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.649][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.654][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.656][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.667][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.673][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.678][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.683][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.684][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.695][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.701][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.706][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.711][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.712][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.723][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.730][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.734][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.739][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.740][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.751][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.758][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.762][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.767][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.769][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.779][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.786][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.790][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.795][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.796][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.808][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.814][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.819][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.829][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.831][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.842][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.848][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.853][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.858][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.859][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.871][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.877][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.882][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.886][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.888][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.899][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.905][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.914][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.916][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.927][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.933][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.937][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.943][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.954][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.961][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.965][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.970][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.971][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:44.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:44.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:44.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:44.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:44.982][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:44.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:44.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.989][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.993][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:44.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:44.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:44.998][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:44.999][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:45.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:45.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:45.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:45.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:45.010][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:45.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:45.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:45.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:45.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.016][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:45.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:45.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.021][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:45.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:45.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.026][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.054][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:03:45.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:03:45.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.058][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.INFO [2025-08-09 16:03:45.070][biodb::testThat] biodb.INFO [2025-08-09 16:03:45.071][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. "). biodb.INFO [2025-08-09 16:03:45.072][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:03:45.073][biodb::testThat] biodb.TRACE[2025-08-09 16:03:45.077][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:03:45.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:03:45.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.081][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.082][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:03:45.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:03:45.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.086][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.087][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:03:45.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:03:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.091][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.096][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.100][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.105][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.110][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.115][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.120][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.125][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.130][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.135][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.140][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.144][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.149][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:45.153][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:45.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:45.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:45.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:45.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:45.164][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:45.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:45.169][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:45.172][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:45.174][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content. sched.DEBUG[2025-08-09 16:03:45.175][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:45.178][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:45.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:45.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:45.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:45.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:45.189][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:45.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:45.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.195][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.200][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.205][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:45.207][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:45.210][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:45.212][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content. sched.DEBUG[2025-08-09 16:03:45.213][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:45.216][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:45.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:45.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:45.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:45.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:45.227][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:45.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:45.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.233][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.244][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.249][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:45.250][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:45.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:45.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:45.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:45.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:45.261][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:45.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:45.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.268][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.272][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.277][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:45.279][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:45.280][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:45.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:45.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:45.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:45.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:45.292][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:45.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:45.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.298][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.302][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.304][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:45.305][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:45.306][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:45.307][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:45.308][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:45.309][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.311][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.312][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.313][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.314][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.315][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.317][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.318][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.319][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:45.320][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:45.321][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.323][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.324][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.325][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.326][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:45.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.331][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.336][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.341][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.350][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288]. biodb.DEBUG[2025-08-09 16:03:45.351][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:45.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:45.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:45.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:45.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:45.362][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:45.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:45.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.368][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.373][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.374][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:45.375][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:45.377][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:45.378][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:45.379][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:45.380][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.381][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.383][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.384][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.385][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.386][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.387][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.389][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.390][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:45.391][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:45.392][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.393][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.395][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.396][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.397][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:45.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.407][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.411][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.413][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440]. biodb.DEBUG[2025-08-09 16:03:45.414][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:45.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:45.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:45.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:45.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:45.425][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:45.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:45.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.437][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.443][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.444][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:45.445][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:45.446][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:45.447][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:45.448][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:45.450][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.451][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.452][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.453][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.454][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.456][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.457][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.458][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.459][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:45.460][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:45.461][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.463][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.464][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.465][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.466][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.471][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.476][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.481][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.482][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892]. biodb.DEBUG[2025-08-09 16:03:45.483][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:45.485][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:03:45.488][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:45.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:45.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:45.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:45.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:45.499][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:45.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:45.503][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:45.506][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:45.522][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content. sched.DEBUG[2025-08-09 16:03:45.523][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:45.526][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:45.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:45.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:45.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:45.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:45.537][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:45.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:45.539][private$loadEntries] Creating entries from ids [1]: "113227". biodb.DEBUG[2025-08-09 16:03:45.540][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:45.542][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:45.558][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml. biodb.DEBUG[2025-08-09 16:03:45.559][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:45.561][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:45.562][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:45.564][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:45.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:45.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:45.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:45.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:45.575][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:45.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:45.579][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.580][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.581][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.582][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.588][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.589][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:45.590][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:45.591][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.592][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.594][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:45.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:45.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.597][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.599][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:45.600][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:45.601][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.602][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:45.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:45.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.608][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.609][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:45.610][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:45.611][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.612][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:45.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:45.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.618][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.619][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:45.620][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:45.621][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.622][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:45.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:45.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.627][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.629][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:45.630][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:45.631][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.632][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.634][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:45.635][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.636][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.637][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.639][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:45.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.642][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.644][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:45.645][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:45.646][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.647][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:45.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:45.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.652][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.659][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:45.661][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:45.662][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.664][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:45.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:45.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.669][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.670][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:45.672][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:45.673][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.674][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.675][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:45.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:45.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.679][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.680][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:45.682][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:45.683][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.684][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:45.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:45.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.689][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.694][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.699][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.704][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.714][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.719][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.723][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.728][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.733][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:45.739][self$createEntryFromContent] Accession numbers: 113227. biodb.TRACE[2025-08-09 16:03:45.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.744][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.749][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:45.755][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:45.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:45.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:45.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:45.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:45.767][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:45.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:45.770][private$loadEntries] Creating entries from ids [1]: "169712". biodb.DEBUG[2025-08-09 16:03:45.772][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:45.773][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:45.790][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml. biodb.DEBUG[2025-08-09 16:03:45.792][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:45.793][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:45.795][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:45.796][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:45.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:45.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:45.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:45.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:45.808][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:45.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:45.812][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.813][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.814][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.815][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.820][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.822][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:45.823][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:45.824][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.825][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.827][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:45.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:45.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.830][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.832][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:45.833][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:45.834][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.835][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:45.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:45.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.841][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.842][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:45.843][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:45.844][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.846][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:45.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:45.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.851][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.852][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:45.853][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:45.854][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.855][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:45.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:45.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.861][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.862][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:45.863][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:45.864][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.865][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.867][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:45.874][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.875][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.877][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.879][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:45.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.882][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.884][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:45.885][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:45.886][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.887][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:45.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:45.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.892][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.893][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:45.895][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:45.896][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.897][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:45.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:45.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.904][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:45.905][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:45.906][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.907][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:45.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:45.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.912][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.914][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:45.915][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:45.916][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.917][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:45.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:45.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.922][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.927][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.932][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.937][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:45.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.947][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.951][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.956][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.966][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:45.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:45.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.971][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:45.972][self$createEntryFromContent] Accession numbers: 169712. biodb.TRACE[2025-08-09 16:03:45.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.977][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.982][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:45.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:45.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:45.987][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:45.989][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:45.992][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:46.010][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content. sched.DEBUG[2025-08-09 16:03:46.011][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:46.015][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:46.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:46.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:46.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:46.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:46.026][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:46.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:46.028][private$loadEntries] Creating entries from ids [1]: "4781". biodb.DEBUG[2025-08-09 16:03:46.030][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:46.031][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:46.051][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml. biodb.DEBUG[2025-08-09 16:03:46.053][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:46.054][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:46.056][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:46.058][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:46.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:46.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:46.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:46.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:46.069][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:46.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:46.073][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.074][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.076][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.077][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.082][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.083][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:46.085][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:46.086][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.087][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.088][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:46.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:46.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.092][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.093][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:46.095][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:46.096][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.097][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:46.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.108][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.110][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:46.111][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:46.113][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.114][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:46.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:46.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.119][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.120][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:46.122][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:46.123][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.124][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:46.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:46.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.129][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.130][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:46.131][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:46.133][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.134][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.135][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:46.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.139][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.140][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:46.141][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.143][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.144][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.145][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:46.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.149][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.150][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:46.152][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:46.153][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.154][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:46.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:46.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.159][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.160][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:46.161][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:46.163][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.164][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:46.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.169][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.170][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:46.172][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:46.173][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.174][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:46.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:46.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.179][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.180][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:46.182][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:46.183][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.184][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:46.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.194][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.199][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.204][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.208][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.213][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.218][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.223][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.228][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.233][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.238][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:46.239][self$createEntryFromContent] Accession numbers: 4781. biodb.TRACE[2025-08-09 16:03:46.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.244][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.249][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.253][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:46.255][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:46.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:46.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:46.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:46.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:46.266][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:46.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:46.268][private$loadEntries] Creating entries from ids [1]: "16587". biodb.DEBUG[2025-08-09 16:03:46.270][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:46.271][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:46.290][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml. biodb.DEBUG[2025-08-09 16:03:46.291][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:46.293][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:46.294][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:46.296][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:46.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:46.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:46.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:46.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:46.308][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:46.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:46.311][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.318][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.320][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.321][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.327][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.328][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:46.329][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:46.330][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.331][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:46.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:46.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.337][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.338][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:46.339][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:46.340][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.342][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:46.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.347][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.348][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:46.349][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:46.351][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.352][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:46.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:46.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.357][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.358][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:46.359][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:46.361][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.362][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:46.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:46.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.367][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.368][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:46.369][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:46.371][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.372][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.373][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:46.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:46.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.377][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.378][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:46.379][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.381][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.382][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.383][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:46.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.387][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.388][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:46.389][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:46.391][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.392][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:46.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:46.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.397][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.398][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:46.399][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:46.401][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.402][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:46.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:46.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.407][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.409][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:46.410][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:46.411][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.412][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.414][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:46.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:46.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.417][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.419][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:46.420][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:46.421][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.422][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:46.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.427][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.432][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.437][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.442][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.447][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.451][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.456][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.461][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.466][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.471][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.476][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:46.477][self$createEntryFromContent] Accession numbers: 16587. biodb.TRACE[2025-08-09 16:03:46.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.482][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.487][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.492][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:46.493][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:46.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:46.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:46.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:46.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:46.504][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:46.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:46.512][private$loadEntries] Creating entries from ids [1]: "19804". biodb.DEBUG[2025-08-09 16:03:46.514][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:46.516][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:46.535][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml. biodb.DEBUG[2025-08-09 16:03:46.537][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:46.538][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:46.540][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:46.542][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:46.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:46.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:46.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:46.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:46.553][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:46.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:46.557][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.558][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.559][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.560][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.565][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.567][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:46.568][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:46.569][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.570][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.572][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:46.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:46.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.576][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.577][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:46.578][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:46.579][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.581][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.582][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:46.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:46.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.586][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.587][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:46.588][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:46.589][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.591][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:46.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:46.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.596][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.597][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:46.598][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:46.599][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.601][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:46.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:46.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.606][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.607][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:46.608][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:46.609][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.611][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.612][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:46.613][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.614][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.616][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.617][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:46.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.622][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:46.623][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:46.625][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.626][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:46.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:46.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.631][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.632][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:46.634][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:46.635][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.636][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:46.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:46.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.641][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.643][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:46.644][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:46.645][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.646][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.648][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:46.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:46.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.652][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.653][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:46.654][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:46.655][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.657][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:46.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:46.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.662][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.667][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.672][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.676][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.681][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.686][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.691][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.696][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.701][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.708][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:46.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:46.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.715][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:46.717][self$createEntryFromContent] Accession numbers: 19804. biodb.TRACE[2025-08-09 16:03:46.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.722][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.733][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:46.760][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:46.781][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:46.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:46.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:46.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:46.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:46.793][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:46.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:46.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.799][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.805][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:46.806][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:46.808][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:46.809][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:46.810][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:46.811][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.812][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.813][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.815][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.816][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.817][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.818][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.819][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.821][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:46.822][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:46.823][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.824][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.825][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.826][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.828][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:46.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.833][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.837][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.842][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.844][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:03:46.845][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:46.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:46.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:46.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:46.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:46.856][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:46.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:46.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.862][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.867][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.868][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:46.869][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:46.871][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:46.872][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:46.873][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:46.874][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.875][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.877][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.878][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.879][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.880][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.881][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.882][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.884][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:46.885][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:46.886][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.893][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.894][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.896][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.897][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:46.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.907][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.912][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587]. biodb.DEBUG[2025-08-09 16:03:46.915][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:46.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:46.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:46.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:46.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:46.926][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:46.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:46.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.932][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.937][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.938][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:46.939][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:46.940][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:46.942][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:46.943][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:46.944][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.945][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.946][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.947][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.949][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.950][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.951][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.952][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.953][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:46.955][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:46.956][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.957][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.958][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.959][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.961][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:46.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.970][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:46.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:46.975][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:46.977][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804]. biodb.DEBUG[2025-08-09 16:03:46.978][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:46.979][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:03:46.981][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:46.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:46.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:46.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:46.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:46.992][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:46.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:46.996][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:46.999][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:47.017][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content. sched.DEBUG[2025-08-09 16:03:47.018][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:47.021][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:47.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:47.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:47.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:47.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:47.032][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:47.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:47.035][private$loadEntries] Creating entries from ids [1]: "159630". biodb.DEBUG[2025-08-09 16:03:47.036][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:47.038][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:47.054][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml. biodb.DEBUG[2025-08-09 16:03:47.056][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:47.057][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:47.059][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:47.061][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:47.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:47.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:47.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:47.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:47.072][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:47.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:47.076][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.077][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.079][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.080][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.085][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.086][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:47.087][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:47.089][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.090][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.091][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:47.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:47.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.095][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.096][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:47.097][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:47.099][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.100][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:47.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:47.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.105][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.106][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:47.108][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:47.109][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.110][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:47.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.115][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.122][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:47.124][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:47.125][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.126][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:47.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:47.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.132][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.133][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:47.134][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:47.135][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.137][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.138][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:47.139][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.140][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.142][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.143][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:47.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.147][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.148][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:47.149][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:47.150][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.152][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:47.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:47.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.157][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.158][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:47.159][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:47.160][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.161][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:47.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:47.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.167][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.168][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:47.169][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:47.170][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.172][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.173][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:47.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:47.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.177][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.178][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:47.179][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:47.180][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.181][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:47.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:47.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.187][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.193][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.198][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.203][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.208][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.213][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.218][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.223][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.228][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.232][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.237][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:47.238][self$createEntryFromContent] Accession numbers: 159630. biodb.TRACE[2025-08-09 16:03:47.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.243][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.248][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.253][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:47.254][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:47.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:47.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:47.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:47.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:47.265][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:47.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:47.268][private$loadEntries] Creating entries from ids [1]: "160202". biodb.DEBUG[2025-08-09 16:03:47.269][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:47.271][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:47.289][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml. biodb.DEBUG[2025-08-09 16:03:47.290][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:47.292][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:47.294][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:47.295][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:47.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:47.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:47.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:47.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:47.307][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:47.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:47.311][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.312][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.313][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.314][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.319][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.321][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:47.322][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:47.323][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.324][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:47.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:47.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.335][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.337][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:47.339][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:47.340][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.341][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:47.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:47.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.348][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:47.349][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:47.350][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.352][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:47.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:47.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.357][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.358][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:47.359][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:47.361][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.362][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:47.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:47.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.367][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.368][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:47.369][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:47.371][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.372][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.373][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:47.375][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.376][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.377][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.378][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:47.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.382][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.383][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:47.385][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:47.386][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.387][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:47.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:47.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.392][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.393][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:47.395][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:47.396][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.397][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:47.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:47.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.402][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.403][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:47.405][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:47.406][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.407][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.408][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:47.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:47.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.412][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.414][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:47.415][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:47.416][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.417][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:47.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:47.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.422][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.427][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.432][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.437][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.442][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.447][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.451][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.456][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.461][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.466][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.471][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:47.472][self$createEntryFromContent] Accession numbers: 160202. biodb.TRACE[2025-08-09 16:03:47.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.477][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.482][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.487][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:47.488][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:47.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:47.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:47.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:47.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:47.499][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:47.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:47.501][private$loadEntries] Creating entries from ids [1]: "160393". biodb.DEBUG[2025-08-09 16:03:47.503][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:47.504][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:47.522][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml. biodb.DEBUG[2025-08-09 16:03:47.525][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:47.527][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:47.529][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:47.530][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:47.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:47.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:47.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:47.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:47.699][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:47.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:47.704][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.705][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.706][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.707][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.712][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.714][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:47.715][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:47.716][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.717][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.719][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:47.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:47.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.722][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.724][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:47.725][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:47.726][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.727][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:47.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:47.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.732][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.734][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:47.735][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:47.736][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.737][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:47.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:47.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.742][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.744][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:47.745][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:47.746][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.747][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:47.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:47.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.752][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.753][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:47.755][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:47.756][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.757][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.758][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:47.760][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.761][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.762][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.763][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:47.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.767][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.768][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:47.769][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:47.771][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.772][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:47.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:47.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.777][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.778][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:47.779][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:47.781][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.782][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.783][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:47.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:47.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.787][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.788][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:47.790][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:47.791][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.792][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:47.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:47.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.798][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.799][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:47.800][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:47.801][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.802][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:47.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:47.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.807][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.812][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.817][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.822][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:47.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.827][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.836][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.841][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.846][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.851][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.856][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:47.857][self$createEntryFromContent] Accession numbers: 160393. biodb.TRACE[2025-08-09 16:03:47.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.862][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.867][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.871][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:47.873][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:47.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:47.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:47.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:47.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:47.884][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:47.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:47.886][private$loadEntries] Creating entries from ids [1]: "160991". biodb.DEBUG[2025-08-09 16:03:47.888][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:47.890][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:47.907][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml. biodb.DEBUG[2025-08-09 16:03:47.909][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:47.915][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:47.916][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:47.918][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:47.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:47.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:47.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:47.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:47.929][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:47.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:47.933][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.934][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.935][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.936][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:47.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:47.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.941][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.943][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:47.944][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:47.945][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.946][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.948][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:47.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:47.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.951][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.952][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:47.954][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:47.955][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.956][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:47.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:47.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.961][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.963][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:47.964][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:47.965][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.966][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:47.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:47.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.971][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.972][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:47.974][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:47.975][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.976][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:47.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:47.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.981][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.982][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:47.983][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:47.985][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.986][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.987][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:47.988][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.989][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.991][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.992][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:47.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:47.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:47.996][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:47.997][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:47.998][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:47.999][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.000][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.005][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.007][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:48.008][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:48.009][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.010][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:48.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:48.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.015][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.017][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:48.018][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:48.019][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.020][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.022][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:48.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:48.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.025][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.026][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:48.028][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:48.029][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.030][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:48.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:48.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.035][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.040][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.044][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.049][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.054][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.059][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.064][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.068][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.073][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.078][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.083][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:48.084][self$createEntryFromContent] Accession numbers: 160991. biodb.TRACE[2025-08-09 16:03:48.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.089][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.094][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.098][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:48.100][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:48.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:48.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:48.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:48.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:48.115][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:48.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:48.117][private$loadEntries] Creating entries from ids [1]: "164975". biodb.DEBUG[2025-08-09 16:03:48.119][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:48.120][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:48.138][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml. biodb.DEBUG[2025-08-09 16:03:48.139][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:48.141][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:48.142][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:48.144][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:48.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:48.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:48.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:48.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:48.155][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:48.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:48.159][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.160][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.161][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.162][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.167][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.168][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:48.170][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:48.171][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.172][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.173][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:48.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:48.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.177][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.178][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:48.179][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:48.181][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.182][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:48.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:48.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.187][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.188][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:48.189][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:48.191][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.192][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:48.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:48.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.197][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.198][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:48.199][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:48.200][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.201][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:48.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:48.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.206][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.208][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:48.209][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:48.210][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.211][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.213][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:48.214][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.215][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.216][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.218][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:48.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.221][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.222][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.224][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.225][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.226][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.231][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.232][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:48.233][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:48.234][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.236][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:48.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:48.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.241][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.242][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:48.243][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:48.244][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.246][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.247][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:48.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:48.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.251][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.252][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:48.253][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:48.254][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.255][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:48.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:48.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.260][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.265][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.270][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.275][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.280][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.289][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.294][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.299][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.304][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.309][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:48.310][self$createEntryFromContent] Accession numbers: 164975. biodb.TRACE[2025-08-09 16:03:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.315][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.329][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:48.330][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:48.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:48.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:48.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:48.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:48.341][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:48.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:48.343][private$loadEntries] Creating entries from ids [1]: "164994". biodb.DEBUG[2025-08-09 16:03:48.344][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:48.346][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:48.363][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml. biodb.DEBUG[2025-08-09 16:03:48.365][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:48.367][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:48.368][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:48.370][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:48.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:48.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:48.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:48.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:48.381][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:48.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:48.385][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.386][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.387][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.388][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.393][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.395][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:48.396][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:48.397][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.398][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.399][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:48.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:48.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.403][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.404][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:48.406][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:48.407][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.408][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:48.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:48.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.413][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.414][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:48.416][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:48.417][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.418][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:48.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:48.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.423][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.424][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:48.425][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:48.427][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.428][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:48.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:48.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.433][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.434][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:48.435][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:48.436][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.438][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.439][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:48.440][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.441][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.442][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.444][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:48.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.447][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.449][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.450][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.451][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.452][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.457][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.459][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:48.460][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:48.461][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.462][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:48.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:48.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.469][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:48.470][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:48.471][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.472][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:48.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:48.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.477][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.479][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:48.480][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:48.481][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.482][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:48.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:48.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.487][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.492][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.497][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.502][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.507][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.511][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.516][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.521][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.526][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.531][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.540][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:48.541][self$createEntryFromContent] Accession numbers: 164994. biodb.TRACE[2025-08-09 16:03:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.546][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.551][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.556][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:48.557][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:48.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:48.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:48.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:48.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:48.568][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:48.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:48.570][private$loadEntries] Creating entries from ids [1]: "169251". biodb.DEBUG[2025-08-09 16:03:48.571][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:48.573][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:48.592][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml. biodb.DEBUG[2025-08-09 16:03:48.594][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:48.595][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:48.597][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:48.598][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:48.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:48.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:48.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:48.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:48.609][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:48.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:48.613][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.614][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.616][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.617][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.622][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.623][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:48.624][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:48.625][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.627][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.628][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:48.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:48.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.632][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.633][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:48.634][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:48.635][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.637][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:48.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.642][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.643][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:48.645][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:48.646][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.647][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.652][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.653][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:48.654][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:48.656][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.657][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:48.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:48.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.662][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.663][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:48.664][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:48.665][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.666][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.668][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:48.669][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.670][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.671][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.673][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:48.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.676][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.678][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.679][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.680][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.681][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.686][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.688][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:48.689][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:48.690][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.691][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:48.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:48.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.696][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.698][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:48.699][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:48.700][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.701][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:48.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:48.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.706][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.708][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:48.709][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:48.710][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.712][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:48.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:48.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.718][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.723][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.728][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.733][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.738][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.743][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.747][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.757][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.762][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.767][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.772][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:48.773][self$createEntryFromContent] Accession numbers: 169251. biodb.TRACE[2025-08-09 16:03:48.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.778][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.783][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.787][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:48.788][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:48.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:48.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:48.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:48.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:48.800][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:48.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:48.802][private$loadEntries] Creating entries from ids [1]: "224261". biodb.DEBUG[2025-08-09 16:03:48.803][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:48.805][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:48.823][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml. biodb.DEBUG[2025-08-09 16:03:48.824][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:48.826][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:48.827][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:48.829][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:48.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:48.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:48.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:48.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:48.840][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:48.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:48.844][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.845][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.846][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.847][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.852][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.854][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:48.855][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:48.856][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.857][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.859][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:48.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:48.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.862][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.864][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:48.865][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:48.866][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.867][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.869][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:48.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:48.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.872][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.874][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:48.875][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:48.876][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.877][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:48.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:48.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.882][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.884][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:48.885][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:48.886][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.887][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:48.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:48.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.892][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.893][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:48.895][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:48.896][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.897][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.898][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:48.900][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.901][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.902][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.903][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:48.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:48.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.908][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.910][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.911][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.912][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:48.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.917][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.918][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:48.920][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:48.921][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.922][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:48.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:48.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.927][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.928][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:48.930][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:48.931][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.932][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.934][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:48.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:48.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.937][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.938][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:48.940][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:48.941][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.942][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:48.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:48.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.947][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.952][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.957][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:48.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.971][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.976][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.981][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.985][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.990][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:48.995][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:48.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:48.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:48.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.000][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:49.001][self$createEntryFromContent] Accession numbers: 224261. biodb.TRACE[2025-08-09 16:03:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.006][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.011][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.016][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:49.018][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:49.021][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:49.038][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content. sched.DEBUG[2025-08-09 16:03:49.039][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:49.042][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:49.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:49.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:49.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:49.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:49.053][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:49.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:49.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.059][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.064][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.069][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:49.070][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:49.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:49.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:49.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:49.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:49.082][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:49.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:49.084][private$loadEntries] Creating entries from ids [1]: "71954". biodb.DEBUG[2025-08-09 16:03:49.085][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:49.087][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:49.107][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml. biodb.DEBUG[2025-08-09 16:03:49.108][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:49.110][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:49.111][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:49.113][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:49.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:49.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:49.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:49.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:49.124][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:49.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:49.128][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.129][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.131][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.132][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.137][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.138][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:49.139][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:49.140][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.142][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:49.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:49.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.147][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.148][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:49.149][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:49.151][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.152][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:49.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:49.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.157][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.158][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:49.159][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:49.160][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.162][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:49.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:49.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.167][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.168][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:49.169][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:49.171][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.172][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:49.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:49.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.177][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.178][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:49.179][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:49.181][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.182][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.183][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:49.184][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.186][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.187][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.188][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:49.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.192][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.193][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.194][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.196][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.197][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.206][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.208][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:49.209][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:49.210][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.211][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:49.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:49.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.216][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.218][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:49.219][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:49.220][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.221][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.223][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:49.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:49.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.226][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.228][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:49.229][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:49.230][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.231][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:49.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:49.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.236][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.241][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.246][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.251][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.255][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.260][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.265][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.270][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.275][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.280][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.284][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:49.286][self$createEntryFromContent] Accession numbers: 71954. biodb.TRACE[2025-08-09 16:03:49.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.290][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.295][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:49.301][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:49.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:49.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:49.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:49.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:49.312][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:49.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:49.315][private$loadEntries] Creating entries from ids [1]: "197612". biodb.DEBUG[2025-08-09 16:03:49.316][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:49.318][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:49.336][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml. biodb.DEBUG[2025-08-09 16:03:49.337][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:49.339][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:49.340][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:49.342][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:49.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:49.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:49.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:49.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:49.353][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:49.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:49.357][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.358][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.360][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.361][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.366][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.367][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:49.368][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:49.369][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.371][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.372][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:49.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:49.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.376][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.377][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:49.378][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:49.379][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.381][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.382][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:49.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:49.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.386][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.387][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:49.388][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:49.390][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.391][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:49.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:49.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.396][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.397][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:49.398][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:49.400][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.401][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:49.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:49.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.406][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.407][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:49.408][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:49.409][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.411][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.412][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:49.418][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.419][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.420][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.421][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:49.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.425][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.426][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.428][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.429][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.430][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.435][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.436][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:49.438][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:49.439][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.440][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:49.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:49.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.445][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.446][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:49.448][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:49.449][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.450][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.451][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:49.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:49.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.455][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.456][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:49.457][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:49.459][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.460][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:49.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:49.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.465][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.470][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.474][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.479][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.484][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.489][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.494][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.498][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.503][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.508][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:49.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:49.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:49.514][self$createEntryFromContent] Accession numbers: 197612. biodb.TRACE[2025-08-09 16:03:49.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.524][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:49.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.529][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:49.530][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:49.532][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:49.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:49.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:49.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:49.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:49.543][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:49.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:49.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.549][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.554][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.555][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:49.556][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:49.558][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:49.559][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:49.560][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:49.561][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.562][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.564][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.565][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.566][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.567][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.569][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.570][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.571][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:49.572][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:49.573][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.575][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.576][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.577][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.578][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:49.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.583][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.588][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.593][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799]. biodb.DEBUG[2025-08-09 16:03:49.596][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:49.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:49.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:49.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:49.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:49.607][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:49.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:49.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.622][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.624][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:49.625][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:49.626][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:49.627][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:49.628][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:49.629][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.631][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.632][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.633][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.634][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.636][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.637][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.638][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.639][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:49.640][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:49.641][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.643][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.644][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.645][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.646][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:49.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.651][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.656][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.660][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.662][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954]. biodb.DEBUG[2025-08-09 16:03:49.663][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:49.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:49.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:49.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:49.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:49.675][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:49.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:49.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.681][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.686][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.687][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:49.688][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:49.689][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:49.690][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:49.691][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:49.693][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.694][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.695][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.696][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.697][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.699][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.700][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.701][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.702][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:49.703][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:49.705][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.706][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.707][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.708][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.709][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:49.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.715][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.721][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.726][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.728][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612]. biodb.DEBUG[2025-08-09 16:03:49.729][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:49.730][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.TRACE[2025-08-09 16:03:49.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.745][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.749][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.754][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.759][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.764][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.769][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.774][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.779][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.784][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.789][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.793][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.798][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:49.848][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:49.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:49.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:49.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:49.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:49.859][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:49.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:49.864][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:49.866][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:49.870][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/2e865a03592d6effdf242ff63104f35a.content. sched.DEBUG[2025-08-09 16:03:49.871][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. sched.DEBUG[2025-08-09 16:03:49.874][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:49.877][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:49.881][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/f0c73645ca32490f91d503a462d812b2.content. sched.DEBUG[2025-08-09 16:03:49.882][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:49.885][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:49.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:49.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:49.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:49.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:49.896][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:49.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:49.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.907][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.912][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:49.913][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:49.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:49.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:49.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:49.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:49.924][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:49.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:49.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.931][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.936][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.940][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:49.942][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:49.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:49.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:49.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:49.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:49.954][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:49.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:49.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.961][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.966][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:49.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.970][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:49.972][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:49.974][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:49.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:49.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:49.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:49.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:49.990][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:49.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:49.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:49.996][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:49.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:49.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.001][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.002][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.003][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:50.004][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:50.005][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:50.006][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.007][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.009][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.010][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.011][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.012][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.014][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.015][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.016][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.017][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.018][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.019][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.021][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.022][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.023][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.024][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:50.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.029][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.034][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.038][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.040][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648]. biodb.DEBUG[2025-08-09 16:03:50.041][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:50.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:50.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:50.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:50.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:50.052][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:50.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.069][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.073][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.092][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.093][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:50.094][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:50.096][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:50.097][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.098][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.099][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.101][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.102][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.103][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.104][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.105][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.107][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.108][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.117][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.119][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.120][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.121][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.122][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.124][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:50.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.128][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.133][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.138][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440]. biodb.DEBUG[2025-08-09 16:03:50.146][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:50.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:50.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:50.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:50.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:50.158][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:50.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:50.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.164][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.169][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.170][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.171][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:50.172][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:50.174][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:50.175][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.176][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.177][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.179][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.180][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.181][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.182][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.183][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.184][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.186][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.187][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.188][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.189][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.190][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.192][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.193][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:50.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.198][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.202][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.207][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.209][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447]. biodb.DEBUG[2025-08-09 16:03:50.210][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:50.211][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:03:50.213][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:50.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:50.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:50.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:50.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:50.225][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:50.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:50.229][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:50.232][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:50.261][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content. sched.DEBUG[2025-08-09 16:03:50.263][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:50.266][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:50.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:50.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:50.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:50.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:50.277][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:50.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:50.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.283][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.288][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.293][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:50.294][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:50.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:50.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:50.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:50.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:50.305][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:50.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:50.307][private$loadEntries] Creating entries from ids [1]: "91601". biodb.DEBUG[2025-08-09 16:03:50.309][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:50.310][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:50.329][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml. biodb.DEBUG[2025-08-09 16:03:50.331][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:50.332][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:50.334][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:50.336][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:50.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:50.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:50.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:50.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:50.347][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:50.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:50.351][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.352][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.353][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.354][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.359][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.361][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:50.362][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:50.363][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.364][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.366][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:50.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:50.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.369][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.370][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:50.372][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:50.373][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.374][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:50.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:50.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.379][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.381][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:50.382][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:50.383][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.384][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:50.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:50.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.395][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:50.397][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:50.398][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.399][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:50.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:50.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.404][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.405][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:50.407][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:50.408][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.409][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.410][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:50.412][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:50.413][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.414][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.415][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:50.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:50.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.419][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.420][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.421][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.422][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.423][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.428][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.430][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:50.431][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:50.432][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.433][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:50.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:50.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.438][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.440][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:50.441][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:50.442][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.443][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.445][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:50.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:50.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.448][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.450][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:50.452][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:50.453][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.454][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:50.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:50.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.459][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.464][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.469][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.473][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.478][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.483][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.488][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.492][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.497][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.502][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.507][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:50.508][self$createEntryFromContent] Accession numbers: 91601. biodb.TRACE[2025-08-09 16:03:50.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.517][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.522][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:50.523][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:50.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:50.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:50.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:50.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:50.534][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:50.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:50.537][private$loadEntries] Creating entries from ids [1]: "95147". biodb.DEBUG[2025-08-09 16:03:50.539][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:50.541][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:50.559][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml. biodb.DEBUG[2025-08-09 16:03:50.561][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:50.563][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:50.564][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:50.566][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:50.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:50.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:50.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:50.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:50.579][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:50.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:50.583][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.584][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.586][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.587][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.592][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.594][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:50.595][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:50.596][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.597][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.599][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:50.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:50.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.602][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.604][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:50.605][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:50.613][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.614][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:50.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:50.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.620][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.621][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:50.623][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:50.624][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.625][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:50.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.631][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.633][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:50.634][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:50.635][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.636][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:50.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:50.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.642][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.643][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:50.644][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:50.646][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.647][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.648][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:50.649][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:50.651][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.652][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.653][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:50.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:50.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.659][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.660][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.661][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.662][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.667][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.669][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:50.670][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:50.671][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.672][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:50.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.679][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:50.680][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:50.682][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.683][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.686][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:50.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:50.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.690][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.692][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:50.693][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:50.694][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.696][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:50.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:50.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.701][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.706][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.711][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.715][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.720][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.725][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.730][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.734][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.739][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.744][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:50.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:50.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.749][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:50.750][self$createEntryFromContent] Accession numbers: 95147. biodb.TRACE[2025-08-09 16:03:50.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.755][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.760][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:50.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.765][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:50.766][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:50.768][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:50.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:50.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:50.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:50.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:50.779][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:50.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:50.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.786][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.790][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.792][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.793][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:50.794][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:50.795][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:50.796][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.797][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.799][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.800][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.801][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.802][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.803][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.805][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.806][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.807][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.808][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.814][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.815][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.816][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.818][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.819][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:50.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.824][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.828][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.833][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.835][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:03:50.836][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:50.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:50.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:50.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:50.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:50.847][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:50.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:50.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.854][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.859][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.860][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.861][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:50.862][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:50.864][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:50.865][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.866][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.867][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.868][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.870][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.871][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.872][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.873][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.874][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.876][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.877][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.878][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.879][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.881][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.882][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.883][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:50.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.888][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.893][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.898][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.900][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601]. biodb.DEBUG[2025-08-09 16:03:50.901][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:50.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:50.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:50.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:50.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:50.912][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:50.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:50.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.919][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.924][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.925][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.926][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:50.927][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:50.928][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:50.930][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.931][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.932][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.933][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.935][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.936][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.937][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.938][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.939][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.941][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.942][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:50.943][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.944][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.946][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.947][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.948][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:50.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.953][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.958][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:50.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:50.963][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:50.964][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147]. biodb.DEBUG[2025-08-09 16:03:50.966][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:50.967][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:03:50.969][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:50.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:50.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:50.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:50.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:50.980][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:50.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:50.985][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:50.987][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:51.004][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content. sched.DEBUG[2025-08-09 16:03:51.005][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:51.008][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:51.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:51.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:51.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:51.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:51.020][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:51.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:51.023][private$loadEntries] Creating entries from ids [1]: "636". biodb.DEBUG[2025-08-09 16:03:51.024][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:51.030][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:51.047][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml. biodb.DEBUG[2025-08-09 16:03:51.049][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:51.050][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:51.052][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:51.054][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:51.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:51.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:51.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:51.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:51.065][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:51.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:51.069][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.070][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.071][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.072][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.077][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.079][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:51.080][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:51.081][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.082][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.084][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:51.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:51.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.087][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.089][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:51.090][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:51.091][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.092][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:51.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:51.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.097][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.099][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:51.100][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:51.101][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.102][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:51.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:51.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.107][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.109][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:51.110][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:51.111][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.112][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:51.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:51.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.117][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.119][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:51.120][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:51.121][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.122][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.124][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:51.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:51.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.129][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:51.130][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.131][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.132][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.134][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:51.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.138][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.139][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.140][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.141][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.142][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.148][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.149][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:51.150][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:51.151][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.152][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:51.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:51.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.158][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.159][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:51.160][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:51.162][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.163][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.164][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:51.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.168][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.169][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:51.170][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:51.172][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.173][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:51.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:51.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.178][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.183][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.188][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.193][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.207][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.212][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.217][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.222][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.227][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:51.228][self$createEntryFromContent] Accession numbers: 636. biodb.TRACE[2025-08-09 16:03:51.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.233][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.243][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.248][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:51.249][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:51.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:51.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:51.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:51.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:51.260][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:51.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:51.263][private$loadEntries] Creating entries from ids [1]: "64199". biodb.DEBUG[2025-08-09 16:03:51.264][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:51.266][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:51.284][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml. biodb.DEBUG[2025-08-09 16:03:51.285][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:51.287][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:51.288][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:51.290][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:51.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:51.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:51.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:51.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:51.301][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:51.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:51.305][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.307][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.308][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.309][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.316][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:51.317][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:51.318][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.319][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.321][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:51.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:51.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.324][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.326][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:51.327][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:51.328][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.329][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.331][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:51.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:51.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.334][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.335][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:51.337][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:51.338][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.339][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:51.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.344][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.346][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:51.347][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:51.348][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.349][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:51.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:51.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.354][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.355][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:51.357][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:51.358][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.359][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.361][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:51.362][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.363][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.364][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.366][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:51.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.369][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.370][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.372][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.373][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.374][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.379][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.380][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:51.382][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:51.383][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.384][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:51.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:51.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.389][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.390][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:51.392][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:51.393][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.394][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:51.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:51.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.399][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.400][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:51.402][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:51.403][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.404][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:51.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:51.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.409][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.414][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.427][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.432][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.437][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.442][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.447][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.452][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.466][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:51.467][self$createEntryFromContent] Accession numbers: 64199. biodb.TRACE[2025-08-09 16:03:51.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.472][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.477][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.481][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:51.483][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:51.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:51.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:51.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:51.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:51.493][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:51.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:51.496][private$loadEntries] Creating entries from ids [1]: "65648". biodb.DEBUG[2025-08-09 16:03:51.497][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:51.499][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:51.529][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml. biodb.DEBUG[2025-08-09 16:03:51.530][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:51.532][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:51.533][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:51.535][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:51.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:51.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:51.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:51.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:51.546][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:51.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:51.550][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.551][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.552][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.554][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.558][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.560][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:51.561][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:51.562][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.563][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.565][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:51.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:51.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.568][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.570][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:51.571][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:51.572][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.573][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:51.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:51.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.578][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.579][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:51.581][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:51.582][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.583][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:51.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:51.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.588][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.589][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:51.590][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:51.592][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.593][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:51.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:51.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.598][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.599][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:51.600][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:51.601][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.602][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.604][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:51.605][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.606][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.607][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.609][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:51.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.612][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.614][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.615][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.616][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.617][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.622][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.624][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:51.625][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:51.626][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.627][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:51.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:51.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.632][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.634][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:51.635][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:51.636][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.637][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.639][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:51.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:51.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.642][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.644][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:51.645][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:51.646][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.647][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.649][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:51.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:51.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.652][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.657][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.662][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.671][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.681][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.686][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.691][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.695][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.700][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:51.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:51.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.705][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:51.706][self$createEntryFromContent] Accession numbers: 65648. biodb.TRACE[2025-08-09 16:03:51.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.711][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.717][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:51.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.722][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:51.723][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:51.725][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:51.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:51.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:51.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:51.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:51.736][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:51.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:51.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.743][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.748][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.749][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:51.750][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:51.751][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:51.752][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:51.753][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:51.755][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.756][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.757][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.758][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.759][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.761][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.762][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.763][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.764][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:51.765][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:51.766][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.768][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.769][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.770][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.771][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:51.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.781][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.785][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.787][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636]. biodb.DEBUG[2025-08-09 16:03:51.788][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:51.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:51.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:51.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:51.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:51.799][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:51.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:51.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.805][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.810][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.811][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:51.812][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:51.813][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:51.815][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:51.816][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:51.817][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.818][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.819][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.820][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.822][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.823][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.824][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.825][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.826][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:51.828][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:51.829][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.830][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.831][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.832][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.833][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:51.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.838][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.843][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.848][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.849][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199]. biodb.DEBUG[2025-08-09 16:03:51.851][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:51.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:51.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:51.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:51.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:51.862][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:51.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:51.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.878][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.879][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:51.880][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:51.882][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:51.883][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:51.884][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:51.885][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.886][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.887][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.889][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.890][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.891][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.892][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.893][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.894][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:51.896][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:51.897][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.898][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.899][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.900][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.901][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:51.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.906][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.911][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:51.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.916][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.917][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648]. biodb.DEBUG[2025-08-09 16:03:51.918][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:51.919][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.TRACE[2025-08-09 16:03:51.930][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:03:51.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:03:51.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.934][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.935][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:03:51.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:03:51.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.938][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.940][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:03:51.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:03:51.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.943][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.INFO [2025-08-09 16:03:51.950][biodb::testThat] biodb.INFO [2025-08-09 16:03:51.951][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() "). biodb.INFO [2025-08-09 16:03:51.952][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:03:51.953][biodb::testThat] biodb.TRACE[2025-08-09 16:03:51.957][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:03:51.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:03:51.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.961][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.962][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:03:51.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:03:51.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.965][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.967][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:03:51.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:03:51.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.975][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.980][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.985][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.990][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.994][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:51.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:51.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:51.999][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.009][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.014][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.019][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.023][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.028][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:52.032][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.043][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:52.048][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:52.051][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:52.053][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content. sched.DEBUG[2025-08-09 16:03:52.054][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:52.057][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.068][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.082][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.087][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.092][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:52.094][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:52.097][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:52.099][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content. sched.DEBUG[2025-08-09 16:03:52.100][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:52.103][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.114][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.125][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.129][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:52.131][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.142][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.148][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.157][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:52.159][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:52.160][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.171][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.178][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.182][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.183][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.185][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:52.186][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:52.187][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:52.188][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.189][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.191][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.192][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.193][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.194][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.195][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.197][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.198][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.199][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.200][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.201][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.202][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.204][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.205][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.206][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.211][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.215][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.220][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288]. biodb.DEBUG[2025-08-09 16:03:52.223][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.234][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.240][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.245][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.246][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.247][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:52.248][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:52.250][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:52.251][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.252][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.253][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.254][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.255][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.257][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.258][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.259][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.260][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.261][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.263][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.264][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.265][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.266][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.267][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.268][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:52.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.278][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.283][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.288][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.289][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440]. biodb.DEBUG[2025-08-09 16:03:52.291][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.302][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.308][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.313][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.314][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.315][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:52.316][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:52.318][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:52.319][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.320][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.321][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.322][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.323][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.325][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.326][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.327][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.328][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.329][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.330][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.332][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.333][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.334][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.335][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.336][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:52.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.341][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.351][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.352][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892]. biodb.DEBUG[2025-08-09 16:03:52.353][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:52.354][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:03:52.357][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.368][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:52.372][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:52.375][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:52.377][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content. sched.DEBUG[2025-08-09 16:03:52.378][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:52.381][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.392][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.398][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.407][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:52.408][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.419][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.425][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.430][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.435][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:52.437][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:52.440][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:52.443][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content. sched.DEBUG[2025-08-09 16:03:52.444][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:52.447][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.458][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.464][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.469][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.478][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:52.480][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.491][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.497][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.502][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.507][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:52.508][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.520][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.526][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.531][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.535][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:52.537][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:52.538][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.550][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.556][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.561][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.562][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.563][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:52.564][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:52.565][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:52.566][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.567][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.569][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.570][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.571][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.572][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.573][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.574][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.576][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.577][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.578][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.579][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.580][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.581][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.583][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.584][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:52.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.588][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.593][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.598][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:03:52.601][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.612][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.618][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.623][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.624][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.625][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:52.626][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:52.627][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:52.628][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.630][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.631][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.632][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.633][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.634][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.636][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.637][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.638][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.639][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.640][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.642][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.643][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.644][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.645][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.646][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.656][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.661][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.662][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587]. biodb.DEBUG[2025-08-09 16:03:52.664][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.680][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.687][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.691][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.693][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.694][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:52.695][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:52.696][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:52.697][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.698][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.700][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.701][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.702][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.703][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.704][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.706][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.707][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.708][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.709][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:52.710][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.712][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.713][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.715][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.716][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:52.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.721][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.726][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:52.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.731][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804]. biodb.DEBUG[2025-08-09 16:03:52.734][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:52.735][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:03:52.737][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.748][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:52.752][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:52.755][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:52.758][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content. sched.DEBUG[2025-08-09 16:03:52.759][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:52.761][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.773][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.779][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.783][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.788][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:52.789][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.801][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.807][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.811][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.816][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:52.819][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.830][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.836][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.841][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.846][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:52.848][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:52.851][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:52.880][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/9e2d7a19ee9cad83d9ec98e38ff7728c.content. sched.DEBUG[2025-08-09 16:03:52.882][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:52.887][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.899][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.910][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.915][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.920][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:52.921][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.932][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:52.935][private$loadEntries] Creating entries from ids [1]: "3017". biodb.DEBUG[2025-08-09 16:03:52.936][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:52.937][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:52.955][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml. biodb.DEBUG[2025-08-09 16:03:52.957][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:52.958][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:52.960][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:52.962][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:52.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:52.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:52.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:52.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:52.972][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:52.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:52.976][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:52.977][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:52.979][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.980][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:52.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:52.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.985][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.986][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:52.987][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:52.988][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.989][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.991][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:52.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:52.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.994][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:52.996][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:52.997][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:52.998][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:52.999][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:53.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:53.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.005][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:53.007][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:53.008][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.009][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:53.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:53.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.014][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.015][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:53.016][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:53.018][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.019][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:53.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:53.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.024][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.025][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:53.026][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:53.027][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.028][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.030][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:53.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:53.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.033][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.035][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:53.036][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.037][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.038][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.040][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:53.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.043][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.044][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.046][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.047][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.048][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.053][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.054][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:53.055][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:53.056][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.058][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:53.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:53.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.063][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.065][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:53.066][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:53.067][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.068][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.070][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:53.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:53.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.073][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.075][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:53.076][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:53.077][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.078][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:53.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:53.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.083][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.088][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.093][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.098][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.103][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.108][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.112][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.122][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.132][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.137][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:53.138][self$createEntryFromContent] Accession numbers: 3017. biodb.TRACE[2025-08-09 16:03:53.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.143][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.148][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.153][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:53.154][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:53.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:53.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:53.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:53.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:53.165][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:53.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:53.167][private$loadEntries] Creating entries from ids [1]: "3510". biodb.DEBUG[2025-08-09 16:03:53.168][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:53.170][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:53.190][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml. biodb.DEBUG[2025-08-09 16:03:53.191][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:53.193][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:53.194][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:53.196][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:53.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:53.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:53.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:53.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:53.207][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:53.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:53.210][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.212][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.213][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.214][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.219][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.220][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:53.221][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:53.223][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.224][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.225][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:53.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:53.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.229][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.230][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:53.231][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:53.232][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.233][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:53.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.238][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.240][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:53.241][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:53.242][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.243][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:53.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:53.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.248][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.249][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:53.251][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:53.252][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.253][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:53.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:53.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.258][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.259][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:53.260][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:53.262][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.263][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.264][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:53.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:53.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.268][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.269][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:53.270][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.271][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.272][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:53.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.277][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.279][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.280][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.281][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.282][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.287][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.288][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:53.290][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:53.291][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.292][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:53.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:53.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.297][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.299][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:53.300][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:53.301][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.302][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.303][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:53.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:53.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.307][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.308][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:53.310][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:53.311][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.312][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:53.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:53.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.317][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.322][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.332][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.337][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.342][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.347][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.351][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.356][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.361][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.366][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.370][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:53.371][self$createEntryFromContent] Accession numbers: 3510. biodb.TRACE[2025-08-09 16:03:53.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.376][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.381][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.386][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:53.387][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:53.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:53.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:53.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:53.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:53.398][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:53.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:53.401][private$loadEntries] Creating entries from ids [1]: "7554". biodb.DEBUG[2025-08-09 16:03:53.402][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:53.403][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:53.420][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml. biodb.DEBUG[2025-08-09 16:03:53.421][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:53.423][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:53.424][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:53.426][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:53.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:53.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:53.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:53.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:53.437][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:53.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:53.441][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.442][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.443][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.444][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.449][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.450][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:53.452][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:53.453][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.454][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.455][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:53.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:53.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.459][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.460][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:53.462][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:53.463][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.464][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:53.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:53.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.469][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.470][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:53.471][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:53.473][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.474][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:53.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:53.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.479][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.480][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:53.481][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:53.483][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.484][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:53.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.490][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:53.491][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:53.493][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.494][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.495][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:53.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:53.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.499][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.500][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:53.501][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.502][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.504][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.505][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:53.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.509][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.510][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.511][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.512][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.514][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.519][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.520][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:53.521][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:53.522][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.524][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:53.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:53.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.529][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.530][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:53.531][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:53.533][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.534][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.535][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:53.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:53.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.544][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.545][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:53.547][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:53.548][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.549][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:53.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:53.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.555][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.561][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.566][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.570][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.575][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.580][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.585][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.590][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.595][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.599][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:53.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:53.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.604][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:53.605][self$createEntryFromContent] Accession numbers: 7554. biodb.TRACE[2025-08-09 16:03:53.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.610][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.615][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:53.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:53.621][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:53.623][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:53.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:53.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:53.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:53.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:53.634][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:53.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:53.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.640][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.645][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.646][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:53.648][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:53.649][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:53.650][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:53.651][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:53.652][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.653][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.655][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.656][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.657][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.658][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.659][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.660][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.662][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:53.663][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:53.664][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.665][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.666][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.668][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.669][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:53.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.678][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.683][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799]. biodb.DEBUG[2025-08-09 16:03:53.686][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:53.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:53.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:53.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:53.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:53.697][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:53.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:53.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.704][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.710][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:53.711][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:53.712][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:53.713][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:53.715][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:53.717][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.719][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.720][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.722][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.723][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.725][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.726][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.727][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.728][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:53.729][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:53.731][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.732][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.733][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.734][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.740][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:53.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.746][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.750][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.755][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.757][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017]. biodb.DEBUG[2025-08-09 16:03:53.758][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:53.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:53.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:53.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:53.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:53.769][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:53.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:53.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.776][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.780][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.782][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:53.783][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:53.784][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:53.785][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:53.786][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:53.787][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.789][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.790][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.791][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.792][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.793][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.795][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.796][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.797][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:53.798][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:53.799][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.800][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.802][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.803][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.804][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:53.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.814][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:53.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.819][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554]. biodb.DEBUG[2025-08-09 16:03:53.821][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:53.823][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.TRACE[2025-08-09 16:03:53.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.837][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.842][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.846][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.851][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.856][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.861][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.866][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.871][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.875][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.880][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.885][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.890][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:53.894][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:53.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:53.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:53.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:53.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:53.905][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:53.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:53.909][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:53.912][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:53.914][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/2e865a03592d6effdf242ff63104f35a.content. sched.DEBUG[2025-08-09 16:03:53.916][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. sched.DEBUG[2025-08-09 16:03:53.919][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:53.922][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:53.924][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/f0c73645ca32490f91d503a462d812b2.content. sched.DEBUG[2025-08-09 16:03:53.926][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:53.929][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:53.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:53.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:53.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:53.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:53.946][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:53.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.952][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:53.963][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:53.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:53.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:53.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:53.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:53.974][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:53.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:53.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.980][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.985][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:53.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:53.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:53.990][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:53.992][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:53.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:53.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.003][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:54.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.009][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.014][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.018][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:54.020][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:54.022][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.033][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:54.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.039][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.044][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.045][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.046][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:54.047][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:54.049][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:54.050][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.051][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.052][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.053][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.055][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.056][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.057][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.058][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.059][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.061][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.062][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.063][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.064][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.065][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.066][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.068][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:54.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.073][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.077][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.082][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.084][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648]. biodb.DEBUG[2025-08-09 16:03:54.085][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.096][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:54.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.103][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.108][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.109][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.110][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:54.111][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:54.112][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:54.114][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.115][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.116][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.117][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.118][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.120][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.121][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.122][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.123][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.124][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.126][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.127][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.128][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.129][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.130][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.132][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:54.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.142][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.147][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.152][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.153][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440]. biodb.DEBUG[2025-08-09 16:03:54.154][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.166][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:54.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.177][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.178][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.179][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:54.180][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:54.181][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:54.182][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.184][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.185][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.186][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.187][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.188][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.190][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.191][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.192][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.193][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.194][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.195][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.197][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.198][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.199][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.200][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:54.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.205][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.210][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.215][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447]. biodb.DEBUG[2025-08-09 16:03:54.217][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:54.219][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:03:54.221][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.232][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:54.236][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:54.239][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:54.255][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/ca8f292aaf9d7e19110a4d4f8e8081db.content. sched.DEBUG[2025-08-09 16:03:54.256][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:54.260][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.271][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:54.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.277][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.282][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.286][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:54.288][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.300][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:54.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.307][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.311][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.316][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:54.318][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.329][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:54.331][private$loadEntries] Creating entries from ids [1]: "27495". biodb.DEBUG[2025-08-09 16:03:54.332][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:54.334][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:54.351][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml. biodb.DEBUG[2025-08-09 16:03:54.352][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:54.354][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:54.355][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:54.357][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.374][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:54.378][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:54.379][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:54.380][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.382][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:54.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.387][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.388][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:54.389][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:54.390][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.392][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.393][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:54.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.397][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.398][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:54.399][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:54.400][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.402][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:54.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:54.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.407][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.408][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:54.409][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:54.411][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.412][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:54.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:54.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.417][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.418][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:54.420][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:54.421][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.422][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:54.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:54.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.427][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.428][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:54.430][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:54.431][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.432][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.433][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:54.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:54.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.437][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.438][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:54.440][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:54.441][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.442][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.443][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:54.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:54.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.447][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.448][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.450][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.451][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.452][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.457][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.458][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:54.460][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:54.461][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.462][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:54.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:54.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.467][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.468][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:54.470][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:54.471][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.472][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.473][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:54.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:54.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.477][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.478][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:54.480][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:54.481][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.482][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:54.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:54.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.487][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.497][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:54.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:54.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.501][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.506][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:54.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:54.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.511][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:54.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:54.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.516][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:54.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:54.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.521][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:54.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:54.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.526][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:54.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:54.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.531][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:54.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:54.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.536][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:54.537][self$createEntryFromContent] Accession numbers: 27495. biodb.TRACE[2025-08-09 16:03:54.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.542][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.547][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.552][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:54.553][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:54.555][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.572][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:54.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.578][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.583][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.584][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.585][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:54.586][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:54.587][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:54.588][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.590][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.591][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.592][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.593][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.594][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.595][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.597][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.598][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.599][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.600][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.601][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.603][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.604][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.605][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.606][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:54.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.611][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.616][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.620][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.622][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587]. biodb.DEBUG[2025-08-09 16:03:54.623][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.635][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:54.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.641][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.646][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.647][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.648][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:54.649][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:54.650][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:54.651][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.653][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.654][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.655][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.656][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.657][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.659][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.660][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.661][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.662][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.663][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.665][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.666][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.667][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.668][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.669][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:54.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.674][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.679][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.684][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804]. biodb.DEBUG[2025-08-09 16:03:54.687][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.698][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:54.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.710][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.711][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:54.713][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:54.715][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:54.717][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.718][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.719][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.720][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.721][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.723][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.724][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.725][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.726][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.727][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.729][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:54.730][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.731][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.732][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.733][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.735][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.740][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.744][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:54.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.749][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.751][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495]. biodb.DEBUG[2025-08-09 16:03:54.752][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:54.753][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:03:54.755][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.772][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:54.776][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:54.779][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:54.782][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content. sched.DEBUG[2025-08-09 16:03:54.784][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:54.787][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.798][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:54.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.814][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:54.815][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.826][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:54.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.832][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.837][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.842][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:54.843][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.855][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:54.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.861][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.865][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:54.872][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.882][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:54.885][private$loadEntries] Creating entries from ids [1]: "65675". biodb.DEBUG[2025-08-09 16:03:54.886][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:54.888][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:54.903][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml. biodb.DEBUG[2025-08-09 16:03:54.905][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:54.906][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:54.908][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:54.910][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:54.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:54.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:54.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:54.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:54.921][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:54.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:54.925][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:54.926][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:54.927][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.928][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:54.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.933][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.935][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:54.936][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:54.937][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.938][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.940][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:54.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:54.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.943][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.945][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:54.946][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:54.947][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.948][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:54.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:54.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.953][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.955][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:54.956][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:54.957][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.958][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:54.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:54.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.963][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.965][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:54.966][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:54.967][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.968][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:54.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:54.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.980][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:54.982][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:54.983][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.984][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.986][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:54.987][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:54.988][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.989][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.991][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:54.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:54.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.994][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:54.996][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.997][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:54.998][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:54.999][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.006][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:55.007][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:55.008][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.009][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:55.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:55.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.014][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.016][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:55.017][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:55.018][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.019][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.021][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:55.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:55.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.024][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.026][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:55.027][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:55.028][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.029][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:55.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:55.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.034][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.039][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.044][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.049][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.054][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.058][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.063][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.068][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.078][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.083][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:55.084][self$createEntryFromContent] Accession numbers: 65675. biodb.TRACE[2025-08-09 16:03:55.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.089][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.094][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.098][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:55.100][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:55.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:55.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:55.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:55.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:55.111][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:55.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:55.113][private$loadEntries] Creating entries from ids [1]: "66318". biodb.DEBUG[2025-08-09 16:03:55.115][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:55.116][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:55.134][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml. biodb.DEBUG[2025-08-09 16:03:55.136][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:55.137][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:55.139][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:55.141][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:55.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:55.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:55.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:55.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:55.152][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:55.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:55.156][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.158][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.159][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.160][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.165][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.166][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:55.168][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:55.169][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.170][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.171][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:55.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:55.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.175][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.177][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:55.178][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:55.179][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.180][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:55.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:55.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.186][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.192][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:55.194][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:55.195][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.196][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:55.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:55.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.201][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.203][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:55.204][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:55.205][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.206][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:55.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:55.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.211][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.213][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:55.214][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:55.215][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.216][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.218][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:55.219][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:55.220][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.221][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:55.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:55.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.226][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.227][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.229][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.230][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.231][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.236][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.237][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:55.239][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:55.240][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.241][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:55.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:55.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.246][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.248][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:55.249][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:55.250][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.251][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.253][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:55.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:55.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.256][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.257][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:55.259][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:55.260][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.261][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:55.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:55.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.266][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.271][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.281][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.286][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.291][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.295][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.300][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.305][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.310][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.315][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:55.316][self$createEntryFromContent] Accession numbers: 66318. biodb.TRACE[2025-08-09 16:03:55.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.321][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.326][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.331][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:55.332][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:55.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:55.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:55.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:55.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:55.343][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:55.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:55.346][private$loadEntries] Creating entries from ids [1]: "67547". biodb.DEBUG[2025-08-09 16:03:55.347][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:55.349][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:55.365][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml. biodb.DEBUG[2025-08-09 16:03:55.367][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:55.368][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:55.370][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:55.372][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:55.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:55.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:55.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:55.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:55.383][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:55.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:55.387][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.388][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.389][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.391][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.396][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.402][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:55.404][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:55.405][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.406][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.408][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:55.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:55.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.412][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.413][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:55.414][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:55.415][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.416][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:55.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:55.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.422][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.423][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:55.424][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:55.425][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.426][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:55.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:55.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.432][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.433][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:55.434][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:55.435][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.436][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:55.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:55.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.442][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.443][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:55.444][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:55.445][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.447][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.448][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:55.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:55.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.452][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.453][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:55.454][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:55.455][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.457][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.458][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:55.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:55.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.462][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.463][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.464][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.466][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.467][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.472][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.473][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:55.474][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:55.476][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.477][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:55.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:55.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.482][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.483][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:55.485][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:55.486][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.487][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:55.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:55.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.492][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.493][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:55.495][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:55.496][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.497][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:55.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:55.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.502][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.507][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.512][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.517][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.522][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.527][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.531][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.536][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.541][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.546][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.551][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:55.552][self$createEntryFromContent] Accession numbers: 67547. biodb.TRACE[2025-08-09 16:03:55.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.557][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.562][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.567][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:55.568][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:55.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:55.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:55.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:55.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:55.580][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:55.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:55.582][private$loadEntries] Creating entries from ids [1]: "69550". biodb.DEBUG[2025-08-09 16:03:55.583][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:55.585][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:55.602][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml. biodb.DEBUG[2025-08-09 16:03:55.603][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:55.605][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:55.611][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:55.613][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:55.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:55.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:55.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:55.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:55.624][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:55.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:55.628][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.629][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.631][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.632][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.637][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.638][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:55.639][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:55.640][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.642][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.643][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:55.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:55.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.647][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.648][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:55.649][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:55.650][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.652][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:55.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:55.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.657][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.658][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:55.659][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:55.660][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.661][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:55.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:55.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.667][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.669][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:55.671][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:55.672][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.673][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:55.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:55.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.678][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.679][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:55.681][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:55.682][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.683][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.684][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:55.686][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:55.687][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.688][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.689][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:55.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:55.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.693][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.694][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.696][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.697][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.698][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.703][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.704][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:55.706][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:55.707][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.708][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:55.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:55.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.713][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.715][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:55.717][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:55.719][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.720][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.722][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:55.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:55.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.727][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.729][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:55.731][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:55.733][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.734][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:55.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:55.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.742][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.748][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.753][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.758][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.763][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.768][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.773][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.778][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.783][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.788][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.793][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:55.794][self$createEntryFromContent] Accession numbers: 69550. biodb.TRACE[2025-08-09 16:03:55.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.799][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:55.810][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:55.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:55.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:55.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:55.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:55.827][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:55.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:55.829][private$loadEntries] Creating entries from ids [1]: "71520". biodb.DEBUG[2025-08-09 16:03:55.831][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:55.832][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:55.870][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml. biodb.DEBUG[2025-08-09 16:03:55.871][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:55.873][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:55.875][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:55.877][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:55.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:55.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:55.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:55.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:55.888][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:55.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:55.892][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.893][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.895][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.896][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:55.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:55.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.901][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.902][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:55.903][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:55.904][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.906][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.907][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:55.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:55.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.911][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.912][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:55.913][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:55.914][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.915][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:55.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:55.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.920][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.922][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:55.923][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:55.924][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.925][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:55.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:55.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.930][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.932][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:55.933][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:55.934][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.935][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:55.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:55.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.940][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.942][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:55.943][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:55.944][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.945][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.947][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:55.948][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:55.949][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.950][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.952][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:55.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:55.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.955][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.956][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.958][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.959][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.960][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:55.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.965][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.966][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:55.968][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:55.969][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.970][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:55.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:55.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.975][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.976][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:55.978][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:55.979][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.980][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.981][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:55.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:55.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.985][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.986][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:55.987][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:55.989][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.990][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:55.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:55.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:55.995][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:55.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:55.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.000][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.015][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.020][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.025][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.029][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.034][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.039][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.050][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:56.051][self$createEntryFromContent] Accession numbers: 71520. biodb.TRACE[2025-08-09 16:03:56.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.056][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.061][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.066][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:56.067][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:56.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:56.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:56.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:56.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:56.078][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:56.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:56.081][private$loadEntries] Creating entries from ids [1]: "77600". biodb.DEBUG[2025-08-09 16:03:56.082][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:56.084][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:56.100][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml. biodb.DEBUG[2025-08-09 16:03:56.101][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:56.103][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:56.104][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:56.106][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:56.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:56.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:56.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:56.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:56.117][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:56.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:56.121][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.122][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.123][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.124][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.129][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.131][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:56.132][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:56.133][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.134][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:56.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:56.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.139][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.141][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:56.142][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:56.143][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.144][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:56.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:56.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.149][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.150][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:56.152][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:56.153][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.154][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:56.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:56.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.159][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.160][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:56.161][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:56.163][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.164][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:56.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:56.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.169][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.170][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:56.171][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:56.172][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.174][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.175][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:56.176][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.177][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.178][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.180][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:56.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.183][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.185][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.186][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.187][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.188][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.193][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.195][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:56.196][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:56.197][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.198][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:56.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:56.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.203][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.205][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:56.206][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:56.207][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.208][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.210][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:56.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:56.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.213][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.215][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:56.216][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:56.217][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.218][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:56.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:56.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.223][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.228][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.233][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.238][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.242][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.247][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.258][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.262][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.267][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.272][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.277][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:56.278][self$createEntryFromContent] Accession numbers: 77600. biodb.TRACE[2025-08-09 16:03:56.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.283][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.288][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.292][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:56.294][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:56.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:56.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:56.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:56.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:56.305][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:56.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:56.307][private$loadEntries] Creating entries from ids [1]: "77601". biodb.DEBUG[2025-08-09 16:03:56.308][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:56.310][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:56.325][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml. biodb.DEBUG[2025-08-09 16:03:56.327][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:56.328][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:56.330][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:56.331][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:56.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:56.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:56.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:56.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:56.343][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:56.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:56.347][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.348][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.349][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.350][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.355][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.356][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:56.358][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:56.359][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.360][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.361][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:56.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:56.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.365][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.366][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:56.368][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:56.369][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.370][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:56.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:56.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.375][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.376][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:56.377][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:56.379][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.380][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:56.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:56.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.386][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:56.387][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:56.388][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.390][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:56.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:56.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.395][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.396][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:56.397][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:56.398][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.399][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.401][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:56.402][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.403][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.404][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.406][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:56.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.410][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.411][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.412][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.413][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.414][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.420][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.421][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:56.422][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:56.423][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.424][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:56.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:56.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.430][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.431][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:56.432][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:56.433][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.435][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.436][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:56.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:56.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.440][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.441][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:56.442][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:56.443][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.445][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:56.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:56.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.450][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.464][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.470][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.475][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.479][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.484][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.489][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.494][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.499][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.503][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:56.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:56.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.508][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:56.509][self$createEntryFromContent] Accession numbers: 77601. biodb.TRACE[2025-08-09 16:03:56.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.514][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.519][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:56.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.524][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:56.525][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:56.527][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:56.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:56.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:56.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:56.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:56.538][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:56.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:56.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.544][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.549][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.550][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:56.552][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:56.553][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:56.554][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:56.555][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:56.556][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.557][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.559][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.560][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.561][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.562][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.563][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.564][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.566][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:56.567][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:56.568][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.569][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.570][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.571][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.573][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:56.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.577][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.582][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.587][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.588][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199]. biodb.DEBUG[2025-08-09 16:03:56.590][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:56.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:56.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:56.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:56.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:56.601][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:56.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:56.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.607][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.612][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.613][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:56.614][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:56.615][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:56.616][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:56.618][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:56.619][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.620][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.621][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.622][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.624][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.625][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.626][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.627][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.628][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:56.630][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:56.631][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.632][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.633][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.634][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.636][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:56.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.641][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.645][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.650][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.652][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600]. biodb.DEBUG[2025-08-09 16:03:56.658][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:56.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:56.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:56.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:56.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:56.670][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:56.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:56.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.676][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.681][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.682][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:56.683][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:56.684][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:56.685][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:56.687][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:56.688][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.689][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.690][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.691][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.693][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.694][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.695][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.696][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.697][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:56.698][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:56.700][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.701][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.702][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.703][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.704][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:56.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.714][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.720][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.723][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601]. biodb.DEBUG[2025-08-09 16:03:56.724][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:56.726][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.TRACE[2025-08-09 16:03:56.736][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:03:56.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:03:56.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.740][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.741][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:03:56.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:03:56.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.745][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.746][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:03:56.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:03:56.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.750][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.INFO [2025-08-09 16:03:56.756][biodb::testThat] biodb.INFO [2025-08-09 16:03:56.757][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() "). biodb.INFO [2025-08-09 16:03:56.759][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:03:56.760][biodb::testThat] biodb.TRACE[2025-08-09 16:03:56.764][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:03:56.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:03:56.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.767][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.769][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:03:56.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:03:56.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.772][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.773][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:03:56.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:03:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.777][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.782][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.787][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.792][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.796][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.801][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.806][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.811][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.816][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.821][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.826][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.831][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.836][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:56.841][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:56.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:56.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:56.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:56.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:56.852][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:56.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:56.861][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:56.865][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:56.867][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content. sched.DEBUG[2025-08-09 16:03:56.868][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:56.871][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:56.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:56.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:56.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:56.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:56.882][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:56.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:56.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.888][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.892][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.897][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:56.899][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:56.902][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:56.904][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content. sched.DEBUG[2025-08-09 16:03:56.906][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:56.908][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:56.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:56.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:56.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:56.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:56.919][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:56.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:56.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.925][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.930][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.935][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:56.936][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:56.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:56.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:56.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:56.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:56.947][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:56.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:56.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.953][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.958][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:56.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.963][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:56.964][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:56.966][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:56.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:56.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:56.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:56.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:56.977][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:56.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:56.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.983][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.988][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:56.989][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:56.990][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:56.991][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:56.992][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:56.994][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:56.995][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.996][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:56.997][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:56.998][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.000][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.001][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.002][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.003][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.004][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.006][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.007][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.008][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.009][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.010][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.011][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.016][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.021][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.026][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.027][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288]. biodb.DEBUG[2025-08-09 16:03:57.029][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.040][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.046][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.051][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.052][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.053][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:57.059][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:57.061][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:57.062][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.063][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.065][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.066][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.067][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.068][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.069][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.071][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.072][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.073][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.074][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.075][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.077][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.078][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.079][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.080][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:57.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.085][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.090][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.094][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440]. biodb.DEBUG[2025-08-09 16:03:57.097][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.108][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.114][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.119][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.120][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.121][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:57.123][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:57.124][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:57.125][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.126][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.127][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.128][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.130][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.131][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.132][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.133][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.134][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.136][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.137][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.138][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.139][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.140][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.141][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.143][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:57.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.147][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.152][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.157][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892]. biodb.DEBUG[2025-08-09 16:03:57.160][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:57.161][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:03:57.163][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.174][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:57.178][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:57.181][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:57.183][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content. sched.DEBUG[2025-08-09 16:03:57.185][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:57.187][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.199][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.205][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.210][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.214][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:57.216][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.227][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.233][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.238][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.243][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:57.245][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:57.247][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:57.250][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content. sched.DEBUG[2025-08-09 16:03:57.257][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:57.260][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.271][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.278][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.282][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.287][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:57.288][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.300][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.306][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.310][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.318][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:57.320][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.331][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.337][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.342][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.347][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:57.348][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:57.350][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.361][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.367][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.372][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.373][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.374][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:57.375][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:57.376][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:57.377][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.379][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.380][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.381][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.382][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.383][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.384][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.386][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.387][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.388][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.389][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.390][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.392][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.393][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.394][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.395][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:57.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.400][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.404][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.409][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.411][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:03:57.412][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.423][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.429][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.434][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.435][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.436][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:57.437][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:57.439][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:57.440][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.441][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.442][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.443][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.444][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.446][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.447][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.448][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.449][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.450][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.457][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.458][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.460][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.461][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.462][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.463][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:57.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.468][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.473][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.477][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.479][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587]. biodb.DEBUG[2025-08-09 16:03:57.480][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.491][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.497][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.502][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.503][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.504][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:57.505][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:57.507][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:57.508][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.509][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.510][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.511][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.512][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.514][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.515][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.516][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.517][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.518][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.519][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.521][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.522][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.523][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.524][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.525][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:57.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.530][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.535][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.539][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.541][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804]. biodb.DEBUG[2025-08-09 16:03:57.542][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:57.543][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:03:57.545][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.556][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:57.560][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:57.563][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:57.565][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content. sched.DEBUG[2025-08-09 16:03:57.567][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:57.570][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.581][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.587][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.591][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.596][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:57.597][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.608][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.614][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.619][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.624][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:57.625][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.636][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.642][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.652][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.657][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:57.659][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.670][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.676][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.680][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.685][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:57.686][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.697][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.703][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.708][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.713][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:57.714][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.729][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.735][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.740][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.745][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:57.746][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.757][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.763][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.767][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.772][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:57.774][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.784][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.790][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.795][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.800][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:03:57.802][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:57.805][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:57.807][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content. sched.DEBUG[2025-08-09 16:03:57.808][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:57.811][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.822][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.828][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.833][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.838][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:57.839][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.855][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.862][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.867][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.871][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:57.873][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.884][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.890][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.895][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:57.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.899][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:57.901][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:57.903][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.914][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.920][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.924][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.926][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.927][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:57.928][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:57.929][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:57.930][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.931][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.932][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.934][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.935][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.936][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.937][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.938][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.939][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.941][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.942][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.943][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.944][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.945][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.946][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.947][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:57.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.952][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.957][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.963][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799]. biodb.DEBUG[2025-08-09 16:03:57.964][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:57.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:57.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:57.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:57.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:57.975][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:57.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:57.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.981][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.986][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.987][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.989][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:57.990][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:57.991][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:57.992][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:57.993][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.994][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.996][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:57.997][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:57.998][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:57.999][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.000][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.001][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.003][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.004][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.005][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.006][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.007][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.008][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.010][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:58.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.015][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.019][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.024][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.026][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954]. biodb.DEBUG[2025-08-09 16:03:58.027][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.038][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.049][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.055][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.056][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.057][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:58.058][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:58.059][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:58.060][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.062][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.063][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.064][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.065][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.066][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.067][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.069][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.070][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.071][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.072][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.073][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.074][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.076][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.077][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.078][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:58.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.083][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.087][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.092][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.094][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612]. biodb.DEBUG[2025-08-09 16:03:58.095][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:58.096][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.TRACE[2025-08-09 16:03:58.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.126][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.130][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.135][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.140][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.145][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.149][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.154][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.159][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.164][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.168][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.173][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.178][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:58.183][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.194][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:58.198][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:58.201][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:58.203][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/2e865a03592d6effdf242ff63104f35a.content. sched.DEBUG[2025-08-09 16:03:58.204][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. sched.DEBUG[2025-08-09 16:03:58.208][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:58.211][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:58.213][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/f0c73645ca32490f91d503a462d812b2.content. sched.DEBUG[2025-08-09 16:03:58.214][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:58.217][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.228][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.234][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.239][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.249][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:58.251][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.262][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.268][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.272][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.277][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:58.278][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.289][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.295][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.300][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.304][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:58.306][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:58.308][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.318][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.324][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.329][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.330][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.332][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:58.333][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:58.334][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:58.335][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.336][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.337][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.338][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.340][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.341][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.342][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.343][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.344][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.345][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.347][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.348][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.349][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.350][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.351][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.352][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:58.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.357][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.362][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.367][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648]. biodb.DEBUG[2025-08-09 16:03:58.369][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.380][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.387][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.391][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.393][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.394][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:58.395][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:58.396][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:58.397][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.398][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.400][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.401][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.402][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.403][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.404][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.405][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.407][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.408][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.409][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.410][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.411][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.413][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.414][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.415][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:58.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.420][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.424][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.429][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.431][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440]. biodb.DEBUG[2025-08-09 16:03:58.438][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.450][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.456][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.461][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.462][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.463][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:58.464][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:58.465][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:58.466][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.467][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.469][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.470][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.471][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.472][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.473][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.474][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.476][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.477][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.478][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.479][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.480][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.481][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.483][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.484][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:58.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.488][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.493][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.498][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.499][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447]. biodb.DEBUG[2025-08-09 16:03:58.500][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:58.502][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:03:58.504][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.515][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:58.519][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:58.522][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:58.524][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content. sched.DEBUG[2025-08-09 16:03:58.526][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:58.528][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.539][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.545][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.550][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.555][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:58.556][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.567][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.573][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.578][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.582][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:58.584][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.595][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.601][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.606][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.611][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:58.612][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:58.614][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.625][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.636][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.641][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.642][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.644][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:58.645][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:58.646][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:58.647][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.648][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.649][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.650][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.652][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.653][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.654][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.655][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.656][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.657][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.659][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.660][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.661][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.662][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.663][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.664][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:58.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.669][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.674][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.679][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:03:58.681][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.692][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.698][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.703][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.704][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.705][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:58.706][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:58.708][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:58.709][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.710][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.711][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.712][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.713][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.715][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.716][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.717][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.718][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.719][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.721][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.723][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.724][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.726][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.728][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.729][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:58.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.736][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.743][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.748][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.750][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601]. biodb.DEBUG[2025-08-09 16:03:58.751][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.762][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.768][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.773][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.774][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.775][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:58.776][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:58.777][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:58.779][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.780][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.781][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.782][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.783][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.784][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.786][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.787][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.788][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.789][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.790][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.792][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.793][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.794][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.795][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.796][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:58.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.801][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.806][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.811][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.812][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147]. biodb.DEBUG[2025-08-09 16:03:58.813][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:58.815][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:03:58.817][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.833][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:58.837][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:58.840][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:58.844][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content. sched.DEBUG[2025-08-09 16:03:58.845][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:58.848][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.859][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.865][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.870][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.875][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:58.876][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.887][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.893][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.898][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.903][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:58.904][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.915][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.921][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.926][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:58.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.931][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:58.932][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:03:58.934][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:58.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:58.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:58.944][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:58.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:58.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.951][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.955][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.956][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.958][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:58.959][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:58.960][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:58.961][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.962][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.963][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.965][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.966][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.967][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.968][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.969][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.970][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.971][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.973][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:58.974][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.975][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.976][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.977][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.979][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:58.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.983][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.988][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:58.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:58.993][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:58.994][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636]. biodb.DEBUG[2025-08-09 16:03:58.996][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:58.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:58.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:59.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:59.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:59.007][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:59.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:59.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.013][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.018][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.019][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:59.020][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:59.021][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:59.027][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:59.029][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:59.030][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.032][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.033][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.034][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.035][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.036][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.038][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.039][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.040][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:59.041][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:59.042][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.043][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.045][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.046][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.047][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:59.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.052][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.056][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.061][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.063][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199]. biodb.DEBUG[2025-08-09 16:03:59.064][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:59.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:59.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:59.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:59.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:59.075][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:59.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:59.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.081][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.086][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.087][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:59.088][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:03:59.089][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:03:59.090][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:03:59.092][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:59.093][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.094][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.095][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.096][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.097][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.099][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.100][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.101][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.102][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:59.103][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:03:59.105][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.106][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.107][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.108][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.109][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:03:59.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.114][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.119][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.123][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648]. biodb.DEBUG[2025-08-09 16:03:59.126][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:03:59.127][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.TRACE[2025-08-09 16:03:59.152][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:03:59.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:03:59.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.156][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.158][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:03:59.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:03:59.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.161][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.162][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:03:59.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:03:59.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.166][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.172][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:59.173][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:59.174][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.175][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.177][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:59.178][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:59.179][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.180][ef$get] fields variable is a list. biodb.INFO [2025-08-09 16:03:59.182][biodb::testThat] biodb.INFO [2025-08-09 16:03:59.183][biodb::testThat] Running test function test.annotateMzValues_real_values (" annotateMzValues() works correctly with real values. "). biodb.INFO [2025-08-09 16:03:59.185][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:03:59.186][biodb::testThat] biodb.TRACE[2025-08-09 16:03:59.190][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:03:59.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:03:59.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.193][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.195][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:03:59.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:03:59.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.198][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.199][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:03:59.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:03:59.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.203][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.208][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.213][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.217][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.228][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.233][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.237][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.242][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.247][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.252][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.257][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.261][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.266][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:59.270][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:59.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:59.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:59.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:59.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:59.281][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:59.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:03:59.285][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:03:59.287][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:03:59.306][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content. sched.DEBUG[2025-08-09 16:03:59.307][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:03:59.313][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:59.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:59.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:59.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:59.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:59.324][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:59.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:59.326][private$loadEntries] Creating entries from ids [1]: "3014". biodb.DEBUG[2025-08-09 16:03:59.328][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:59.329][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:59.346][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml. biodb.DEBUG[2025-08-09 16:03:59.348][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:59.349][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:59.351][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:59.353][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:59.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:59.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:59.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:59.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:59.364][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:59.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:59.367][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.369][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.370][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.371][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.376][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.377][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:59.378][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:59.380][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.381][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.382][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:59.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:59.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.386][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.387][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:59.388][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:59.389][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.391][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:59.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:59.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.396][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.397][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:59.398][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:59.400][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.401][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:59.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:59.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.406][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.407][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:59.408][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:59.410][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.411][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:59.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:59.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.416][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.417][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:59.418][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:59.420][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.421][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.422][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:59.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:59.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.426][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.427][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:59.428][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.430][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.431][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.432][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:59.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.436][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.437][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:59.438][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:59.439][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.441][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:59.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:59.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.452][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.453][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:59.455][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:59.456][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.457][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:59.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:59.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.462][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.464][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:59.465][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:59.466][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.467][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.469][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:59.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:59.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.472][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.474][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:59.475][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:59.476][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.477][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:59.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:59.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.482][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.487][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.492][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.496][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.501][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.506][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.511][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.515][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.520][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.525][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.530][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:59.531][self$createEntryFromContent] Accession numbers: 3014. biodb.TRACE[2025-08-09 16:03:59.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.536][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.541][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.546][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:59.547][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:59.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:59.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:59.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:59.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:59.558][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:59.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:59.560][private$loadEntries] Creating entries from ids [1]: "7567". biodb.DEBUG[2025-08-09 16:03:59.561][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:59.563][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:59.580][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml. biodb.DEBUG[2025-08-09 16:03:59.581][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:59.583][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:59.584][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:59.586][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:59.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:59.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:59.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:59.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:59.597][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:59.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:59.601][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.602][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.604][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.605][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.610][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.611][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:59.613][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:59.614][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.615][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.616][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:59.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:59.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.620][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.621][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:59.623][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:59.624][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.625][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:59.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:59.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.630][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.632][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:59.633][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:59.634][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.635][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:59.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:59.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.640][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.642][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:59.643][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:59.644][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.645][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:59.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:59.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.656][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.658][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:59.659][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:59.660][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.661][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.663][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:59.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:59.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.667][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.668][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:59.669][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.670][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.672][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.673][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:59.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.677][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.679][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:59.680][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:59.681][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.682][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:59.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:59.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.687][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.689][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:59.690][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:59.691][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.692][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:59.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:59.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.698][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.699][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:59.700][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:59.701][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.702][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:59.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:59.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.708][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.709][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:59.710][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:59.711][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.713][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:59.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:59.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.718][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.723][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.729][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.734][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.739][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.744][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.749][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.754][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.759][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.763][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.768][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:59.769][self$createEntryFromContent] Accession numbers: 7567. biodb.TRACE[2025-08-09 16:03:59.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.774][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.779][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.784][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:03:59.785][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:59.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:59.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:59.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:59.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:59.797][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:59.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:03:59.799][private$loadEntries] Creating entries from ids [1]: "8021". biodb.DEBUG[2025-08-09 16:03:59.800][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:03:59.802][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:03:59.820][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml. biodb.DEBUG[2025-08-09 16:03:59.822][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:03:59.823][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:03:59.825][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:03:59.826][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:03:59.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:03:59.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:03:59.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:03:59.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:03:59.838][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:03:59.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:03:59.842][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.843][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.844][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.846][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.851][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.852][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:59.853][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:59.855][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.856][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:03:59.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:03:59.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.861][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.862][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:59.869][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:59.871][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.872][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:03:59.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:03:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.877][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.879][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:59.880][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:59.881][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.882][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:03:59.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:03:59.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.887][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.889][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:59.890][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:59.891][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.892][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:03:59.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:03:59.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.897][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.899][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:59.900][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:03:59.901][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.902][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.904][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:59.905][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.906][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.907][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.909][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:03:59.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:03:59.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.912][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.914][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:59.915][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:59.916][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.917][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:59.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:03:59.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.922][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.924][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:59.925][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:59.926][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.927][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:03:59.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:03:59.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.933][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.934][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:59.935][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:59.936][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.937][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.939][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:03:59.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:03:59.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.943][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.944][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:59.945][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:59.946][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.948][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:03:59.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:03:59.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.953][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.958][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.967][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:03:59.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.972][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.977][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.982][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.987][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.992][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:03:59.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:03:59.996][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:03:59.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:03:59.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.001][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:00.003][self$createEntryFromContent] Accession numbers: 8021. biodb.TRACE[2025-08-09 16:04:00.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.008][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.012][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.017][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:00.019][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:00.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:00.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:00.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:00.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:00.030][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:00.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:00.032][private$loadEntries] Creating entries from ids [1]: "30382". biodb.DEBUG[2025-08-09 16:04:00.034][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:00.035][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:00.052][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml. biodb.DEBUG[2025-08-09 16:04:00.053][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:00.055][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:00.056][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:00.058][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:00.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:00.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:00.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:00.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:00.070][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:00.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:00.079][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.081][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.082][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.083][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.088][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.089][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:00.091][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:00.092][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.093][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.094][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:00.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:00.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.098][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.099][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:00.101][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:00.102][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.103][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:00.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:00.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.108][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.109][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:00.110][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:00.112][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.113][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:00.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:00.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.118][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.119][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:00.120][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:00.121][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.123][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:00.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:00.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.128][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.129][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:00.130][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:00.131][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.132][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.134][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:00.135][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.136][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.137][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.139][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:00.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.142][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.144][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:00.145][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:00.146][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.147][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:00.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:00.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.152][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.154][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:00.155][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:00.156][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.157][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:00.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:00.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.162][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.164][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:00.165][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:00.166][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.167][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.169][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:00.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:00.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.172][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.174][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:00.175][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:00.176][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.177][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:00.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:00.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.182][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.187][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.192][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.197][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.201][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.206][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.211][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.216][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.221][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.225][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.230][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:00.232][self$createEntryFromContent] Accession numbers: 30382. biodb.TRACE[2025-08-09 16:04:00.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.236][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.241][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.246][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:00.247][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:00.249][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:00.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:00.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:00.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:00.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:00.266][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:00.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:00.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.272][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.277][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.278][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:00.279][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:00.281][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:00.282][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:00.283][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:00.284][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.285][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.287][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.288][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.289][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.290][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.291][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.292][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.294][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:00.295][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:00.296][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.297][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.298][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.299][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.301][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:00.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.305][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.310][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.315][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.316][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014]. biodb.DEBUG[2025-08-09 16:04:00.318][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:00.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:00.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:00.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:00.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:00.329][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:00.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:00.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.335][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.340][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.341][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:00.342][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:00.343][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:00.344][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:00.345][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:00.347][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.348][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.349][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.350][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.351][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.353][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.354][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.355][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.356][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:00.357][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:00.358][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.360][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.361][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.362][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.363][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:00.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.368][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.373][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.377][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.379][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021]. biodb.DEBUG[2025-08-09 16:04:00.380][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:00.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:00.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:00.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:00.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:00.391][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:00.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:00.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.397][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.402][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.403][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:00.405][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:00.406][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:00.407][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:00.408][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:00.409][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.410][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.412][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.413][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.414][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.415][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.416][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.417][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.419][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:00.420][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:00.421][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.422][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.423][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.425][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.426][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:00.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.431][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.435][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.440][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382]. biodb.DEBUG[2025-08-09 16:04:00.443][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:00.444][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:00.446][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:00.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:00.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:00.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:00.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:00.463][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:00.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:00.467][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:00.470][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:00.488][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/4da83335ec00090f05f0a5128074d1f6.content. sched.DEBUG[2025-08-09 16:04:00.489][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:00.493][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:00.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:00.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:00.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:00.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:00.504][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:00.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:00.507][private$loadEntries] Creating entries from ids [1]: "9710". biodb.DEBUG[2025-08-09 16:04:00.508][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:00.510][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:00.526][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml. biodb.DEBUG[2025-08-09 16:04:00.527][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:00.529][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:00.531][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:00.532][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:00.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:00.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:00.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:00.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:00.543][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:00.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:00.547][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.548][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.550][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.551][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.556][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.557][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:00.558][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:00.559][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.561][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.562][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:00.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:00.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.566][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.567][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:00.568][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:00.569][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.570][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:00.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:00.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.576][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.577][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:00.578][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:00.579][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.580][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:00.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:00.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.585][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.587][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:00.588][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:00.589][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.590][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:00.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:00.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.595][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.597][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:00.598][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:00.599][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.600][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.602][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:00.603][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.604][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.605][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.607][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:00.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.610][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.611][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:00.613][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:00.614][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.615][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:00.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:00.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.620][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.621][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:00.623][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:00.624][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.625][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:00.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:00.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.630][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.632][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:00.633][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:00.634][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.635][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.637][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:00.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:00.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.640][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.642][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:00.643][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:00.644][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.645][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:00.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:00.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.650][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.655][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.660][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.665][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.670][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.684][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.689][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.695][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.700][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.705][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.710][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:00.711][self$createEntryFromContent] Accession numbers: 9710. biodb.TRACE[2025-08-09 16:04:00.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.716][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.721][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.727][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:00.729][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:00.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:00.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:00.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:00.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:00.745][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:00.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:00.748][private$loadEntries] Creating entries from ids [1]: "65530". biodb.DEBUG[2025-08-09 16:04:00.749][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:00.751][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:00.768][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml. biodb.DEBUG[2025-08-09 16:04:00.769][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:00.771][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:00.772][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:00.774][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:00.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:00.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:00.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:00.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:00.785][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:00.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:00.789][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.790][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.791][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.793][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.798][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.799][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:00.800][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:00.801][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.802][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:00.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:00.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.807][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.809][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:00.810][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:00.811][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.812][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:00.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:00.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.817][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.819][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:00.820][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:00.821][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.822][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:00.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:00.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.827][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.828][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:00.830][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:00.831][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.832][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:00.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:00.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.837][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.838][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:00.839][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:00.841][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.842][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.843][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:00.844][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.846][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.847][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.848][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:00.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.852][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.853][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:00.854][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:00.856][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.857][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:00.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:00.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.862][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.863][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:00.864][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:00.866][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.867][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:00.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:00.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.872][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.873][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:00.874][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:00.876][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.877][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:00.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:00.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.882][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.883][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:00.884][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:00.886][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.887][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:00.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:00.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.897][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.903][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.908][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.913][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:00.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.918][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.923][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.928][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.932][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.937][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:00.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:00.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.947][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:00.948][self$createEntryFromContent] Accession numbers: 65530. biodb.TRACE[2025-08-09 16:04:00.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.953][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.958][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:00.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:00.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:00.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:00.964][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:00.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:00.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:00.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:00.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:00.975][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:00.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:00.977][private$loadEntries] Creating entries from ids [1]: "72338". biodb.DEBUG[2025-08-09 16:04:00.978][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:00.980][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:00.998][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml. biodb.DEBUG[2025-08-09 16:04:01.000][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:01.001][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:01.003][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:01.005][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:01.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:01.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:01.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:01.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:01.016][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:01.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:01.020][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.021][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.022][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.023][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.028][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.029][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:01.031][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:01.032][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.033][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.034][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:01.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:01.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.038][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.039][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:01.041][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:01.042][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.043][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:01.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:01.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.048][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.049][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:01.050][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:01.052][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.053][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:01.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:01.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.058][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.059][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:01.060][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:01.061][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.063][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:01.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:01.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.068][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.069][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:01.070][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:01.071][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.073][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.074][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:01.075][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.077][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.078][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.079][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:01.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.083][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.084][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.085][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.086][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.088][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.093][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.094][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:01.095][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:01.096][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.098][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:01.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:01.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.108][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.110][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:01.112][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:01.113][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.114][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.116][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:01.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:01.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.119][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.121][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:01.122][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:01.123][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.124][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:01.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:01.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.129][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.134][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.139][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.143][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.148][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.153][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.158][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.163][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.167][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.172][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.177][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:01.178][self$createEntryFromContent] Accession numbers: 72338. biodb.TRACE[2025-08-09 16:04:01.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.183][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.188][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.192][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:01.194][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:01.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:01.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:01.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:01.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:01.204][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:01.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:01.207][private$loadEntries] Creating entries from ids [1]: "77926". biodb.DEBUG[2025-08-09 16:04:01.208][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:01.210][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:01.229][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml. biodb.DEBUG[2025-08-09 16:04:01.231][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:01.232][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:01.234][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:01.235][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:01.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:01.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:01.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:01.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:01.246][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:01.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:01.250][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.252][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.253][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.254][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.259][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.260][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:01.261][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:01.262][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.264][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.265][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:01.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:01.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.269][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.270][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:01.271][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:01.272][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.273][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.275][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:01.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:01.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.278][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.280][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:01.281][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:01.282][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.283][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:01.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:01.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.288][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.289][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:01.291][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:01.292][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.293][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:01.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:01.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.298][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.299][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:01.300][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:01.302][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.303][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.304][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:01.305][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.306][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.308][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.309][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:01.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.318][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.320][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.322][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.323][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.324][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.329][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.330][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:01.332][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:01.333][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.334][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:01.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:01.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.339][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.340][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:01.342][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:01.343][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.344][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.345][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:01.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:01.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.349][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.350][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:01.351][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:01.352][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.354][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:01.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:01.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.358][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.363][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.368][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.373][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.377][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.382][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.387][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.392][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.396][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.401][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.406][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:01.407][self$createEntryFromContent] Accession numbers: 77926. biodb.TRACE[2025-08-09 16:04:01.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.412][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.416][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.421][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:01.422][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:01.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:01.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:01.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:01.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:01.433][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:01.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:01.436][private$loadEntries] Creating entries from ids [1]: "82369". biodb.DEBUG[2025-08-09 16:04:01.437][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:01.439][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:01.476][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml. biodb.DEBUG[2025-08-09 16:04:01.478][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:01.480][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:01.481][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:01.483][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:01.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:01.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:01.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:01.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:01.494][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:01.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:01.498][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.499][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.500][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.502][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.507][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.508][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:01.509][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:01.510][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.512][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.513][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:01.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:01.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.517][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.518][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:01.519][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:01.520][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.522][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:01.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:01.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.527][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.528][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:01.529][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:01.530][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.531][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:01.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:01.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.537][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.543][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:01.545][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:01.546][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.548][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:01.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:01.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.553][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.554][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:01.556][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:01.557][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.558][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.559][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:01.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:01.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.563][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.564][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:01.566][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.567][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.568][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.569][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:01.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.573][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.574][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.575][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.577][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.578][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.583][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.584][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:01.585][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:01.587][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.588][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:01.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:01.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.593][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.594][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:01.595][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:01.597][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.598][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.599][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:01.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:01.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.603][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.604][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:01.605][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:01.606][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.608][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:01.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:01.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.613][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.618][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.622][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.627][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.632][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.637][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.641][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.646][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.651][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.656][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.660][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:01.662][self$createEntryFromContent] Accession numbers: 82369. biodb.TRACE[2025-08-09 16:04:01.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.667][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.671][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.676][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:01.677][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:01.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:01.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:01.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:01.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:01.688][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:01.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:01.691][private$loadEntries] Creating entries from ids [1]: "90204". biodb.DEBUG[2025-08-09 16:04:01.692][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:01.694][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:01.713][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml. biodb.DEBUG[2025-08-09 16:04:01.715][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:01.716][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:01.718][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:01.719][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:01.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:01.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:01.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:01.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:01.731][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:01.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:01.734][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.736][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.737][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.738][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.743][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.744][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:01.746][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:01.747][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.754][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.755][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:01.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:01.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.760][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.761][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:01.762][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:01.764][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.765][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:01.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.770][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.771][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:01.772][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:01.773][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.775][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:01.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:01.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.780][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.781][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:01.782][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:01.783][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.784][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:01.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:01.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.789][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.791][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:01.792][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:01.793][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.794][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.796][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:01.797][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.798][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.799][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.801][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:01.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.805][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.807][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.808][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.809][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:01.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.814][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.815][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:01.816][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:01.817][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.819][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:01.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:01.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.824][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.825][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:01.826][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:01.827][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.829][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.830][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:01.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:01.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.834][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.835][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:01.836][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:01.837][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.838][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:01.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:01.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.843][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.848][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.853][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.858][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:01.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.863][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.867][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.872][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.877][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.882][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.886][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.891][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:01.892][self$createEntryFromContent] Accession numbers: 90204. biodb.TRACE[2025-08-09 16:04:01.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.897][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.902][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:01.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.907][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:01.908][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:01.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:01.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:01.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:01.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:01.919][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:01.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:01.922][private$loadEntries] Creating entries from ids [1]: "132793". biodb.DEBUG[2025-08-09 16:04:01.923][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:01.925][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:01.943][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml. biodb.DEBUG[2025-08-09 16:04:01.945][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:01.946][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:01.947][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:01.949][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:01.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:01.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:01.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:01.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:01.967][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:01.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:01.971][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.972][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.973][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.974][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:01.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:01.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.981][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:01.982][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:01.983][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.984][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.986][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:01.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:01.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.989][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.991][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:01.992][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:01.993][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.994][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:01.996][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:01.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:01.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:01.999][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.001][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:02.002][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:02.003][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.004][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:02.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:02.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.009][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.010][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:02.012][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:02.013][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.014][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:02.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:02.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.019][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.020][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:02.022][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:02.023][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.024][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.025][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:02.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:02.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.029][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.030][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:02.031][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.033][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.034][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.035][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:02.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.039][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.040][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:02.041][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:02.043][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.044][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:02.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:02.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.049][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.050][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:02.051][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:02.052][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.053][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:02.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:02.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.059][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.060][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:02.061][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:02.062][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.063][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.065][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:02.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:02.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.069][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.070][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:02.071][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:02.072][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.073][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:02.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:02.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.078][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.083][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.088][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.093][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.098][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.103][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.107][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.112][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.117][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.122][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:02.128][self$createEntryFromContent] Accession numbers: 132793. biodb.TRACE[2025-08-09 16:04:02.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.133][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.138][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.143][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:02.150][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:02.152][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:02.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:02.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:02.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:02.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:02.164][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:02.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:02.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.170][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.175][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.176][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:02.178][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:02.179][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:02.180][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:02.181][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:02.182][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.184][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.185][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.186][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.187][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.188][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.189][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.191][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.192][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:02.193][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:02.194][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.195][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.196][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.198][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.199][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:02.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.204][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.208][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.213][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.215][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530]. biodb.DEBUG[2025-08-09 16:04:02.216][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:02.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:02.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:02.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:02.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:02.227][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:02.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:02.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.233][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.238][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.239][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:02.240][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:02.242][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:02.243][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:02.244][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:02.245][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.246][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.247][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.249][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.250][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.251][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.252][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.253][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.254][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:02.256][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:02.257][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.258][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.259][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.260][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.262][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:02.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.266][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.271][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.276][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.278][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204]. biodb.DEBUG[2025-08-09 16:04:02.279][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:02.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:02.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:02.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:02.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:02.290][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:02.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:02.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.296][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.301][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.302][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:02.303][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:02.305][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:02.306][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:02.307][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:02.308][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.309][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.311][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.312][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.313][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.314][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.315][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.316][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.318][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:02.319][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:02.320][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.321][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.322][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.324][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.325][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:02.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.330][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.334][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.345][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.347][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793]. biodb.DEBUG[2025-08-09 16:04:02.348][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:02.350][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:02.352][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:02.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:02.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:02.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:02.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:02.363][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:02.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:02.368][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:02.370][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:02.386][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content. sched.DEBUG[2025-08-09 16:04:02.388][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:02.391][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:02.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:02.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:02.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:02.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:02.402][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:02.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:02.404][private$loadEntries] Creating entries from ids [1]: "131378". biodb.DEBUG[2025-08-09 16:04:02.405][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:02.407][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:02.425][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml. biodb.DEBUG[2025-08-09 16:04:02.426][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:02.428][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:02.429][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:02.431][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:02.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:02.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:02.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:02.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:02.442][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:02.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:02.446][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.447][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.449][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.450][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.456][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:02.457][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:02.458][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.460][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.461][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:02.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:02.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.465][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.466][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:02.467][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:02.468][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.469][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.471][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:02.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:02.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.474][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.476][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:02.477][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:02.478][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.479][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:02.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:02.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.484][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.486][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:02.487][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:02.488][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.489][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:02.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:02.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.494][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.496][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:02.497][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:02.498][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.499][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.501][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:02.502][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.503][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.504][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.505][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:02.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.509][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.510][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:02.512][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:02.513][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.514][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:02.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:02.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.519][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.520][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:02.521][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:02.523][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.524][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:02.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:02.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.529][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.530][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:02.532][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:02.533][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.534][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.535][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:02.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:02.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.539][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.540][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:02.542][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:02.543][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.544][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:02.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:02.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.549][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.554][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.559][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.569][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.575][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.580][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.585][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.589][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.594][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.599][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.604][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:02.605][self$createEntryFromContent] Accession numbers: 131378. biodb.TRACE[2025-08-09 16:04:02.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.610][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.615][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.620][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:02.621][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:02.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:02.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:02.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:02.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:02.632][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:02.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:02.634][private$loadEntries] Creating entries from ids [1]: "214202". biodb.DEBUG[2025-08-09 16:04:02.636][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:02.637][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:02.655][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml. biodb.DEBUG[2025-08-09 16:04:02.657][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:02.658][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:02.660][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:02.662][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:02.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:02.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:02.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:02.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:02.673][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:02.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:02.676][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.678][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.679][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.680][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.687][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.689][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:02.690][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:02.691][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.692][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.694][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:02.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:02.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.697][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.699][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:02.700][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:02.701][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.702][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:02.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:02.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.709][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:02.710][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:02.711][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.712][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:02.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:02.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.718][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.719][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:02.720][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:02.721][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.723][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:02.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:02.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.728][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.729][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:02.730][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:02.731][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.733][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.734][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:02.735][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.737][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.738][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.739][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:02.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.743][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.744][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:02.746][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:02.747][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.748][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:02.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:02.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.753][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.754][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:02.756][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:02.757][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.758][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:02.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:02.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.763][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.764][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:02.766][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:02.767][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.768][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.769][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:02.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:02.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.779][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.780][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:02.782][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:02.783][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.785][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:02.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:02.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.790][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.795][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.800][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:02.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.814][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.819][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.823][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.829][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.833][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.838][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:02.839][self$createEntryFromContent] Accession numbers: 214202. biodb.TRACE[2025-08-09 16:04:02.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.844][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.849][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:02.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.854][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:04:02.856][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:02.859][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:02.874][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/8a1fe476d9f07138803c04b6da6259b3.content. sched.DEBUG[2025-08-09 16:04:02.875][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:02.878][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:02.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:02.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:02.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:02.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:02.889][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:02.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:02.892][private$loadEntries] Creating entries from ids [1]: "51836". biodb.DEBUG[2025-08-09 16:04:02.893][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:02.895][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:02.912][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml. biodb.DEBUG[2025-08-09 16:04:02.913][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:02.915][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:02.917][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:02.918][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:02.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:02.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:02.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:02.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:02.929][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:02.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:02.933][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.934][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.936][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.937][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:02.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:02.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.943][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:02.944][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:02.945][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.947][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.948][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:02.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:02.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.952][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.953][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:02.954][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:02.955][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.957][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:02.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:02.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.963][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:02.964][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:02.966][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.967][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:02.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:02.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.972][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.973][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:02.974][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:02.976][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.977][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:02.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:02.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.982][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.983][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:02.984][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:02.986][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.987][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.988][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:02.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:02.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:02.992][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:02.993][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:03.000][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.002][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.003][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.005][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:03.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.009][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.010][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:03.012][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:03.013][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.014][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:03.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:03.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.019][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.020][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:03.022][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:03.023][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.024][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:03.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:03.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.029][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.031][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:03.032][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:03.033][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.034][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.036][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:03.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:03.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.039][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.040][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:03.042][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:03.043][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.044][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:03.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:03.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.049][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.054][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.064][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.068][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.073][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.078][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.083][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.088][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.092][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.097][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:03.098][self$createEntryFromContent] Accession numbers: 51836. biodb.TRACE[2025-08-09 16:04:03.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.103][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.108][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.113][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:03.114][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:03.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:03.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:03.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:03.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:03.125][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:03.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:03.128][private$loadEntries] Creating entries from ids [1]: "51837". biodb.DEBUG[2025-08-09 16:04:03.129][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:03.131][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:03.147][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml. biodb.DEBUG[2025-08-09 16:04:03.149][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:03.150][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:03.152][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:03.154][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:03.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:03.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:03.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:03.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:03.165][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:03.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:03.169][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.170][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.172][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.173][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.178][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.179][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:03.181][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:03.182][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.183][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.184][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:03.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:03.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.188][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.189][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:03.191][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:03.192][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.193][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:03.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:03.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.198][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.199][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:03.201][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:03.208][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.209][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:03.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:03.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.215][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.216][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:03.218][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:03.219][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.220][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:03.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:03.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.225][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.226][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:03.228][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:03.229][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.230][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.231][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:03.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:03.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.235][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.236][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:03.238][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.239][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.240][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.241][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:03.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.245][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.246][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:03.247][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:03.249][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.250][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:03.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:03.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.255][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.256][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:03.257][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:03.258][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.260][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:03.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:03.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.265][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.266][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:03.267][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:03.268][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.270][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.271][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:03.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:03.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.275][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.276][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:03.277][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:03.278][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.279][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.281][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:03.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:03.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.285][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.289][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.294][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.299][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.304][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.309][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.313][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.318][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.323][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.328][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.332][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:03.334][self$createEntryFromContent] Accession numbers: 51837. biodb.TRACE[2025-08-09 16:04:03.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.339][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.343][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.348][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:03.349][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:03.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:03.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:03.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:03.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:03.361][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:03.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:03.363][private$loadEntries] Creating entries from ids [1]: "132205". biodb.DEBUG[2025-08-09 16:04:03.364][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:03.366][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:03.383][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml. biodb.DEBUG[2025-08-09 16:04:03.385][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:03.386][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:03.388][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:03.390][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:03.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:03.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:03.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:03.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:03.401][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:03.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:03.405][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.406][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.407][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.414][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.420][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.421][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:03.423][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:03.424][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.425][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.426][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:03.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:03.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.430][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.431][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:03.432][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:03.434][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.435][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:03.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:03.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.440][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.441][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:03.442][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:03.443][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.444][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:03.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:03.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.449][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.451][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:03.452][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:03.453][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.454][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:03.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:03.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.459][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.460][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:03.462][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:03.463][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.464][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.465][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:03.467][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.468][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.469][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.470][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:03.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.474][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.475][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:03.476][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:03.477][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.479][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:03.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:03.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.484][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.485][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:03.486][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:03.487][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.488][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:03.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:03.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.494][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.495][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:03.496][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:03.497][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.498][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.500][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:03.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:03.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.503][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.505][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:03.506][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:03.507][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.508][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:03.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:03.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.518][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.523][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.527][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.532][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.537][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.542][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.546][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.551][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.556][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:03.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:03.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.561][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:03.562][self$createEntryFromContent] Accession numbers: 132205. biodb.TRACE[2025-08-09 16:04:03.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.567][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.572][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.576][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:03.578][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:03.580][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:03.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:03.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:03.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:03.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:03.590][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:03.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:03.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.602][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.607][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.609][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.610][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:03.611][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:03.612][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:03.613][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.614][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.616][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.617][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.618][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.619][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.620][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.621][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.622][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.624][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.625][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.626][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.627][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.628][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.629][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.631][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:03.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.635][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.640][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.645][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836]. biodb.DEBUG[2025-08-09 16:04:03.648][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:03.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:03.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:03.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:03.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:03.658][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:03.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:03.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.664][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.669][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.670][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.671][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:03.673][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:03.674][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:03.675][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.676][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.677][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.678][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.679][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.681][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.682][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.683][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.684][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.685][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.686][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.688][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.689][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.690][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.691][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.692][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:03.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.697][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.702][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.706][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.708][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837]. biodb.DEBUG[2025-08-09 16:04:03.709][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:03.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:03.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:03.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:03.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:03.722][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:03.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:03.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.731][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.737][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.739][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.741][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:03.742][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:03.744][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:03.746][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.747][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.749][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.750][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.751][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.752][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.754][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.755][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.756][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.757][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.758][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.760][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.761][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.762][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.763][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.765][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:03.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.770][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.774][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.779][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.781][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205]. biodb.DEBUG[2025-08-09 16:04:03.782][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:03.783][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:03.817][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:03.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:03.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:03.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:03.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:03.828][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:03.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:03.832][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:03.835][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:03.837][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content. sched.DEBUG[2025-08-09 16:04:03.838][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:03.841][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:03.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:03.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:03.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:03.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:03.852][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:03.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:03.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.858][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.863][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.868][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:04:03.870][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:03.873][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:03.875][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content. sched.DEBUG[2025-08-09 16:04:03.876][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:03.879][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:03.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:03.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:03.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:03.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:03.890][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:03.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:03.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.896][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.901][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.906][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:03.907][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:03.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:03.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:03.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:03.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:03.918][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:03.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:03.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.924][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.929][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:03.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.934][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:03.935][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:03.937][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:03.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:03.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:03.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:03.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:03.948][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:03.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:03.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.954][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.959][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.960][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.961][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:03.962][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:03.964][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:03.965][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.966][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.967][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.969][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.970][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.971][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.972][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.973][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.974][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.976][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.977][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:03.978][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.979][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.981][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.982][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.983][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:03.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.988][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:03.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:03.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:03.999][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.006][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288]. biodb.DEBUG[2025-08-09 16:04:04.007][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.019][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.025][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.030][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.031][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.032][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:04.033][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:04.034][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:04.036][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.037][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.038][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.039][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.040][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.042][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.043][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.044][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.047][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.048][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.049][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.051][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.052][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.053][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.054][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.056][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:04.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.060][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.065][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.070][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.071][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440]. biodb.DEBUG[2025-08-09 16:04:04.073][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.084][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.090][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.095][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.096][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.097][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:04.098][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:04.099][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:04.100][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.101][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.103][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.104][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.105][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.106][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.107][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.109][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.110][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.111][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.112][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.113][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.114][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.116][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.117][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.118][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:04.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.123][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.132][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.134][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892]. biodb.DEBUG[2025-08-09 16:04:04.135][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:04.136][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:04.138][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.150][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:04.154][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:04.157][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:04.159][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content. sched.DEBUG[2025-08-09 16:04:04.160][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:04.163][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.174][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.180][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.190][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.197][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:04.198][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.209][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.215][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.220][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.225][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:04:04.227][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:04.230][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:04.233][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content. sched.DEBUG[2025-08-09 16:04:04.234][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:04.237][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.248][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.254][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.258][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.263][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:04.264][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.275][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.281][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.286][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.291][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:04.292][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.303][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.309][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.314][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.318][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:04.320][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:04.322][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.333][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.339][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.344][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.345][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.346][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:04.347][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:04.348][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:04.350][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.351][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.352][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.353][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.354][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.356][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.357][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.358][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.359][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.360][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.362][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.363][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.364][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.365][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.366][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.367][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:04.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.372][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.377][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.389][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.391][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:04:04.392][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.403][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.409][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.414][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.415][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.416][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:04.418][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:04.419][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:04.420][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.421][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.422][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.423][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.425][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.426][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.427][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.428][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.429][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.430][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.432][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.433][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.434][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.435][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.436][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.438][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:04.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.442][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.447][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.452][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.454][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587]. biodb.DEBUG[2025-08-09 16:04:04.455][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.466][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.472][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.477][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.478][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.479][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:04.480][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:04.481][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:04.483][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.484][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.485][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.486][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.487][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.488][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.490][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.491][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.492][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.493][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.494][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.496][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.497][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.498][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.499][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.500][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:04.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.505][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.510][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.515][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.516][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804]. biodb.DEBUG[2025-08-09 16:04:04.517][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:04.518][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:04.521][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.532][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:04.536][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:04.539][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:04.541][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content. sched.DEBUG[2025-08-09 16:04:04.543][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:04.546][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.557][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.563][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.568][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.578][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:04.580][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.591][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.597][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.602][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.607][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:04.608][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.619][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.625][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.630][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.635][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:04.636][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.647][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.653][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.658][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.663][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:04.664][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.675][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.681][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.686][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.691][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:04.692][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.703][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.714][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.719][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:04.721][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.733][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.739][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.744][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.749][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:04.750][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.761][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.767][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.778][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.783][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:04:04.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:04.788][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:04.791][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content. sched.DEBUG[2025-08-09 16:04:04.792][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:04.794][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.805][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.811][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.816][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.821][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:04.822][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.833][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.839][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.844][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.849][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:04.850][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.861][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.867][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.872][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:04.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.877][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:04.878][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:04.880][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.891][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.897][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.901][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.903][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.904][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:04.905][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:04.906][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:04.907][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.908][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.910][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.911][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.912][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.913][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.914][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.915][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.917][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.918][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.919][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.920][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.921][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.923][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.924][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.925][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:04.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.930][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.935][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.940][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.941][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799]. biodb.DEBUG[2025-08-09 16:04:04.942][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:04.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:04.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:04.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:04.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:04.954][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:04.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:04.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.960][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.975][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.977][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.978][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:04.979][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:04.980][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:04.981][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.983][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.984][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.985][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.986][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.987][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.989][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.990][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.991][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.992][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.993][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:04.995][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.996][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:04.997][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:04.998][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:04.999][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:05.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.009][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.014][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954]. biodb.DEBUG[2025-08-09 16:04:05.017][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:05.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:05.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:05.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:05.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:05.028][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:05.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:05.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.034][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.039][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.040][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:05.041][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:05.042][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:05.043][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:05.044][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:05.045][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.047][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.048][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.049][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.050][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.051][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.053][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.054][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.055][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:05.056][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:05.057][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.059][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.060][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.061][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.062][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:05.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.067][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.072][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.077][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.078][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612]. biodb.DEBUG[2025-08-09 16:04:05.079][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:05.080][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:05.107][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:05.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:05.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:05.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:05.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:05.118][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:05.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:05.122][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:05.125][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:05.143][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content. sched.DEBUG[2025-08-09 16:04:05.144][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:05.147][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:05.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:05.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:05.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:05.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:05.158][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:05.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:05.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.165][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.169][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.174][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:05.176][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:05.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:05.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:05.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:05.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:05.193][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:05.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:05.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.199][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.204][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.209][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:05.210][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:05.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:05.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:05.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:05.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:05.221][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:05.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:05.224][private$loadEntries] Creating entries from ids [1]: "28243". biodb.DEBUG[2025-08-09 16:04:05.225][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:05.227][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:05.245][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml. biodb.DEBUG[2025-08-09 16:04:05.247][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:05.248][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:05.250][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:05.252][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:05.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:05.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:05.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:05.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:05.263][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:05.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:05.266][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.268][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.269][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.270][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.275][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.276][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:05.278][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:05.279][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.280][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:05.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:05.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.285][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.286][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:05.287][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:05.289][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.290][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:05.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:05.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.295][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.296][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:05.297][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:05.298][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.299][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:05.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:05.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.304][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.306][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:05.307][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:05.308][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.309][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:05.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:05.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.314][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.316][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:05.317][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:05.318][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.319][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.321][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:05.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:05.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.324][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.325][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:05.327][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.328][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.329][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.330][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:05.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.334][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.335][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:05.336][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:05.338][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.339][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:05.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:05.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.344][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.345][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:05.346][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:05.348][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.349][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:05.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:05.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.354][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.355][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:05.357][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:05.358][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.359][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.360][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:05.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:05.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.364][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.365][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:05.367][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:05.368][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.369][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:05.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:05.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.374][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.379][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.384][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.394][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.400][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.405][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.410][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.415][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.420][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.424][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.429][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:05.430][self$createEntryFromContent] Accession numbers: 28243. biodb.TRACE[2025-08-09 16:04:05.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.435][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.440][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.445][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:05.446][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:05.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:05.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:05.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:05.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:05.457][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:05.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:05.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.463][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.468][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.473][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:05.474][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:05.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:05.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:05.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:05.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:05.485][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:05.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:05.487][private$loadEntries] Creating entries from ids [1]: "70786". biodb.DEBUG[2025-08-09 16:04:05.488][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:05.490][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:05.508][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml. biodb.DEBUG[2025-08-09 16:04:05.510][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:05.512][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:05.513][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:05.515][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:05.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:05.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:05.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:05.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:05.526][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:05.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:05.530][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.531][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.533][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.536][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.541][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.542][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:05.544][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:05.545][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.546][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.548][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:05.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:05.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.551][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.553][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:05.554][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:05.555][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.556][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:05.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:05.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.561][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.563][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:05.564][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:05.565][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.566][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:05.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:05.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.571][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.573][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:05.574][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:05.575][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.576][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:05.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.581][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.583][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:05.584][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:05.585][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.586][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.588][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:05.589][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.590][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.591][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.593][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:05.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.596][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.598][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:05.599][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:05.606][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.607][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:05.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:05.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.613][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.614][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:05.616][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:05.617][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.618][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:05.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:05.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.623][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.625][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:05.626][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:05.627][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.628][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.630][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:05.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:05.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.633][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.634][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:05.636][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:05.637][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.638][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:05.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:05.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.643][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.648][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.653][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.662][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.667][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.672][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.677][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.682][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.687][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.691][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:05.692][self$createEntryFromContent] Accession numbers: 70786. biodb.TRACE[2025-08-09 16:04:05.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.697][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.702][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:05.708][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:05.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:05.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:05.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:05.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:05.719][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:05.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:05.722][private$loadEntries] Creating entries from ids [1]: "78144". biodb.DEBUG[2025-08-09 16:04:05.724][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:05.727][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:05.745][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml. biodb.DEBUG[2025-08-09 16:04:05.746][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:05.748][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:05.749][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:05.751][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:05.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:05.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:05.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:05.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:05.762][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:05.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:05.766][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.767][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.768][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.770][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.775][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.776][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:05.777][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:05.779][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.780][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.781][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:05.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:05.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.785][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.786][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:05.788][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:05.789][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.790][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.791][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:05.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:05.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.795][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.796][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:05.797][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:05.799][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.800][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.801][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:05.803][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:05.804][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.805][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.806][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:05.808][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:05.809][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.815][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.817][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:05.819][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.820][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.821][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.823][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:05.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.827][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.828][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:05.829][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:05.830][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.832][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:05.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:05.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.837][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.838][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:05.839][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:05.840][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.842][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:05.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:05.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.847][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.848][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:05.849][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:05.850][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.851][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.853][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:05.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:05.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.856][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.858][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:05.859][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:05.860][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.861][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:05.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:05.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.866][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.871][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.876][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.881][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.885][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.890][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.895][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.900][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.905][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.909][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:05.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:05.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.914][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:05.915][self$createEntryFromContent] Accession numbers: 78144. biodb.TRACE[2025-08-09 16:04:05.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.920][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.925][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:05.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.930][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:05.931][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:05.933][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:05.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:05.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:05.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:05.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:05.944][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:05.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:05.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.950][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.955][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.956][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:05.957][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:05.958][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:05.959][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:05.961][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:05.962][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.963][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.964][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.965][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.967][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.968][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.969][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.970][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.971][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:05.973][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:05.974][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.975][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.976][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.977][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.978][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:05.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.983][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.988][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:05.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:05.993][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:05.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440]. biodb.DEBUG[2025-08-09 16:04:05.996][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.014][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:06.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.020][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.024][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.026][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.027][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:06.028][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:06.029][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:06.030][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.031][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.033][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.034][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.035][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.036][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.037][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.039][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.040][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.041][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.042][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.043][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.044][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.046][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.047][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.048][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:06.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.053][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.057][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.062][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.064][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243]. biodb.DEBUG[2025-08-09 16:04:06.065][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.076][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:06.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.082][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.087][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.088][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.089][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:06.090][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:06.091][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:06.092][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.094][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.095][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.096][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.097][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.098][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.100][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.101][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.102][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.103][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.104][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.105][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.107][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.108][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.109][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.110][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:06.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.115][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.120][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.124][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144]. biodb.DEBUG[2025-08-09 16:04:06.127][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:06.128][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:06.130][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.142][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:06.146][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:06.149][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:06.168][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/a1f794ee7474001c459ff6d20307d75d.content. sched.DEBUG[2025-08-09 16:04:06.170][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:06.175][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.186][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:06.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.192][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.197][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.202][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:06.203][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.221][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:06.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.227][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.232][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.237][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:06.238][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.249][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:06.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.256][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.260][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.265][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:06.266][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:06.268][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.279][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:06.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.285][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.290][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.291][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.292][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:06.294][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:06.295][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:06.296][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.297][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.298][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.299][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.301][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.302][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.303][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.304][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.305][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.306][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.308][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.309][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.310][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.311][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.312][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.313][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:06.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.318][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.323][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.328][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.329][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:04:06.331][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.341][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:06.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.348][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.352][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.354][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.355][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:06.356][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:06.357][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:06.358][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.359][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.361][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.362][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.363][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.364][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.365][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.367][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.368][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.369][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.370][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.371][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.373][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.374][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.375][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.376][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:06.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.381][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.386][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.391][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.392][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587]. biodb.DEBUG[2025-08-09 16:04:06.393][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.411][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:06.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.418][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.422][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.424][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.425][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:06.426][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:06.427][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:06.428][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.430][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.431][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.432][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.433][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.434][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.435][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.437][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.438][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.439][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.440][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:06.441][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.442][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.444][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.445][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.446][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:06.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.451][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.455][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.460][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.462][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804]. biodb.DEBUG[2025-08-09 16:04:06.463][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:06.464][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:06.466][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.477][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:06.481][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:06.484][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:06.502][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content. sched.DEBUG[2025-08-09 16:04:06.504][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:06.507][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.518][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:06.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.524][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.529][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.534][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:06.535][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.546][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:06.549][private$loadEntries] Creating entries from ids [1]: "47739". biodb.DEBUG[2025-08-09 16:04:06.550][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:06.552][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:06.571][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml. biodb.DEBUG[2025-08-09 16:04:06.572][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:06.574][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:06.575][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:06.577][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.588][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:06.592][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.593][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.594][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.596][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.601][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.602][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:06.603][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:06.605][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.606][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.607][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:06.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:06.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.611][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.612][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:06.613][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:06.615][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.616][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:06.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:06.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.621][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.622][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:06.623][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:06.630][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.632][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:06.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:06.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.638][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.639][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:06.641][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:06.642][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.643][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:06.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:06.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.648][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.649][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:06.651][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:06.652][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.653][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.654][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:06.656][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.657][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.658][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.659][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:06.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.663][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.664][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:06.665][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:06.667][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.668][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:06.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:06.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.673][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.674][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:06.675][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:06.676][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.678][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:06.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:06.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.683][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.684][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:06.685][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:06.686][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.688][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.689][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:06.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:06.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.693][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.694][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:06.695][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:06.696][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.697][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:06.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:06.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.702][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.712][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.717][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.722][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.729][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.735][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.739][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.744][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.749][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.754][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:06.755][self$createEntryFromContent] Accession numbers: 47739. biodb.TRACE[2025-08-09 16:04:06.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.760][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.765][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.770][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:06.771][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.783][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:06.785][private$loadEntries] Creating entries from ids [1]: "51744". biodb.DEBUG[2025-08-09 16:04:06.786][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:06.788][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:06.807][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml. biodb.DEBUG[2025-08-09 16:04:06.809][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:06.811][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:06.813][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:06.815][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:06.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:06.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:06.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:06.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:06.826][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:06.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:06.830][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.831][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.833][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.834][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.845][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.847][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:06.848][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:06.849][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.851][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:06.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:06.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.856][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.857][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:06.858][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:06.860][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.861][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:06.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:06.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.866][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.867][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:06.868][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:06.869][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.871][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:06.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:06.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.876][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.877][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:06.878][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:06.879][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.881][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:06.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:06.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.886][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.887][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:06.888][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:06.889][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.890][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.892][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:06.893][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.894][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.895][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.897][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:06.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.900][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.902][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:06.903][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:06.904][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.905][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:06.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:06.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.910][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.912][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:06.913][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:06.914][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.915][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:06.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:06.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.920][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.922][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:06.923][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:06.924][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.927][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.928][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:06.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:06.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.932][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.933][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:06.935][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:06.936][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.937][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:06.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:06.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.947][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.952][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.956][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:06.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.961][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.966][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.971][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.975][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.981][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.985][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:06.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:06.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.990][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:06.991][self$createEntryFromContent] Accession numbers: 51744. biodb.TRACE[2025-08-09 16:04:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:06.996][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:06.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:06.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.006][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:07.007][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:07.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:07.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:07.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:07.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:07.018][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:07.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:07.021][private$loadEntries] Creating entries from ids [1]: "64473". biodb.DEBUG[2025-08-09 16:04:07.022][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:07.024][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:07.042][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml. biodb.DEBUG[2025-08-09 16:04:07.049][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:07.051][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:07.053][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:07.055][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:07.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:07.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:07.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:07.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:07.067][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:07.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:07.071][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.072][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.073][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.074][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.079][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.081][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:07.082][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:07.083][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.084][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.086][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:07.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:07.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.090][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.091][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:07.092][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:07.093][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.094][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:07.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:07.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.099][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.101][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:07.102][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:07.103][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.104][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:07.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:07.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.109][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.111][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:07.112][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:07.113][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.114][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:07.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:07.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.119][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.121][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:07.122][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:07.123][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.124][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.126][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:07.127][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.128][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.129][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.131][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:07.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.134][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.136][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.137][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.138][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.139][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.144][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.146][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:07.147][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:07.148][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.149][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:07.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:07.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.154][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.156][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:07.157][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:07.158][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.159][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:07.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:07.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.164][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.165][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:07.167][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:07.168][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.169][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:07.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:07.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.174][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.179][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.184][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.194][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.199][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.203][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.208][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.213][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.218][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.223][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:07.224][self$createEntryFromContent] Accession numbers: 64473. biodb.TRACE[2025-08-09 16:04:07.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.229][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.240][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.246][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:07.247][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:07.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:07.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:07.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:07.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:07.258][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:07.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:07.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.265][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.269][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.274][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:07.275][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:07.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:07.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:07.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:07.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:07.286][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:07.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:07.289][private$loadEntries] Creating entries from ids [1]: "75244". biodb.DEBUG[2025-08-09 16:04:07.290][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:07.292][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:07.310][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml. biodb.DEBUG[2025-08-09 16:04:07.312][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:07.313][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:07.315][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:07.317][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:07.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:07.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:07.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:07.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:07.328][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:07.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:07.332][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.333][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.334][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.335][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.340][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.342][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:07.343][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:07.344][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.345][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.347][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:07.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:07.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.350][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.351][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:07.353][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:07.354][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.355][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:07.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:07.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.360][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.361][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:07.363][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:07.364][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.365][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:07.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:07.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.370][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.371][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:07.372][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:07.374][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.375][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:07.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:07.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.380][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.381][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:07.382][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:07.383][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.385][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.386][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:07.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:07.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.390][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.391][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:07.392][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.393][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.395][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.396][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:07.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.400][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.401][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.402][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.403][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.404][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.410][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.411][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:07.412][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:07.413][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.415][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:07.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:07.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.420][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.421][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:07.422][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:07.424][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.425][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.426][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:07.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:07.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.430][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.431][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:07.432][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:07.433][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.435][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:07.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:07.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.440][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.451][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.456][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.461][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.466][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.471][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.476][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.480][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.485][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.490][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.495][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:07.496][self$createEntryFromContent] Accession numbers: 75244. biodb.TRACE[2025-08-09 16:04:07.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.501][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.506][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.510][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:07.512][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:07.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:07.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:07.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:07.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:07.523][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:07.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:07.525][private$loadEntries] Creating entries from ids [1]: "75311". biodb.DEBUG[2025-08-09 16:04:07.526][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:07.528][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:07.546][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml. biodb.DEBUG[2025-08-09 16:04:07.547][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:07.549][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:07.550][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:07.552][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:07.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:07.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:07.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:07.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:07.563][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:07.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:07.567][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.568][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.569][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.570][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.575][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.577][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:07.578][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:07.579][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.580][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.582][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:07.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:07.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.585][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.587][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:07.588][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:07.589][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.590][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:07.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:07.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.596][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:07.598][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:07.599][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.600][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:07.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:07.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.605][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.606][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:07.608][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:07.609][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.610][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:07.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:07.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.615][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.616][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:07.618][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:07.619][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.620][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.621][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:07.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:07.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.625][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.626][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:07.628][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.629][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.630][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.631][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:07.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.635][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.636][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.638][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.639][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.640][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.645][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.652][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:07.654][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:07.655][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.657][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:07.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:07.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.662][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.663][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:07.665][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:07.666][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.667][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.668][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:07.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:07.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.672][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.673][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:07.675][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:07.676][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.677][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:07.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:07.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.682][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.687][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.692][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.696][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.701][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.706][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.711][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.715][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.720][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.726][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.732][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:07.733][self$createEntryFromContent] Accession numbers: 75311. biodb.TRACE[2025-08-09 16:04:07.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.738][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.743][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.747][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:07.749][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:07.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:07.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:07.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:07.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:07.760][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:07.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:07.762][private$loadEntries] Creating entries from ids [1]: "75350". biodb.DEBUG[2025-08-09 16:04:07.763][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:07.765][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:07.783][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml. biodb.DEBUG[2025-08-09 16:04:07.784][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:07.786][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:07.787][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:07.789][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:07.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:07.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:07.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:07.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:07.800][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:07.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:07.804][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.805][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.806][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.807][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.814][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:07.815][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:07.816][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.817][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.819][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:07.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:07.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.823][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.824][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:07.825][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:07.826][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.827][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:07.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:07.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.833][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.834][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:07.835][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:07.836][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.837][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:07.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:07.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.843][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.844][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:07.845][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:07.846][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.847][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:07.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:07.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.858][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.860][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:07.862][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:07.863][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.864][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.866][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:07.867][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.868][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.869][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.871][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:07.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.874][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.876][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.877][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.878][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.879][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:07.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.884][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.886][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:07.887][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:07.888][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.889][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:07.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:07.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.894][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.895][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:07.897][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:07.898][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.899][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.900][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:07.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:07.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.904][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.905][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:07.907][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:07.908][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.909][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:07.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:07.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.914][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.919][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.923][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.928][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:07.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.933][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.938][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.947][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.952][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.957][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:07.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:07.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:07.963][self$createEntryFromContent] Accession numbers: 75350. biodb.TRACE[2025-08-09 16:04:07.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.968][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.972][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:07.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:07.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:07.977][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:07.978][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:07.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:07.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:07.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:07.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:07.989][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:07.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:07.992][private$loadEntries] Creating entries from ids [1]: "87236". biodb.DEBUG[2025-08-09 16:04:07.993][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:07.995][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:08.013][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml. biodb.DEBUG[2025-08-09 16:04:08.015][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:08.016][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:08.018][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:08.020][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:08.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:08.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:08.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:08.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:08.031][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:08.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:08.035][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.036][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.037][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.038][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.043][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.045][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:08.046][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:08.047][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.048][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:08.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:08.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.053][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.055][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:08.056][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:08.063][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.064][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:08.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:08.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.070][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.071][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:08.073][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:08.074][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.075][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:08.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:08.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.080][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.081][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:08.083][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:08.084][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.085][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:08.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:08.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.090][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.091][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:08.093][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:08.094][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.095][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.096][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:08.098][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.099][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.100][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.101][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:08.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.105][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.106][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.107][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.109][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.110][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.115][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.116][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:08.117][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:08.118][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.119][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:08.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:08.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.125][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.126][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:08.127][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:08.128][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.130][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.131][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:08.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:08.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.135][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.136][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:08.137][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:08.138][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.139][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:08.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:08.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.144][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.149][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.154][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.159][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.164][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.168][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.173][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.178][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.183][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.187][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.192][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:08.193][self$createEntryFromContent] Accession numbers: 87236. biodb.TRACE[2025-08-09 16:04:08.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.198][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.203][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.208][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:08.209][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:08.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:08.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:08.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:08.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:08.220][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:08.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:08.223][private$loadEntries] Creating entries from ids [1]: "132193". biodb.DEBUG[2025-08-09 16:04:08.224][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:08.226][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:08.245][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml. biodb.DEBUG[2025-08-09 16:04:08.246][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:08.248][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:08.249][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:08.251][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:08.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:08.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:08.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:08.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:08.268][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:08.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:08.273][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.274][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.275][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.277][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.282][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.283][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:08.284][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:08.285][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.287][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.288][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:08.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:08.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.292][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.293][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:08.294][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:08.295][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.296][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:08.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:08.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.302][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.303][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:08.304][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:08.305][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.306][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:08.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:08.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.311][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.313][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:08.314][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:08.315][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.316][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:08.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:08.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.321][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.323][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:08.324][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:08.325][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.326][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.328][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:08.329][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.330][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.331][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.333][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:08.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.336][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.338][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.339][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.340][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.341][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.346][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.347][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:08.349][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:08.350][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.351][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:08.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:08.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.356][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.358][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:08.359][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:08.360][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.361][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:08.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:08.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.366][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.367][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:08.369][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:08.370][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.371][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:08.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:08.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.376][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.381][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.386][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.390][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.395][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.400][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.405][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.410][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.415][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.420][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.424][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:08.426][self$createEntryFromContent] Accession numbers: 132193. biodb.TRACE[2025-08-09 16:04:08.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.435][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.440][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:08.441][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:08.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:08.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:08.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:08.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:08.460][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:08.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:08.462][private$loadEntries] Creating entries from ids [1]: "146002". biodb.DEBUG[2025-08-09 16:04:08.464][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:08.465][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:08.484][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml. biodb.DEBUG[2025-08-09 16:04:08.486][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:08.487][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:08.489][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:08.491][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:08.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:08.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:08.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:08.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:08.502][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:08.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:08.506][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.507][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.508][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.509][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.514][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.516][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:08.517][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:08.518][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.519][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.521][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:08.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:08.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.524][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.526][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:08.527][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:08.528][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.529][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:08.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:08.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.534][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.535][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:08.537][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:08.538][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.539][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:08.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:08.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.544][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.545][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:08.546][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:08.548][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.549][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:08.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:08.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.554][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.555][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:08.556][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:08.557][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.558][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.560][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:08.561][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.562][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.563][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.565][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:08.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.568][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.570][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.571][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.572][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.573][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.578][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.579][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:08.581][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:08.582][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.583][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:08.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:08.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.589][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.590][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:08.591][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:08.592][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.593][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.595][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:08.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:08.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.598][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.600][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:08.601][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:08.602][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.603][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:08.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:08.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.608][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.613][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.618][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.623][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.628][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.633][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.637][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.642][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.647][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.658][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.664][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:08.665][self$createEntryFromContent] Accession numbers: 146002. biodb.TRACE[2025-08-09 16:04:08.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.670][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.675][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.680][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:08.681][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:08.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:08.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:08.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:08.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:08.692][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:08.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:08.694][private$loadEntries] Creating entries from ids [1]: "65641". biodb.DEBUG[2025-08-09 16:04:08.695][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:08.697][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:08.716][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml. biodb.DEBUG[2025-08-09 16:04:08.717][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:08.719][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:08.721][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:08.722][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:08.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:08.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:08.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:08.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:08.734][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:08.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:08.738][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.740][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.741][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.742][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.748][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.749][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:08.750][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:08.751][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.752][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.754][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:08.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:08.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.758][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.760][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:08.761][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:08.762][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.763][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:08.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:08.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.769][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.770][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:08.771][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:08.772][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.773][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:08.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:08.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.779][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.781][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:08.782][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:08.783][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.784][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:08.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:08.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.789][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.791][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:08.792][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:08.793][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.794][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.796][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:08.797][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.798][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.799][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.801][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:08.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.805][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.806][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.807][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.809][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.810][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:08.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.816][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.818][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:08.819][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:08.820][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.822][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:08.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:08.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.827][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.828][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:08.829][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:08.831][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.832][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.833][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:08.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:08.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.837][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.838][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:08.840][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:08.841][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.842][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:08.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:08.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.847][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.852][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.857][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.861][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:08.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.873][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.878][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.883][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.888][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.893][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.898][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.902][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:08.903][self$createEntryFromContent] Accession numbers: 65641. biodb.TRACE[2025-08-09 16:04:08.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.908][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.913][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:08.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.918][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:08.919][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:08.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:08.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:08.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:08.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:08.930][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:08.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:08.933][private$loadEntries] Creating entries from ids [1]: "144071". biodb.DEBUG[2025-08-09 16:04:08.934][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:08.936][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:08.952][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml. biodb.DEBUG[2025-08-09 16:04:08.954][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:08.955][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:08.957][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:08.959][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:08.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:08.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:08.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:08.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:08.970][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:08.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:08.973][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.975][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.976][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.977][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:08.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:08.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.982][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.983][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:08.984][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:08.986][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.987][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.988][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:08.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:08.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.992][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.993][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:08.994][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:08.995][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:08.997][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:08.998][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:09.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:09.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.002][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.003][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:09.004][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:09.006][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.007][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:09.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.012][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.013][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:09.014][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:09.015][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.017][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:09.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:09.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.022][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.023][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:09.024][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:09.025][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.027][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.028][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:09.029][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.031][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.032][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.033][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:09.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.037][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.038][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.040][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.041][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.042][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.047][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.048][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:09.050][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:09.051][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.052][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:09.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:09.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.057][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.059][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:09.060][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:09.061][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.062][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.064][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:09.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:09.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.073][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.075][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:09.077][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:09.078][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.079][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:09.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:09.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.085][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.090][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.094][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.099][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.104][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.109][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.114][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.118][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.123][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.128][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.133][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:09.134][self$createEntryFromContent] Accession numbers: 144071. biodb.TRACE[2025-08-09 16:04:09.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.139][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.144][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.149][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:09.150][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:09.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:09.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:09.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:09.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:09.161][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:09.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:09.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.167][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.172][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.177][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:09.178][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:09.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:09.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:09.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:09.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:09.190][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:09.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:09.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.196][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.201][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.205][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:09.207][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:09.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:09.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:09.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:09.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:09.218][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:09.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:09.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.224][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.229][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.234][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:09.235][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:09.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:09.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:09.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:09.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:09.246][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:09.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:09.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.252][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.266][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.272][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:09.274][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:09.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:09.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:09.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:09.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:09.285][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:09.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:09.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.291][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.296][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.301][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:09.302][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:09.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:09.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:09.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:09.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:09.313][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:09.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:09.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.319][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.324][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.328][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:09.329][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:09.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:09.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:09.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:09.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:09.340][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:09.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:09.343][private$loadEntries] Creating entries from ids [1]: "168650". biodb.DEBUG[2025-08-09 16:04:09.344][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:09.346][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:09.363][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml. biodb.DEBUG[2025-08-09 16:04:09.364][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:09.366][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:09.367][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:09.369][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:09.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:09.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:09.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:09.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:09.380][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:09.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:09.384][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.385][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.387][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.388][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.393][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.394][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:09.395][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:09.397][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.398][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.399][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:09.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:09.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.403][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.404][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:09.405][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:09.407][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.408][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:09.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:09.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.413][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.414][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:09.416][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:09.417][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.418][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:09.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:09.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.423][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.424][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:09.426][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:09.427][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.428][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:09.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:09.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.433][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.434][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:09.436][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:09.437][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.438][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.439][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:09.441][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.442][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.443][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.445][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:09.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.448][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.450][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.451][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.452][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.453][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.458][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.460][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:09.461][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:09.462][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.463][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:09.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:09.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.469][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.476][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:09.477][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:09.479][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.480][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.482][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:09.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:09.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.486][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.487][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:09.489][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:09.490][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.491][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:09.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:09.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.496][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.501][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.506][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.511][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.515][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.520][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.525][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.530][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.535][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.540][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.544][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:09.546][self$createEntryFromContent] Accession numbers: 168650. biodb.TRACE[2025-08-09 16:04:09.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.551][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.556][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.560][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:09.562][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:09.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:09.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:09.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:09.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:09.573][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:09.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:09.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.579][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.584][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.588][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:09.590][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:09.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:09.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:09.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:09.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:09.601][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:09.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:09.603][private$loadEntries] Creating entries from ids [1]: "169305". biodb.DEBUG[2025-08-09 16:04:09.604][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:09.606][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:09.625][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml. biodb.DEBUG[2025-08-09 16:04:09.627][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:09.628][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:09.630][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:09.632][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:09.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:09.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:09.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:09.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:09.643][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:09.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:09.647][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.649][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.650][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.651][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.656][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.658][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:09.659][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:09.660][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.661][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.663][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:09.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:09.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.667][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.668][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:09.669][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:09.670][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.671][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:09.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:09.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.677][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.678][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:09.680][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:09.687][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.688][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:09.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:09.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.695][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.696][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:09.698][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:09.699][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.700][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:09.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:09.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.705][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.707][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:09.708][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:09.709][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.710][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.712][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:09.714][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.715][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.716][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.717][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:09.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.721][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.722][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.724][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.725][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.726][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.731][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.732][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:09.734][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:09.735][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.736][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:09.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:09.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.741][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.743][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:09.744][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:09.745][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.746][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.748][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:09.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:09.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.751][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.753][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:09.754][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:09.755][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.756][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.758][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:09.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:09.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.761][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.766][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.771][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.776][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:09.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.781][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.786][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.790][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.795][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.800][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.805][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.810][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:09.811][self$createEntryFromContent] Accession numbers: 169305. biodb.TRACE[2025-08-09 16:04:09.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.816][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.821][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.826][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:09.827][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:09.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:09.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:09.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:09.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:09.839][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:09.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:09.841][private$loadEntries] Creating entries from ids [1]: "176869". biodb.DEBUG[2025-08-09 16:04:09.842][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:09.844][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:09.863][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml. biodb.DEBUG[2025-08-09 16:04:09.865][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:09.866][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:09.868][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:09.870][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:09.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:09.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:09.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:09.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:09.881][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:09.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:09.885][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.886][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.887][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.888][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:09.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:09.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.900][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.902][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:09.903][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:09.905][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.906][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.907][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:09.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:09.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.911][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.913][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:09.914][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:09.915][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.916][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:09.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:09.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.922][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.923][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:09.924][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:09.925][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.926][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:09.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:09.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.932][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.933][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:09.934][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:09.935][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.936][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:09.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:09.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.941][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.943][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:09.944][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:09.945][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.946][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.948][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:09.949][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.950][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.951][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.953][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:09.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:09.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.956][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.958][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.959][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.960][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.961][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:09.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.966][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.968][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:09.969][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:09.970][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.971][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:09.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:09.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.976][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.978][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:09.979][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:09.980][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.981][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.983][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:09.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:09.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.987][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.988][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:09.989][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:09.990][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.991][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:09.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:09.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:09.997][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:09.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.002][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.007][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.012][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.017][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.022][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.027][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.031][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.036][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.041][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.046][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:10.047][self$createEntryFromContent] Accession numbers: 176869. biodb.TRACE[2025-08-09 16:04:10.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.052][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.057][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.062][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:10.063][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:10.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:10.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:10.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:10.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:10.074][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:10.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:10.077][private$loadEntries] Creating entries from ids [1]: "185696". biodb.DEBUG[2025-08-09 16:04:10.078][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:10.080][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:10.105][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml. biodb.DEBUG[2025-08-09 16:04:10.107][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:10.109][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:10.111][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:10.113][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:10.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:10.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:10.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:10.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:10.125][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:10.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:10.129][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.130][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.131][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.132][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.137][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.138][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:10.140][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:10.141][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.142][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:10.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:10.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.147][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.148][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:10.150][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:10.151][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.152][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:10.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:10.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.157][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.158][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:10.160][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:10.161][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.162][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:10.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:10.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.167][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.168][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:10.169][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:10.171][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.172][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:10.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:10.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.177][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.178][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:10.179][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:10.180][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.182][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.183][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:10.184][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.185][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.187][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.188][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:10.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.192][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.193][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.194][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.195][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.196][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.201][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.203][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:10.204][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:10.205][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.206][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.208][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:10.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:10.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.211][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.213][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:10.214][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:10.215][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.216][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.218][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:10.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:10.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.221][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.223][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:10.224][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:10.225][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.226][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.228][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:10.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:10.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.231][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.236][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.241][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.246][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.250][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.255][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.260][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.265][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.270][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.275][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.280][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:10.281][self$createEntryFromContent] Accession numbers: 185696. biodb.TRACE[2025-08-09 16:04:10.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.291][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.297][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.303][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:10.304][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:10.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:10.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:10.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:10.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:10.315][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:10.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:10.317][private$loadEntries] Creating entries from ids [1]: "190762". biodb.DEBUG[2025-08-09 16:04:10.319][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:10.320][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:10.338][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml. biodb.DEBUG[2025-08-09 16:04:10.340][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:10.341][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:10.343][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:10.344][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:10.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:10.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:10.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:10.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:10.355][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:10.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:10.359][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.360][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.362][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.363][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.368][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.369][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:10.370][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:10.371][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.372][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:10.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:10.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.378][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.379][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:10.380][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:10.381][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.382][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:10.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:10.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.388][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.389][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:10.390][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:10.391][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.392][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:10.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:10.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.397][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.399][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:10.400][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:10.401][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.402][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:10.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:10.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.407][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.409][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:10.410][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:10.411][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.412][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.414][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:10.415][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.416][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.417][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.419][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:10.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.422][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.424][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.425][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.426][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.427][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.432][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.433][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:10.435][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:10.436][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.437][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.439][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:10.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:10.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.442][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.443][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:10.445][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:10.446][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.447][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.448][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:10.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:10.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.452][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.453][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:10.455][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:10.456][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.457][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:10.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:10.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.462][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.467][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.472][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.476][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.481][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.486][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.497][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.503][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.508][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.518][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:10.519][self$createEntryFromContent] Accession numbers: 190762. biodb.TRACE[2025-08-09 16:04:10.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.524][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.529][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.534][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:10.535][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:10.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:10.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:10.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:10.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:10.546][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:10.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:10.549][private$loadEntries] Creating entries from ids [1]: "193176". biodb.DEBUG[2025-08-09 16:04:10.550][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:10.552][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:10.570][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml. biodb.DEBUG[2025-08-09 16:04:10.572][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:10.573][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:10.575][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:10.577][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:10.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:10.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:10.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:10.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:10.588][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:10.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:10.591][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.593][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.594][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.595][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.600][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.601][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:10.603][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:10.604][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.605][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.606][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:10.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:10.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.610][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.611][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:10.613][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:10.614][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.615][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:10.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:10.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.620][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.621][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:10.623][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:10.624][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.625][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:10.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:10.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.630][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.631][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:10.633][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:10.634][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.635][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:10.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:10.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.640][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.641][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:10.643][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:10.644][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.645][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.646][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:10.648][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.649][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.650][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.651][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:10.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.655][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.656][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.658][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.659][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.660][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.665][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.666][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:10.668][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:10.669][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.670][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:10.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:10.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.675][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.677][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:10.678][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:10.679][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.680][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.682][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:10.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:10.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.685][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.687][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:10.688][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:10.689][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.690][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:10.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:10.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.695][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.713][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.720][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.726][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.731][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.736][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.741][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.746][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.751][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.755][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:10.757][self$createEntryFromContent] Accession numbers: 193176. biodb.TRACE[2025-08-09 16:04:10.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.762][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.766][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.771][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:10.772][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:10.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:10.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:10.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:10.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:10.784][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:10.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:10.787][private$loadEntries] Creating entries from ids [1]: "196395". biodb.DEBUG[2025-08-09 16:04:10.788][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:10.790][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:10.808][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml. biodb.DEBUG[2025-08-09 16:04:10.809][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:10.811][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:10.812][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:10.814][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:10.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:10.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:10.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:10.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:10.825][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:10.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:10.829][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.830][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.831][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.833][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.838][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.839][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:10.840][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:10.841][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.842][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.844][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:10.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:10.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.848][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.849][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:10.850][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:10.851][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.852][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.854][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:10.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:10.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.858][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.859][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:10.860][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:10.861][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.862][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:10.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:10.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.868][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.869][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:10.870][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:10.871][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.872][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:10.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:10.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.877][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.879][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:10.880][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:10.881][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.882][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.884][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:10.885][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.886][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.887][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.889][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:10.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.892][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.894][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.895][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.896][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.897][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:10.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.902][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.904][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:10.905][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:10.906][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.913][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:10.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:10.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.920][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.921][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:10.923][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:10.924][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.925][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.926][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:10.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:10.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.930][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.931][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:10.933][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:10.934][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.935][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:10.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:10.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.940][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.945][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.950][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.954][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:10.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.959][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.964][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.969][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.974][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.984][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:10.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:10.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.988][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:10.990][self$createEntryFromContent] Accession numbers: 196395. biodb.TRACE[2025-08-09 16:04:10.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.995][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:10.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:10.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:10.999][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:11.005][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.016][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.022][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.027][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.032][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:11.033][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:11.035][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.046][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.052][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.057][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.058][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.059][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:11.060][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:11.062][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:11.063][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.064][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.065][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.066][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.068][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.069][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.070][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.071][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.072][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.074][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.075][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.076][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.077][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.078][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.079][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.081][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:11.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.085][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.090][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.101][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.103][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799]. biodb.DEBUG[2025-08-09 16:04:11.105][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.117][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.123][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.128][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.129][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.130][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:11.131][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:11.132][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:11.134][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.135][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.136][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.137][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.138][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.140][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.141][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.142][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.143][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.144][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.145][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.147][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.148][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.149][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.150][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.151][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:11.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.156][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.161][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.166][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954]. biodb.DEBUG[2025-08-09 16:04:11.168][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.179][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.186][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.190][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.192][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.193][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:11.194][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:11.195][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:11.196][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.197][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.199][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.200][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.201][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.202][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.203][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.204][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.206][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.207][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.208][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.209][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.210][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.211][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.213][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.214][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:11.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.219][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.223][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.228][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.230][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612]. biodb.DEBUG[2025-08-09 16:04:11.231][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:11.232][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:11.259][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.270][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:11.275][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:11.277][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:11.282][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content. sched.DEBUG[2025-08-09 16:04:11.284][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:11.295][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.308][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.315][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.319][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.324][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:11.326][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.337][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.343][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.348][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.352][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:11.354][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.365][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.371][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.376][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.381][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:11.382][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.393][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.399][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.404][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.409][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:11.410][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:11.412][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.423][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.429][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.434][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.435][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.437][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:11.438][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:11.439][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:11.440][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.441][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.442][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.444][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.445][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.446][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.447][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.448][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.450][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.451][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.452][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.453][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.454][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.456][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.457][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.458][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:11.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.463][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.468][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.473][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.474][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014]. biodb.DEBUG[2025-08-09 16:04:11.476][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.493][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.500][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.507][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.509][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.510][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:11.512][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:11.514][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:11.515][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.516][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.518][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.519][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.520][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.521][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.523][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.524][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.525][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.526][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.527][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.528][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.530][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.531][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.532][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.533][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:11.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.538][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.543][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.547][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021]. biodb.DEBUG[2025-08-09 16:04:11.550][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.562][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.568][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.573][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.574][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.575][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:11.576][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:11.577][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:11.578][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.580][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.581][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.582][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.583][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.584][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.586][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.587][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.588][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.589][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.590][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.592][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.593][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.594][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.595][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.596][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:11.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.601][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.606][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.611][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382]. biodb.DEBUG[2025-08-09 16:04:11.613][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:11.614][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:11.617][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.628][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:11.632][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:11.635][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:11.639][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/4da83335ec00090f05f0a5128074d1f6.content. sched.DEBUG[2025-08-09 16:04:11.640][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:11.644][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.655][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.661][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.666][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.671][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:11.672][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.690][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.697][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.702][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:11.708][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.721][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.729][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.734][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.738][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:11.740][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.751][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.757][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.762][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.766][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:11.768][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.779][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.785][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.789][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.794][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:11.796][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.806][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.812][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.817][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.822][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:11.823][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.834][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.841][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.845][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:11.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.850][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:11.852][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:11.853][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.864][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.871][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.881][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.883][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.884][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:11.886][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:11.887][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:11.889][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.890][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.891][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.892][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.894][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.895][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.896][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.897][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.898][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.900][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.901][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.902][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.903][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.904][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.905][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.907][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:11.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.911][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.916][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.921][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.923][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530]. biodb.DEBUG[2025-08-09 16:04:11.924][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.935][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:11.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.941][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.946][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.947][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.948][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:11.949][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:11.950][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:11.952][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.953][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.954][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.955][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.956][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.958][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.959][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.960][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.961][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.962][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.963][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:11.965][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.966][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.967][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.968][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.969][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:11.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.974][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:11.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:11.984][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:11.985][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204]. biodb.DEBUG[2025-08-09 16:04:11.987][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:11.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:11.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:11.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:11.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:11.998][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:11.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.009][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.010][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.011][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:12.012][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:12.013][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:12.014][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.016][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.017][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.018][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.019][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.021][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.022][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.023][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.024][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.025][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.027][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.028][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.029][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.030][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.031][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.032][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:12.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.037][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.042][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.047][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.049][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793]. biodb.DEBUG[2025-08-09 16:04:12.050][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:12.051][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:12.053][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.071][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:12.076][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:12.079][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:12.081][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content. sched.DEBUG[2025-08-09 16:04:12.083][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:12.085][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.096][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.103][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.108][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.112][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:12.114][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.125][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.131][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.136][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.140][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:04:12.142][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:12.145][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:12.148][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/8a1fe476d9f07138803c04b6da6259b3.content. sched.DEBUG[2025-08-09 16:04:12.149][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:12.152][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.163][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.169][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.174][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.179][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:12.180][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.191][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.197][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.202][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.206][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:12.208][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.219][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.225][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.230][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.235][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:12.236][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:12.238][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.249][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.256][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.267][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.269][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.270][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:12.271][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:12.273][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:12.274][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.275][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.276][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.278][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.279][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.280][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.281][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.282][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.284][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.285][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.286][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.287][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.288][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.289][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.291][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.292][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:12.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.297][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.301][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.306][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.308][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836]. biodb.DEBUG[2025-08-09 16:04:12.309][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.320][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.326][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.331][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.332][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.333][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:12.334][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:12.336][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:12.337][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.338][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.339][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.340][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.342][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.343][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.344][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.345][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.346][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.347][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.349][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.350][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.351][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.352][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.353][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.355][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:12.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.359][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.364][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.369][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.370][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837]. biodb.DEBUG[2025-08-09 16:04:12.372][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.383][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.389][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.394][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.395][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.396][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:12.397][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:12.398][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:12.399][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.401][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.402][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.403][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.404][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.405][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.407][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.408][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.409][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.410][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.411][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.413][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.414][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.415][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.416][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.417][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:12.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.422][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.427][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.432][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.433][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205]. biodb.DEBUG[2025-08-09 16:04:12.435][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:12.436][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:12.470][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.481][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:12.485][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:12.488][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:12.490][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content. sched.DEBUG[2025-08-09 16:04:12.491][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:12.494][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.505][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.511][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.516][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.521][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:04:12.523][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:12.526][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:12.528][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content. sched.DEBUG[2025-08-09 16:04:12.529][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:12.532][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.543][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.554][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.559][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:12.560][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.571][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.577][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.582][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.586][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:12.588][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:12.590][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.601][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.607][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.612][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.613][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.614][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:12.615][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:12.616][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:12.617][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.619][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.620][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.621][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.622][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.623][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.625][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.626][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.627][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.628][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.629][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.631][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.632][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.633][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.634][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.635][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:12.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.647][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.653][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.658][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.660][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288]. biodb.DEBUG[2025-08-09 16:04:12.661][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.672][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.678][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.683][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.684][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.685][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:12.686][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:12.687][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:12.689][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.690][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.691][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.692][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.693][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.695][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.696][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.697][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.698][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.699][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.701][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.702][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.703][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.704][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.705][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.706][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:12.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.716][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.724][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440]. biodb.DEBUG[2025-08-09 16:04:12.725][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.736][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.742][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.747][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.748][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.750][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:12.751][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:12.752][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:12.753][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.754][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.755][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.757][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.758][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.759][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.760][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.761][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.762][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.764][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.765][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:12.766][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.767][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.768][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.769][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.771][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:12.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.776][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.781][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.786][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.788][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892]. biodb.DEBUG[2025-08-09 16:04:12.789][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:12.790][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:12.792][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.803][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:12.808][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:12.811][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:12.813][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content. sched.DEBUG[2025-08-09 16:04:12.814][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:12.817][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.834][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.842][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.847][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.852][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:12.853][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.864][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.871][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.875][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.880][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:04:12.882][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:12.885][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:12.888][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content. sched.DEBUG[2025-08-09 16:04:12.889][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:12.892][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.903][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.909][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.914][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.919][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:12.920][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.931][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.937][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.941][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.946][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:12.947][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.958][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.964][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.969][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:12.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.974][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:12.975][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:12.977][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:12.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:12.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:12.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:12.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:12.988][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:12.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:12.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.994][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:12.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:12.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:12.999][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.000][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.002][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:13.003][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:13.004][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:13.005][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.006][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.008][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.009][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.010][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.011][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.012][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.014][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.015][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.016][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.017][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.018][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.025][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.027][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.028][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.034][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:13.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.040][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.045][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.050][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:04:13.053][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.064][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.071][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.078][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.080][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.081][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:13.083][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:13.084][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:13.086][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.087][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.088][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.090][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.091][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.092][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.093][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.094][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.096][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.097][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.098][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.099][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.100][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.102][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.103][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.104][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:13.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.109][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.113][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.118][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.120][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587]. biodb.DEBUG[2025-08-09 16:04:13.121][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.132][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.138][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.143][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.144][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.145][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:13.146][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:13.147][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:13.149][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.150][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.151][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.152][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.153][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.155][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.156][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.157][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.158][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.159][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.161][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.162][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.163][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.164][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.165][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.166][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:13.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.171][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.176][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.181][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.182][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804]. biodb.DEBUG[2025-08-09 16:04:13.184][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:13.185][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:13.187][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.198][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:13.202][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:13.205][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:13.208][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content. sched.DEBUG[2025-08-09 16:04:13.209][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:13.211][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.230][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.237][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.242][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.246][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:13.248][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.259][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.265][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.270][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.274][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:13.276][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.287][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.293][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.297][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.302][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:13.304][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.315][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.321][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.325][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.330][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:13.331][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.342][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.349][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.353][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.358][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:13.359][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.370][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.377][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.381][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.386][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:13.388][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.399][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.405][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.563][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.568][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:13.569][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.580][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.586][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.591][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.596][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:04:13.598][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:13.601][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:13.603][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content. sched.DEBUG[2025-08-09 16:04:13.604][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:13.607][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.618][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.624][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.629][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.633][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:13.635][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.646][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.652][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.656][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.661][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:13.662][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.673][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.679][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.684][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.689][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:13.690][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:13.692][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.703][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.713][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.715][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.716][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:13.717][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:13.718][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:13.720][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.721][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.722][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.724][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.725][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.726][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.727][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.729][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.730][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.731][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.732][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.733][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.735][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.736][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.737][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.738][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:13.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.743][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.748][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.753][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.754][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799]. biodb.DEBUG[2025-08-09 16:04:13.755][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.768][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.774][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.780][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.781][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.782][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:13.784][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:13.785][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:13.786][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.788][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.789][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.790][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.792][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.793][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.794][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.796][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.797][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.799][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.800][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.801][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.803][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.804][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.805][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.807][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:13.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.812][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.818][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.823][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954]. biodb.DEBUG[2025-08-09 16:04:13.826][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.838][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.846][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.851][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.853][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.854][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:13.855][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:13.856][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:13.858][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.859][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.860][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.862][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.863][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.864][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.866][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.867][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.868][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.870][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.871][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:13.872][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.874][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.875][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.876][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.878][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:13.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.883][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.889][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:13.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.894][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.896][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612]. biodb.DEBUG[2025-08-09 16:04:13.897][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:13.899][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:13.929][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.941][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:13.950][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:13.952][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:13.955][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content. sched.DEBUG[2025-08-09 16:04:13.956][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:13.959][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.970][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:13.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.976][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.980][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:13.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:13.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:13.985][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:13.986][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:13.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:13.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:13.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:13.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:13.997][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:13.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.003][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.008][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.013][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.014][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.025][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.031][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.036][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.040][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.042][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.052][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.058][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.063][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.068][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.069][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.080][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.086][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.090][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.095][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.096][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.107][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.113][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.118][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.123][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.124][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:14.126][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.137][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.143][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.147][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.149][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.150][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:14.151][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:14.152][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:14.153][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.154][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.155][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.157][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.158][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.159][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.160][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.161][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.162][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.164][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.165][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.166][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.167][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.168][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.170][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.171][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:14.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.175][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.180][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.185][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.186][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440]. biodb.DEBUG[2025-08-09 16:04:14.188][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.199][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.205][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.210][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.211][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.212][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:14.213][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:14.214][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:14.215][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.216][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.218][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.219][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.220][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.221][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.222][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.224][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.225][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.226][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.227][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.228][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.230][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.231][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.232][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.233][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:14.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.238][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.242][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.247][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.249][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243]. biodb.DEBUG[2025-08-09 16:04:14.250][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.261][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.267][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.272][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.273][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.274][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:14.275][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:14.277][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:14.278][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.279][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.280][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.281][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.282][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.284][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.285][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.286][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.287][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.288][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.290][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.291][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.292][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.293][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.294][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.295][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:14.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.300][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.314][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.316][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144]. biodb.DEBUG[2025-08-09 16:04:14.317][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:14.318][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:14.321][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.332][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:14.336][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:14.338][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:14.343][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/a1f794ee7474001c459ff6d20307d75d.content. sched.DEBUG[2025-08-09 16:04:14.344][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:14.349][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.360][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.366][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.370][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.375][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.376][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.387][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.393][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.398][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.403][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.404][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.415][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.421][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.426][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.430][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.432][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:14.433][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.444][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.450][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.455][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.456][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.457][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:14.459][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:14.460][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:14.461][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.462][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.463][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.464][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.465][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.467][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.468][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.469][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.470][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.471][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.473][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.474][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.475][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.476][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.477][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.478][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:14.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.483][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.488][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.493][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.494][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:04:14.496][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.507][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.517][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.519][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.520][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:14.521][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:14.522][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:14.523][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.524][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.526][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.527][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.528][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.529][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.530][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.532][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.533][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.534][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.535][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.536][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.537][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.539][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.540][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.541][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:14.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.546][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.550][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.555][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.557][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587]. biodb.DEBUG[2025-08-09 16:04:14.558][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.569][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.575][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.580][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.581][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.582][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:14.583][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:14.584][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:14.586][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.587][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.588][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.589][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.590][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.592][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.593][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.594][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.595][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.596][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.597][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:14.599][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.600][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.601][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.602][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.603][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:14.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.608][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.613][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:14.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.618][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.619][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804]. biodb.DEBUG[2025-08-09 16:04:14.620][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:14.621][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:14.624][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.635][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:14.639][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:14.642][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:14.645][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content. sched.DEBUG[2025-08-09 16:04:14.647][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:14.650][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.661][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.672][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.676][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.681][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.682][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.693][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.699][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.704][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.710][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.721][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.730][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.735][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.740][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.741][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.752][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.758][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.763][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.767][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.769][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.779][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.785][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.790][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.794][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.796][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.807][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.812][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.817][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.822][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.823][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.834][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.840][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.845][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.850][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.851][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.862][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.868][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.872][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.877][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.878][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.889][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.895][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.905][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.906][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.917][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.923][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.928][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.933][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.934][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.945][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.951][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.956][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.961][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.962][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:14.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:14.973][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:14.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:14.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.984][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:14.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:14.988][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:14.990][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:14.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:14.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:14.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.001][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.007][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.012][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.016][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.018][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.028][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.039][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.044][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.048][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.050][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.060][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.066][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.071][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.075][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.077][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.087][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.093][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.098][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.102][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.104][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.115][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.121][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.125][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.130][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.131][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.142][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.148][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.153][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.157][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.158][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.169][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.175][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.180][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.185][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.186][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.197][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.203][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.208][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.212][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.214][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.224][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.231][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.235][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.240][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.241][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.252][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.258][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.263][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.268][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.269][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.280][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.286][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.291][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.295][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.297][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.308][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.314][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.318][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.323][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.324][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.336][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.342][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.346][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.351][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.352][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.363][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.369][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.374][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.379][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.380][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.391][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.402][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.406][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.411][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.412][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.423][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.429][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.433][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:15.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.438][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.439][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:15.441][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.452][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.458][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.463][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.464][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:15.465][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:15.466][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:15.467][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:15.468][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:15.470][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.471][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.472][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.473][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.474][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.475][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.476][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.478][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.479][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:15.480][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:15.481][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.482][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.483][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.485][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.486][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:15.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.490][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.495][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.500][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.501][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799]. biodb.DEBUG[2025-08-09 16:04:15.503][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.513][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.519][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.524][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.525][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:15.526][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:15.527][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:15.529][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:15.530][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:15.531][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.532][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.533][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.534][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.535][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.537][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.538][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.539][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.540][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:15.541][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:15.542][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.544][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.545][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.546][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.547][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:15.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.552][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.557][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.562][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.563][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954]. biodb.DEBUG[2025-08-09 16:04:15.564][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.575][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.582][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.586][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.587][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:15.589][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:15.590][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:15.591][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:15.592][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:15.593][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.594][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.596][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.597][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.598][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.599][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.600][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.601][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.603][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:15.604][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:15.605][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.606][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.607][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.608][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.610][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:15.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.614][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.619][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:15.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.624][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.626][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612]. biodb.DEBUG[2025-08-09 16:04:15.627][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:15.628][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.TRACE[2025-08-09 16:04:15.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.656][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.661][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.666][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.670][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.675][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.680][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.685][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.690][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.695][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.700][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.704][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.713][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.725][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:15.731][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:15.736][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:15.756][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content. sched.DEBUG[2025-08-09 16:04:15.758][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:15.764][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.775][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.786][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.791][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.796][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.797][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.808][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.814][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.819][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.824][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.825][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.836][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.842][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.847][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.851][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.853][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.864][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.870][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.874][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.879][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.880][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.891][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.897][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.902][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:15.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.907][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:15.908][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.919][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:15.921][private$loadEntries] Creating entries from ids [1]: "9442". biodb.DEBUG[2025-08-09 16:04:15.923][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:15.924][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:15.944][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml. biodb.DEBUG[2025-08-09 16:04:15.945][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:15.947][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:15.949][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:15.950][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:15.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:15.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:15.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:15.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:15.961][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:15.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:15.966][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:15.967][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:15.968][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.969][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:15.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:15.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.974][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.976][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:15.977][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:15.978][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.979][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.981][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:15.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:15.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.984][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.985][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:15.987][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:15.988][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.989][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:15.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:15.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.994][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:15.995][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:15.997][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:15.998][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:15.999][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:16.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:16.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.005][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:16.006][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:16.008][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.009][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:16.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:16.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.014][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.015][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.016][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.017][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.018][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.020][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.023][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.025][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:16.026][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:16.027][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.028][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.030][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:16.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:16.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.033][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.035][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.036][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.037][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.038][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.043][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.044][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:16.046][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:16.047][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.048][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:16.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:16.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.053][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.054][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:16.056][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:16.057][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.058][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:16.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:16.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.063][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.064][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:16.066][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:16.067][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.068][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:16.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:16.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.073][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.078][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.082][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.087][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.092][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.097][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.101][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.106][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.111][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.116][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.121][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:16.122][self$createEntryFromContent] Accession numbers: 9442. biodb.TRACE[2025-08-09 16:04:16.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.131][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.136][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:16.137][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:16.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:16.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:16.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:16.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:16.149][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:16.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:16.151][private$loadEntries] Creating entries from ids [1]: "34764". biodb.DEBUG[2025-08-09 16:04:16.152][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:16.159][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:16.178][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml. biodb.DEBUG[2025-08-09 16:04:16.179][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:16.181][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:16.182][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:16.184][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:16.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:16.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:16.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:16.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:16.195][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:16.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:16.199][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.200][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.201][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.202][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.207][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.209][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:16.210][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:16.211][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.212][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.214][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:16.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:16.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.217][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.218][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:16.220][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:16.221][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.222][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:16.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:16.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.227][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.228][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:16.230][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:16.231][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.232][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:16.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:16.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.237][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.238][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:16.239][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:16.240][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.242][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:16.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:16.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.246][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.248][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.249][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.250][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.251][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.253][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.256][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.257][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:16.259][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:16.260][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.261][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.262][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:16.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:16.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.266][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.267][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.268][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.270][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.271][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.276][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.277][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:16.278][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:16.279][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.280][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:16.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:16.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.286][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.287][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:16.288][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:16.289][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.290][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.292][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:16.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:16.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.295][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.297][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:16.298][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:16.299][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.300][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:16.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:16.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.305][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.310][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.315][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.319][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.324][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.329][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.334][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.338][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.343][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.348][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.353][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:16.354][self$createEntryFromContent] Accession numbers: 34764. biodb.TRACE[2025-08-09 16:04:16.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.359][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.364][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.368][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:16.370][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:16.372][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:16.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:16.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:16.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:16.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:16.382][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:16.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:16.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.389][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.393][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.394][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:16.396][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:16.397][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:16.398][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:16.399][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:16.400][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.401][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.403][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.404][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.405][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.406][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.407][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.408][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.410][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:16.411][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:16.412][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.413][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.414][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.415][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.417][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:16.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.421][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.426][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.431][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.432][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014]. biodb.DEBUG[2025-08-09 16:04:16.434][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:16.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:16.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:16.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:16.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:16.445][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:16.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:16.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.451][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.456][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.457][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:16.458][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:16.459][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:16.460][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:16.461][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:16.463][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.464][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.465][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.466][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.467][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.468][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.470][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.471][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.472][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:16.473][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:16.474][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.476][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.477][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.478][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.479][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:16.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.484][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.488][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.493][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.495][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799]. biodb.DEBUG[2025-08-09 16:04:16.496][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:16.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:16.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:16.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:16.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:16.507][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:16.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:16.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.518][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.519][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:16.520][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:16.526][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:16.527][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:16.528][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:16.529][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.531][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.532][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.533][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.534][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.535][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.536][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.537][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.539][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:16.540][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:16.541][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.542][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.543][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.544][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.546][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:16.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.550][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.555][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.560][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.561][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764]. biodb.DEBUG[2025-08-09 16:04:16.562][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:16.564][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:16.566][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:16.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:16.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:16.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:16.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:16.577][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:16.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:16.581][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:16.584][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:16.604][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content. sched.DEBUG[2025-08-09 16:04:16.605][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:16.612][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:16.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:16.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:16.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:16.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:16.623][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:16.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:16.626][private$loadEntries] Creating entries from ids [1]: "2535". biodb.DEBUG[2025-08-09 16:04:16.627][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:16.629][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:16.648][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml. biodb.DEBUG[2025-08-09 16:04:16.650][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:16.651][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:16.653][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:16.654][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:16.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:16.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:16.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:16.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:16.666][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:16.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:16.669][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.670][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.672][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.673][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.678][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.679][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:16.680][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:16.681][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.682][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.684][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:16.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:16.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.687][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.689][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:16.690][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:16.691][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.692][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:16.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:16.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.697][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.699][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:16.700][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:16.701][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.702][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:16.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:16.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.708][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:16.710][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:16.711][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.712][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:16.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:16.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.717][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.718][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.719][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.721][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.722][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.723][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.727][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.729][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:16.730][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:16.731][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.732][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.734][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:16.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:16.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.737][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.739][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.740][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.741][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.742][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.747][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.748][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:16.750][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:16.751][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.752][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:16.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:16.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.757][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.758][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:16.760][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:16.761][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.762][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.763][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:16.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:16.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.767][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.768][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:16.769][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:16.770][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.772][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:16.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:16.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.777][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.781][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.786][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.791][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:16.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.796][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.800][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.805][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.810][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.815][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.820][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.824][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:16.825][self$createEntryFromContent] Accession numbers: 2535. biodb.TRACE[2025-08-09 16:04:16.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.830][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.835][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.840][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:16.841][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:16.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:16.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:16.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:16.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:16.852][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:16.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:16.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.858][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.863][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:16.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.868][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:16.869][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:16.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:16.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:16.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:16.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:16.880][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:16.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:16.882][private$loadEntries] Creating entries from ids [1]: "5525". biodb.DEBUG[2025-08-09 16:04:16.883][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:16.885][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:16.905][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml. biodb.DEBUG[2025-08-09 16:04:16.907][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:16.908][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:16.910][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:16.912][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:16.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:16.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:16.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:16.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:16.923][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:16.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:16.926][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.928][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.934][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.935][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:16.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:16.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.940][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.941][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:16.943][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:16.944][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.945][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.946][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:16.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:16.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.950][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.951][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:16.952][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:16.954][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.955][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:16.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:16.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.960][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.961][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:16.962][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:16.963][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.964][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:16.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:16.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.969][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.971][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:16.972][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:16.973][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.974][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:16.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:16.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.980][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.982][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.983][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.984][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.985][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:16.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.989][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.992][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:16.994][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:16.995][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:16.996][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:16.997][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:16.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:17.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.001][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.002][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.003][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.005][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.006][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.011][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.012][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:17.013][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:17.014][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.015][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:17.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:17.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.021][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.022][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:17.023][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:17.024][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.025][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.027][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:17.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:17.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.030][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.032][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:17.033][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:17.034][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.035][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:17.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:17.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.040][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.045][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.050][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.054][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.059][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.064][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.069][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.073][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.079][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.083][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.088][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:17.089][self$createEntryFromContent] Accession numbers: 5525. biodb.TRACE[2025-08-09 16:04:17.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.094][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.104][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:17.105][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:17.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:17.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:17.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:17.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:17.116][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:17.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:17.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.122][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.132][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:17.133][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:17.135][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:17.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:17.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:17.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:17.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:17.146][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:17.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:17.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.152][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.157][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.158][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:17.159][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:17.161][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:17.162][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:17.163][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:17.164][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.165][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.166][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.168][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.169][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.170][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.171][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.172][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.173][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:17.175][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:17.176][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.177][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.178][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.180][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.181][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:17.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.186][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.190][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.195][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.197][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535]. biodb.DEBUG[2025-08-09 16:04:17.198][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:17.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:17.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:17.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:17.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:17.209][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:17.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:17.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.215][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.220][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.221][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:17.222][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:17.223][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:17.224][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:17.226][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:17.227][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.228][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.229][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.230][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.232][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.233][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.234][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.235][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.236][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:17.237][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:17.239][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.240][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.241][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.242][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.243][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:17.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.248][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.253][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.257][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:04:17.260][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:17.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:17.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:17.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:17.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:17.271][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:17.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:17.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.278][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.287][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.288][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:17.289][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:17.290][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:17.291][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:17.293][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:17.294][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.295][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.296][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.297][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.298][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.300][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.301][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.302][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.303][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:17.304][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:17.305][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.307][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.308][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.309][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.310][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:17.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.315][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.319][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.324][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587]. biodb.DEBUG[2025-08-09 16:04:17.327][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:17.328][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:17.330][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:17.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:17.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:17.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:17.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:17.341][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:17.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:17.345][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:17.348][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:17.365][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/633ffa8aab56d260ba52bc860645ac89.content. sched.DEBUG[2025-08-09 16:04:17.367][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:17.371][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:17.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:17.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:17.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:17.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:17.382][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:17.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:17.384][private$loadEntries] Creating entries from ids [1]: "31303". biodb.DEBUG[2025-08-09 16:04:17.386][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:17.387][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:17.406][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml. biodb.DEBUG[2025-08-09 16:04:17.407][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:17.409][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:17.410][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:17.412][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:17.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:17.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:17.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:17.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:17.423][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:17.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:17.427][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.428][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.429][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.430][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.435][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.437][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:17.438][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:17.439][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.440][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.442][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:17.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:17.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.445][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.447][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:17.448][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:17.449][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.450][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:17.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:17.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.455][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.456][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:17.458][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:17.459][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.460][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:17.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:17.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.465][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.466][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:17.468][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:17.469][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.470][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:17.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:17.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.475][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.476][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:17.477][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:17.479][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.480][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.481][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:17.483][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:17.484][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.485][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.486][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:17.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:17.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.490][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.491][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.493][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.494][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.495][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.500][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.501][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:17.502][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:17.504][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.505][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:17.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:17.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.510][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.512][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:17.513][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:17.514][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.515][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.516][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:17.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:17.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.520][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.521][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:17.523][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:17.524][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.525][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:17.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:17.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.530][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.535][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.540][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.544][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.549][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.554][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.559][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.563][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.568][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.573][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.578][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:17.579][self$createEntryFromContent] Accession numbers: 31303. biodb.TRACE[2025-08-09 16:04:17.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.584][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.589][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.593][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:17.595][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:17.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:17.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:17.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:17.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:17.606][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:17.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:17.608][private$loadEntries] Creating entries from ids [1]: "37118". biodb.DEBUG[2025-08-09 16:04:17.609][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:17.611][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:17.629][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml. biodb.DEBUG[2025-08-09 16:04:17.631][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:17.632][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:17.634][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:17.635][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:17.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:17.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:17.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:17.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:17.646][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:17.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:17.650][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.651][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.652][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.654][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.659][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.660][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:17.661][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:17.662][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.663][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.665][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:17.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:17.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.668][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.670][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:17.671][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:17.672][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.673][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:17.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:17.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.678][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.680][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:17.681][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:17.682][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.683][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:17.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:17.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.693][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.695][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:17.696][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:17.697][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.698][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:17.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:17.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.703][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.704][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:17.706][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:17.707][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.708][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.709][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:17.710][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:17.712][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.713][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.714][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:17.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:17.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.718][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.719][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.720][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.721][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.722][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.729][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.730][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:17.731][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:17.732][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.733][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:17.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:17.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.739][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.740][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:17.741][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:17.742][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.743][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.745][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:17.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:17.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.748][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.750][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:17.751][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:17.752][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.753][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:17.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:17.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.758][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.763][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.768][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.773][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.777][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.782][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.787][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.791][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.796][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.801][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.806][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:17.807][self$createEntryFromContent] Accession numbers: 37118. biodb.TRACE[2025-08-09 16:04:17.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.812][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.816][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.821][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:17.822][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:17.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:17.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:17.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:17.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:17.833][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:17.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:17.836][private$loadEntries] Creating entries from ids [1]: "39424". biodb.DEBUG[2025-08-09 16:04:17.837][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:17.839][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:17.857][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml. biodb.DEBUG[2025-08-09 16:04:17.859][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:17.861][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:17.862][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:17.864][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:17.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:17.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:17.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:17.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:17.876][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:17.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:17.879][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.880][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.882][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.883][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.888][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.889][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:17.890][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:17.891][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.892][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.894][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:17.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:17.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.897][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.899][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:17.900][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:17.901][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.902][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:17.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:17.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.907][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.909][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:17.910][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:17.911][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.912][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:17.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:17.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.917][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.918][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:17.920][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:17.921][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.922][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:17.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:17.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.927][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.928][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:17.929][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:17.931][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.932][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.933][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:17.934][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:17.936][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.937][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.938][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:17.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:17.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.943][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.944][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.945][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.946][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:17.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.951][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.953][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:17.954][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:17.955][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.956][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:17.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:17.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.963][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:17.964][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:17.965][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.966][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:17.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:17.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.971][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.973][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:17.974][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:17.975][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.976][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:17.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:17.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.981][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.986][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.991][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:17.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:17.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:17.996][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:17.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:17.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.001][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.005][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.010][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.015][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.020][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.025][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.030][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:18.031][self$createEntryFromContent] Accession numbers: 39424. biodb.TRACE[2025-08-09 16:04:18.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.036][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.040][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.045][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:18.046][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.062][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:18.065][private$loadEntries] Creating entries from ids [1]: "81767". biodb.DEBUG[2025-08-09 16:04:18.066][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:18.068][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:18.088][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml. biodb.DEBUG[2025-08-09 16:04:18.089][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:18.091][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:18.092][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:18.094][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.105][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.109][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.110][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.111][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.112][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.119][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:18.120][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:18.121][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.122][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.124][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:18.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:18.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.128][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:18.130][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:18.131][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.132][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:18.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:18.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.137][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.138][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:18.139][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:18.141][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.142][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:18.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:18.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.147][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.148][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:18.149][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:18.150][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.151][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:18.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:18.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.157][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.158][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:18.159][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:18.160][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.161][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.163][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:18.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:18.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.166][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.168][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:18.169][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:18.170][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.171][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.173][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:18.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:18.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.176][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.177][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.179][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.180][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.181][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.186][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.187][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:18.189][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:18.190][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.191][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:18.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:18.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.196][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.197][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:18.199][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:18.200][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.201][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.202][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:18.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:18.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.206][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.207][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:18.208][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:18.209][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.211][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:18.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:18.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.216][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.221][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.225][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.230][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.235][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.240][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.245][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.249][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.254][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.259][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:18.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:18.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.264][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:18.265][self$createEntryFromContent] Accession numbers: 81767. biodb.TRACE[2025-08-09 16:04:18.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.270][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.275][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.280][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:18.281][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.292][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.298][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.303][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.308][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:18.309][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:18.311][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.322][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.328][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.333][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.334][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.335][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:18.336][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:18.337][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:18.339][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.340][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.341][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.342][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.343][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.344][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.346][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.347][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.348][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.349][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.350][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.352][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.353][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.354][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.355][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.356][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:18.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.361][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.366][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.371][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.372][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303]. biodb.DEBUG[2025-08-09 16:04:18.373][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.385][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.391][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.396][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.397][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.398][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:18.399][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:18.400][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:18.401][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.403][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.404][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.405][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.406][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.407][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.409][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.410][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.411][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.412][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.413][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.414][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.416][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.417][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.418][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.419][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:18.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.429][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.434][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.438][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.440][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767]. biodb.DEBUG[2025-08-09 16:04:18.441][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.452][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.458][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.463][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.464][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.465][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:18.466][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:18.468][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:18.469][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.470][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.471][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.472][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.473][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.475][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.476][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.477][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.478][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.479][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.481][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.482][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.483][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.484][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.485][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.486][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:18.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.491][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.496][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.501][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378]. biodb.DEBUG[2025-08-09 16:04:18.503][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:18.505][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:18.531][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.541][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:18.546][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:18.548][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:18.550][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/2e865a03592d6effdf242ff63104f35a.content. sched.DEBUG[2025-08-09 16:04:18.552][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. sched.DEBUG[2025-08-09 16:04:18.555][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:18.558][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:18.561][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/f0c73645ca32490f91d503a462d812b2.content. sched.DEBUG[2025-08-09 16:04:18.562][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:18.564][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.575][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.582][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.586][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.591][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:18.593][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.604][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.610][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.615][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.620][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:18.621][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.632][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.638][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.643][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.648][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:18.649][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:18.651][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.662][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.668][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.673][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.674][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.675][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:18.676][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:18.677][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:18.679][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.680][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.681][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.682][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.683][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.684][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.686][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.687][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.688][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.689][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.690][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.692][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.693][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.695][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.696][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.697][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:18.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.702][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.711][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.713][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648]. biodb.DEBUG[2025-08-09 16:04:18.714][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.725][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.734][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.739][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.740][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.741][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:18.742][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:18.743][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:18.745][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.746][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.747][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.748][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.749][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.751][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.752][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.753][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.754][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.755][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.757][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.758][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.759][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.760][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.761][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.762][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:18.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.767][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.772][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.777][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440]. biodb.DEBUG[2025-08-09 16:04:18.780][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.796][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.803][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.808][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.809][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.810][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:18.811][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:18.812][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:18.813][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.815][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.816][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.817][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.818][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.819][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.821][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.822][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.823][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.824][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.825][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.826][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.828][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.829][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.830][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.831][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:18.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.836][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.841][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.845][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.847][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447]. biodb.DEBUG[2025-08-09 16:04:18.848][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:18.849][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:18.852][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.863][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:18.867][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:18.869][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:18.872][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content. sched.DEBUG[2025-08-09 16:04:18.873][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:18.876][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.887][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.893][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.898][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.903][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:18.904][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.915][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.921][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.926][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.931][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:18.932][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.943][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.949][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.954][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:18.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.959][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:18.960][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:18.962][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:18.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:18.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:18.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:18.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:18.973][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:18.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:18.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.984][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.985][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.987][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:18.988][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:18.989][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:18.990][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:18.991][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.993][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.994][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:18.995][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:18.996][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.998][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:18.999][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.001][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.002][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.003][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.004][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.005][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.007][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.008][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.009][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:19.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.014][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.019][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.023][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.025][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:04:19.026][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.037][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:19.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.044][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.048][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.050][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.051][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:19.052][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:19.053][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:19.054][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.056][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.057][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.058][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.059][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.060][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.062][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.063][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.064][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.065][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.066][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.067][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.069][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.070][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.071][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.072][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:19.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.077][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.082][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.087][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.088][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601]. biodb.DEBUG[2025-08-09 16:04:19.090][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.101][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:19.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.107][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.112][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.113][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.114][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:19.115][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:19.116][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:19.118][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.119][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.120][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.121][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.122][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.124][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.125][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.126][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.127][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.128][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.130][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.131][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.132][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.133][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.134][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.136][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:19.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.140][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.145][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.155][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.157][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147]. biodb.DEBUG[2025-08-09 16:04:19.158][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:19.159][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:19.161][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.172][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:19.176][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:19.179][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:19.183][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content. sched.DEBUG[2025-08-09 16:04:19.184][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:19.187][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.198][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:19.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.204][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.209][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.214][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:19.215][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.226][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:19.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.232][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.237][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.242][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:19.243][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.254][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:19.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.260][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.265][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.270][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:19.271][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:19.273][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.284][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:19.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.290][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.295][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.296][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.297][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:19.298][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:19.299][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:19.301][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.302][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.303][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.304][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.305][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.307][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.308][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.309][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.310][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.311][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.312][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.314][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.315][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.316][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.317][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.318][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:19.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.323][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.328][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.333][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.334][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636]. biodb.DEBUG[2025-08-09 16:04:19.336][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.347][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:19.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.353][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.358][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.359][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.360][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:19.361][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:19.362][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:19.363][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.365][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.366][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.367][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.368][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.369][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.371][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.372][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.373][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.374][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.375][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.377][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.378][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.379][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.380][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.381][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:19.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.386][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.391][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.396][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199]. biodb.DEBUG[2025-08-09 16:04:19.398][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.410][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:19.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.416][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.420][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.422][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.423][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:19.424][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:19.425][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:19.426][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.427][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.429][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.430][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.431][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.432][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.433][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.435][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.436][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.437][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.438][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:19.439][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.441][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.442][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.443][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.444][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:19.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.449][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.454][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.458][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648]. biodb.DEBUG[2025-08-09 16:04:19.461][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:19.462][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:19.489][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.499][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:19.503][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:19.506][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:19.524][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content. sched.DEBUG[2025-08-09 16:04:19.526][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:19.534][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.545][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:19.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.551][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.556][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.561][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:19.562][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.573][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.584][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.589][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:19.590][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.601][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:19.603][private$loadEntries] Creating entries from ids [1]: "17813". biodb.DEBUG[2025-08-09 16:04:19.604][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:19.606][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:19.624][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml. biodb.DEBUG[2025-08-09 16:04:19.625][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:19.627][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:19.628][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:19.630][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.641][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:19.645][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:19.646][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:19.647][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.648][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:19.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:19.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.653][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.655][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:19.656][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:19.657][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.658][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:19.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:19.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.663][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.664][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:19.666][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:19.667][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.668][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:19.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:19.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.673][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.674][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:19.676][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:19.677][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.678][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:19.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.683][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.684][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:19.685][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:19.687][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.688][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:19.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:19.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.693][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.694][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:19.695][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:19.696][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.698][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.699][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:19.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:19.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.703][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.704][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:19.705][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:19.706][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.708][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.709][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:19.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:19.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.713][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.714][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.715][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.716][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.718][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.723][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.724][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:19.725][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:19.726][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.727][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:19.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:19.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.734][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.735][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:19.736][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:19.737][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.739][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:19.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:19.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.744][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.745][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:19.746][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:19.747][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.748][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:19.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:19.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.754][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.758][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.763][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:19.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:19.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.768][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.773][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:19.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:19.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.778][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:19.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:19.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.782][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:19.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:19.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.787][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:19.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:19.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.792][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:19.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:19.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.797][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:19.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:19.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.802][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:19.803][self$createEntryFromContent] Accession numbers: 17813. biodb.TRACE[2025-08-09 16:04:19.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.808][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.813][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.818][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:19.819][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.830][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:19.833][private$loadEntries] Creating entries from ids [1]: "30109". biodb.DEBUG[2025-08-09 16:04:19.834][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:19.836][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:19.854][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml. biodb.DEBUG[2025-08-09 16:04:19.856][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:19.857][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:19.859][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:19.861][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:19.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:19.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:19.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:19.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:19.872][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:19.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:19.876][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:19.877][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:19.878][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.879][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:19.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:19.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.884][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.886][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:19.887][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:19.888][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.889][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.891][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:19.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:19.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.894][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.896][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:19.897][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:19.898][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.899][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:19.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:19.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.904][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.906][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:19.907][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:19.908][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.909][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:19.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:19.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.914][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.921][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:19.922][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:19.923][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.924][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:19.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:19.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.929][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.931][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:19.932][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:19.933][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.934][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.936][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:19.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:19.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.939][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.941][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:19.942][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:19.943][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.944][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.945][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:19.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:19.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.949][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.950][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.952][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.953][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.954][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:19.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.959][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.960][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:19.961][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:19.963][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.964][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:19.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:19.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.969][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.970][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:19.971][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:19.973][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.974][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.975][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:19.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:19.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.980][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:19.981][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:19.982][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.984][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:19.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.989][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.993][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:19.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:19.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:19.998][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.003][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.008][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.013][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.017][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.022][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.027][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.032][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.037][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:20.038][self$createEntryFromContent] Accession numbers: 30109. biodb.TRACE[2025-08-09 16:04:20.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.043][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.047][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.052][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:20.053][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:20.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:20.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:20.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:20.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:20.064][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:20.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:20.067][private$loadEntries] Creating entries from ids [1]: "33275". biodb.DEBUG[2025-08-09 16:04:20.068][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:20.070][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:20.090][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml. biodb.DEBUG[2025-08-09 16:04:20.092][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:20.094][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:20.096][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:20.097][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:20.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:20.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:20.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:20.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:20.109][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:20.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:20.112][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.114][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.115][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.116][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.121][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.122][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:20.123][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:20.125][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.126][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:20.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:20.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.131][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.132][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:20.133][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:20.135][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.136][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:20.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:20.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.141][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.142][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:20.143][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:20.144][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.146][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:20.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:20.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.151][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.152][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:20.153][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:20.154][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.156][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:20.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.161][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.162][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:20.163][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:20.164][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.165][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.167][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:20.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:20.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.171][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.172][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:20.173][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:20.174][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.175][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.177][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:20.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:20.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.180][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.182][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.183][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.184][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.185][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.191][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.192][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:20.193][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:20.194][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.195][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:20.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:20.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.201][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.202][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:20.203][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:20.204][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.206][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.207][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:20.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:20.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.211][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.212][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:20.213][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:20.214][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.216][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:20.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:20.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.221][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.226][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.230][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.235][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.240][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.245][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.250][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.255][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.260][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.264][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.269][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:20.270][self$createEntryFromContent] Accession numbers: 33275. biodb.TRACE[2025-08-09 16:04:20.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.275][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.280][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.290][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:20.291][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:20.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:20.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:20.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:20.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:20.303][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:20.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:20.305][private$loadEntries] Creating entries from ids [1]: "33277". biodb.DEBUG[2025-08-09 16:04:20.306][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:20.308][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:20.328][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml. biodb.DEBUG[2025-08-09 16:04:20.330][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:20.331][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:20.333][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:20.335][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:20.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:20.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:20.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:20.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:20.346][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:20.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:20.350][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.351][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.352][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.353][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.358][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.360][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:20.361][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:20.362][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.363][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.365][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:20.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:20.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.368][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.369][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:20.372][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:20.374][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.375][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:20.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:20.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.381][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.383][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:20.384][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:20.385][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.386][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:20.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:20.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.391][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.392][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:20.394][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:20.395][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.396][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:20.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:20.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.401][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.402][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:20.404][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:20.405][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.406][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.407][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:20.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.411][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.412][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:20.413][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:20.414][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.416][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.417][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:20.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:20.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.421][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.422][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.423][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.424][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.425][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.430][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.432][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:20.433][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:20.434][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.435][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:20.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:20.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.440][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.442][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:20.443][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:20.444][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.445][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.447][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:20.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:20.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.450][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.452][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:20.453][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:20.454][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.455][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:20.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:20.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.460][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.465][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.470][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.475][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.480][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.484][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.489][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.494][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.499][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.504][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.508][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:20.509][self$createEntryFromContent] Accession numbers: 33277. biodb.TRACE[2025-08-09 16:04:20.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.514][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.519][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.524][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:20.525][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:20.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:20.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:20.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:20.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:20.536][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:20.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:20.539][private$loadEntries] Creating entries from ids [1]: "52421". biodb.DEBUG[2025-08-09 16:04:20.540][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:20.542][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:20.560][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml. biodb.DEBUG[2025-08-09 16:04:20.561][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:20.563][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:20.565][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:20.566][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:20.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:20.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:20.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:20.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:20.578][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:20.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:20.581][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.583][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.584][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.585][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.590][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.591][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:20.592][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:20.594][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.595][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.596][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:20.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:20.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.600][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.601][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:20.602][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:20.603][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.605][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.606][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:20.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:20.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.610][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.611][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:20.612][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:20.613][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.614][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:20.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:20.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.619][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.621][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:20.622][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:20.623][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.624][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:20.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.629][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.631][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:20.632][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:20.633][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.634][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.636][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:20.637][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:20.638][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.639][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.641][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:20.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:20.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.644][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.646][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.647][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.648][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.649][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.654][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.655][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:20.657][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:20.658][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.659][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:20.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:20.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.664][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.665][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:20.667][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:20.668][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.669][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.670][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:20.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:20.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.674][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.680][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:20.681][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:20.683][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.684][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:20.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:20.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.689][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.694][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.698][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.703][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.708][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.712][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.717][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.722][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.727][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.732][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:20.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:20.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.739][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:20.740][self$createEntryFromContent] Accession numbers: 52421. biodb.TRACE[2025-08-09 16:04:20.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.745][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.750][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.755][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:20.756][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:20.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:20.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:20.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:20.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:20.767][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:20.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:20.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.773][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.777][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:20.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.782][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:20.783][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:20.785][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:20.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:20.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:20.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:20.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:20.796][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:20.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:20.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.802][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.807][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.808][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:20.809][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:20.810][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:20.811][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:20.813][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:20.814][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.815][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.816][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.817][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.818][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.820][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.821][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.822][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.823][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:20.824][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:20.825][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.827][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.828][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.829][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.830][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:20.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.835][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.840][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.845][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.846][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648]. biodb.DEBUG[2025-08-09 16:04:20.847][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:20.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:20.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:20.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:20.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:20.858][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:20.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:20.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.865][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.869][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.871][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:20.872][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:20.873][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:20.874][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:20.875][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:20.876][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.878][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.879][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.880][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.881][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.882][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.883][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.884][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.886][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:20.887][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:20.888][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.889][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.890][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.892][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.893][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:20.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.898][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.902][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.907][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440]. biodb.DEBUG[2025-08-09 16:04:20.910][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:20.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:20.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:20.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:20.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:20.921][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:20.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:20.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.927][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.932][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.933][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:20.934][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:20.936][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:20.937][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:20.938][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:20.939][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.940][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.941][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.943][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.944][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.945][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.946][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.947][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.949][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:20.950][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:20.951][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.952][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.953][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.954][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.956][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:20.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.965][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:20.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:20.970][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:20.971][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447]. biodb.DEBUG[2025-08-09 16:04:20.973][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:20.974][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:20.976][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:20.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:20.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:20.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:20.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:20.987][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:20.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:20.991][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:20.994][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:21.015][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/3d37e3be2f5c6d64498effb7934e924b.content. sched.DEBUG[2025-08-09 16:04:21.016][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:21.024][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:21.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:21.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:21.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:21.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:21.035][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:21.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:21.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.041][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.051][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.056][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:21.058][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:21.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:21.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:21.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:21.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:21.069][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:21.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:21.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.075][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.079][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.084][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:21.085][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:21.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:21.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:21.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:21.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:21.096][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:21.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:21.099][private$loadEntries] Creating entries from ids [1]: "65567". biodb.DEBUG[2025-08-09 16:04:21.100][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:21.102][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:21.122][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml. biodb.DEBUG[2025-08-09 16:04:21.123][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:21.125][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:21.126][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:21.128][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:21.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:21.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:21.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:21.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:21.139][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:21.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:21.143][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.144][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.145][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.146][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.151][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.153][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:21.154][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:21.155][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.156][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.158][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:21.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:21.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.162][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.163][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:21.164][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:21.165][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.166][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:21.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:21.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.171][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.173][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:21.174][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:21.175][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.176][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:21.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:21.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.181][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.183][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:21.184][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:21.185][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.186][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:21.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:21.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.191][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.192][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:21.194][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:21.195][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.196][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.197][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:21.199][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:21.200][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.201][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.202][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:21.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:21.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.206][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.207][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.209][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.210][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.211][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.216][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.217][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:21.219][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:21.220][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.221][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:21.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:21.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.226][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.227][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:21.229][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:21.230][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.231][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:21.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:21.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.236][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.238][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:21.239][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:21.240][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.241][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:21.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:21.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.246][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.251][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.256][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.261][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.266][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.271][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.275][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.280][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.285][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.290][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.295][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:21.296][self$createEntryFromContent] Accession numbers: 65567. biodb.TRACE[2025-08-09 16:04:21.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.301][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.306][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.311][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:21.313][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:21.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:21.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:21.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:21.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:21.324][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:21.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:21.328][private$loadEntries] Creating entries from ids [1]: "65576". biodb.DEBUG[2025-08-09 16:04:21.330][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:21.332][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:21.352][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml. biodb.DEBUG[2025-08-09 16:04:21.354][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:21.355][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:21.357][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:21.358][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:21.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:21.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:21.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:21.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:21.370][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:21.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:21.373][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.375][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.376][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.377][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.382][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.383][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:21.385][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:21.386][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.387][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:21.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:21.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.393][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:21.395][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:21.396][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.397][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:21.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:21.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.402][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.403][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:21.405][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:21.406][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.407][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:21.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:21.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.412][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.413][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:21.415][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:21.416][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.417][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:21.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:21.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.422][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.423][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:21.425][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:21.426][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.427][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.428][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:21.430][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:21.431][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.432][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.433][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:21.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:21.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.437][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.438][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.440][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.450][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.452][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.458][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.459][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:21.460][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:21.461][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.462][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:21.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:21.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.468][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.469][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:21.470][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:21.471][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.472][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:21.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:21.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.477][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.479][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:21.480][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:21.481][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.482][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:21.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:21.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.487][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.492][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.497][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.506][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.511][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.516][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.520][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.525][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.530][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.535][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:21.536][self$createEntryFromContent] Accession numbers: 65576. biodb.TRACE[2025-08-09 16:04:21.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.541][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.546][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.550][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:21.552][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:21.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:21.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:21.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:21.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:21.562][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:21.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:21.565][private$loadEntries] Creating entries from ids [1]: "66352". biodb.DEBUG[2025-08-09 16:04:21.566][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:21.568][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:21.586][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml. biodb.DEBUG[2025-08-09 16:04:21.588][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:21.589][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:21.590][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:21.592][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:21.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:21.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:21.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:21.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:21.603][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:21.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:21.607][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.608][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.609][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.610][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.615][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.617][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:21.618][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:21.619][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.620][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.622][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:21.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:21.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.625][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.627][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:21.628][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:21.629][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.630][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:21.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:21.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.635][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.637][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:21.638][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:21.639][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.640][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:21.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:21.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.645][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.647][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:21.648][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:21.649][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.650][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:21.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:21.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.655][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.656][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:21.658][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:21.659][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.660][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.661][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:21.663][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:21.664][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.665][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.666][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:21.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:21.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.670][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.671][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.672][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.674][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.675][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.680][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.681][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:21.682][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:21.683][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.685][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:21.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:21.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.690][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.691][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:21.692][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:21.693][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.694][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.696][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:21.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:21.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.699][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.701][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:21.702][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:21.703][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.704][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:21.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:21.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.714][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.719][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.724][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.728][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.734][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.738][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.743][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.748][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.753][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.757][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:21.759][self$createEntryFromContent] Accession numbers: 66352. biodb.TRACE[2025-08-09 16:04:21.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.764][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.768][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.773][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:21.774][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:21.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:21.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:21.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:21.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:21.785][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:21.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:21.788][private$loadEntries] Creating entries from ids [1]: "67567". biodb.DEBUG[2025-08-09 16:04:21.789][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:21.791][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:21.808][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml. biodb.DEBUG[2025-08-09 16:04:21.810][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:21.811][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:21.813][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:21.815][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:21.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:21.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:21.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:21.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:21.826][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:21.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:21.829][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.836][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.837][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.839][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.844][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.845][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:21.846][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:21.847][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.848][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.850][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:21.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:21.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.853][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.855][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:21.856][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:21.857][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.858][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:21.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:21.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.863][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.864][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:21.866][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:21.867][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.868][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:21.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:21.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.873][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.874][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:21.875][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:21.877][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.878][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:21.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:21.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.883][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.884][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:21.885][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:21.886][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.888][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.889][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:21.890][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:21.891][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.892][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.894][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:21.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:21.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.897][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.899][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.900][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.901][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.902][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.907][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.908][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:21.910][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:21.911][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.912][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:21.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:21.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.917][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.918][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:21.920][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:21.921][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.922][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.923][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:21.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:21.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.927][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.928][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:21.929][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:21.930][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.931][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:21.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:21.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.936][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.941][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.946][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.951][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:21.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.955][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.960][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.965][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.971][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.976][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.981][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:21.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:21.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.985][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:21.987][self$createEntryFromContent] Accession numbers: 67567. biodb.TRACE[2025-08-09 16:04:21.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.991][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:21.996][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:21.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:21.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.001][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:22.002][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:22.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:22.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:22.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:22.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:22.013][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:22.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:22.016][private$loadEntries] Creating entries from ids [1]: "67693". biodb.DEBUG[2025-08-09 16:04:22.017][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:22.019][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:22.038][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml. biodb.DEBUG[2025-08-09 16:04:22.039][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:22.041][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:22.042][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:22.044][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:22.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:22.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:22.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:22.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:22.055][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:22.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:22.059][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.060][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.061][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.063][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.068][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.069][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:22.070][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:22.071][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.072][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.074][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:22.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:22.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.077][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.079][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:22.080][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:22.081][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.082][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.084][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:22.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:22.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.087][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.089][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:22.090][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:22.091][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.092][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:22.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:22.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.097][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.098][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:22.100][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:22.101][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.102][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:22.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:22.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.107][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.108][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:22.110][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:22.111][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.112][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.113][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:22.115][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:22.116][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.117][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.118][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:22.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:22.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.122][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.123][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.124][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.125][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.127][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.132][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.133][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:22.134][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:22.135][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.136][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:22.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:22.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.142][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.143][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:22.144][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:22.145][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.146][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.148][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:22.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:22.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.151][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.153][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:22.154][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:22.155][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.156][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:22.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:22.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.161][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.166][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.171][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.176][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.180][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.185][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.190][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.195][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.205][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.210][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.214][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:22.216][self$createEntryFromContent] Accession numbers: 67693. biodb.TRACE[2025-08-09 16:04:22.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.221][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.225][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.230][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:22.231][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:22.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:22.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:22.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:22.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:22.242][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:22.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:22.244][private$loadEntries] Creating entries from ids [1]: "67700". biodb.DEBUG[2025-08-09 16:04:22.246][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:22.247][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:22.265][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml. biodb.DEBUG[2025-08-09 16:04:22.267][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:22.268][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:22.270][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:22.272][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:22.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:22.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:22.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:22.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:22.283][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:22.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:22.286][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.288][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.289][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.290][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.295][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.296][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:22.297][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:22.298][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.300][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.301][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:22.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:22.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.305][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.306][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:22.307][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:22.308][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.309][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:22.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:22.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.314][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.316][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:22.317][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:22.318][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.319][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:22.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:22.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.324][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.325][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:22.327][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:22.328][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.329][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:22.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:22.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.334][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.335][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:22.336][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:22.337][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.339][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.340][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:22.341][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:22.342][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.344][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.345][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:22.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:22.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.348][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.350][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.351][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.352][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.353][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.358][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.360][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:22.361][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:22.362][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.363][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:22.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:22.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.368][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.370][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:22.371][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:22.372][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.373][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.375][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:22.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:22.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.378][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.380][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:22.381][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:22.382][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.383][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:22.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:22.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.388][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.393][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.398][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.403][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.407][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.412][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.417][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.422][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.427][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.432][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.437][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:22.438][self$createEntryFromContent] Accession numbers: 67700. biodb.TRACE[2025-08-09 16:04:22.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.443][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.447][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.452][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:22.453][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:22.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:22.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:22.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:22.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:22.464][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:22.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:22.467][private$loadEntries] Creating entries from ids [1]: "67701". biodb.DEBUG[2025-08-09 16:04:22.468][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:22.470][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:22.489][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml. biodb.DEBUG[2025-08-09 16:04:22.490][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:22.492][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:22.493][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:22.495][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:22.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:22.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:22.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:22.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:22.506][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:22.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:22.510][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.511][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.512][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.514][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.519][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.520][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:22.521][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:22.522][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.524][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.525][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:22.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:22.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.529][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.530][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:22.531][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:22.533][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.534][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:22.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:22.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.539][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.540][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:22.542][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:22.543][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.544][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:22.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:22.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.549][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.550][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:22.552][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:22.553][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.554][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:22.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:22.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.559][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.560][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:22.562][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:22.563][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.564][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.565][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:22.567][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:22.568][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.569][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.570][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:22.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:22.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.574][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.575][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.577][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.578][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.579][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.590][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.591][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:22.593][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:22.594][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.595][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:22.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:22.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.600][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.601][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:22.603][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:22.604][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.605][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.606][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:22.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:22.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.610][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.611][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:22.612][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:22.614][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.615][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:22.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:22.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.620][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.624][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.629][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.634][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.639][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.643][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.648][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.653][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.658][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.663][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.667][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:22.668][self$createEntryFromContent] Accession numbers: 67701. biodb.TRACE[2025-08-09 16:04:22.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.673][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.678][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.683][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:22.684][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:22.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:22.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:22.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:22.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:22.695][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:22.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:22.697][private$loadEntries] Creating entries from ids [1]: "67705". biodb.DEBUG[2025-08-09 16:04:22.699][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:22.700][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:22.719][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml. biodb.DEBUG[2025-08-09 16:04:22.720][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:22.722][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:22.723][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:22.725][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:22.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:22.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:22.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:22.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:22.737][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:22.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:22.741][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.742][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.743][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.744][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.749][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.751][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:22.752][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:22.753][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.754][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.756][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:22.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.759][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.761][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:22.762][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:22.763][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.764][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:22.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:22.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.769][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.771][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:22.772][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:22.773][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.774][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:22.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:22.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.779][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.781][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:22.782][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:22.783][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.784][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:22.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:22.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.789][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.791][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:22.792][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:22.793][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.794][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.796][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:22.797][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:22.798][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.799][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.801][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:22.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:22.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.806][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.807][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.808][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.809][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.814][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.816][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:22.817][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:22.818][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.819][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:22.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:22.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.824][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.826][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:22.827][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:22.828][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.829][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.831][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:22.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:22.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.834][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.836][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:22.837][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:22.838][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.839][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:22.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:22.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.844][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.849][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.854][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.859][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:22.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.864][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.868][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.873][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.878][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.883][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.888][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.892][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:22.894][self$createEntryFromContent] Accession numbers: 67705. biodb.TRACE[2025-08-09 16:04:22.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.899][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.903][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:22.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.908][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:22.909][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:22.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:22.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:22.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:22.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:22.920][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:22.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:22.923][private$loadEntries] Creating entries from ids [1]: "75265". biodb.DEBUG[2025-08-09 16:04:22.924][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:22.926][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:22.943][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml. biodb.DEBUG[2025-08-09 16:04:22.945][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:22.947][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:22.948][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:22.950][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:22.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:22.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:22.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:22.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:22.961][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:22.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:22.965][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.966][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.967][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.968][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:22.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:22.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.980][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:22.982][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:22.983][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.984][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.985][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:22.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:22.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.989][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.990][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:22.992][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:22.993][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.994][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:22.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:22.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:22.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:22.999][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.000][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:23.001][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:23.003][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.004][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.005][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:23.006][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:23.007][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.009][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.010][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:23.011][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:23.012][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.013][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.015][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:23.016][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:23.017][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.018][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:23.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:23.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.023][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.025][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.026][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.027][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.028][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.033][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.034][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:23.036][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:23.037][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.038][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:23.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:23.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.043][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.044][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:23.045][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:23.047][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.048][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.049][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:23.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:23.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.053][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.054][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:23.055][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:23.056][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.057][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:23.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:23.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.062][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.067][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.072][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.077][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.081][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.086][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.091][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.096][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.101][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.105][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.110][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:23.111][self$createEntryFromContent] Accession numbers: 75265. biodb.TRACE[2025-08-09 16:04:23.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.116][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.121][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.126][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:23.127][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:23.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:23.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:23.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:23.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:23.138][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:23.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:23.140][private$loadEntries] Creating entries from ids [1]: "77370". biodb.DEBUG[2025-08-09 16:04:23.142][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:23.143][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:23.161][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml. biodb.DEBUG[2025-08-09 16:04:23.162][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:23.164][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:23.165][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:23.167][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:23.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:23.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:23.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:23.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:23.178][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:23.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:23.182][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.184][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.185][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.186][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.191][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.192][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:23.194][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:23.195][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.196][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.197][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:23.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:23.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.201][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.202][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:23.203][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:23.205][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.206][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:23.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:23.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.211][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.212][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:23.213][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:23.215][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.216][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.217][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:23.218][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:23.220][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.221][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.222][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:23.224][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:23.225][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.226][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.227][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:23.229][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:23.230][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.231][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.232][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:23.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:23.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.236][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.237][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.239][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.240][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.241][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.246][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.247][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:23.249][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:23.250][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.251][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:23.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:23.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.256][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.257][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:23.259][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:23.260][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.261][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.262][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:23.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:23.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.266][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.267][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:23.269][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:23.270][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.271][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.272][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:23.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:23.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.276][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.281][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.286][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.290][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.295][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.300][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.305][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.309][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.314][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.319][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.324][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:23.325][self$createEntryFromContent] Accession numbers: 77370. biodb.TRACE[2025-08-09 16:04:23.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.330][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.340][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.346][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:23.348][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:23.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:23.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:23.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:23.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:23.364][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:23.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:23.366][private$loadEntries] Creating entries from ids [1]: "79074". biodb.DEBUG[2025-08-09 16:04:23.368][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:23.369][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:23.388][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml. biodb.DEBUG[2025-08-09 16:04:23.390][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:23.391][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:23.393][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:23.395][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:23.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:23.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:23.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:23.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:23.406][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:23.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:23.410][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.411][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.412][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.413][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.418][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.420][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:23.421][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:23.422][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.423][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.425][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:23.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:23.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.428][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.430][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:23.431][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:23.432][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.433][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:23.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:23.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.438][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.440][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:23.441][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:23.442][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.443][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:23.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:23.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.448][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.449][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:23.451][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:23.452][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.453][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:23.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:23.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.458][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.459][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:23.461][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:23.462][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.463][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.464][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:23.466][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:23.467][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.468][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.469][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:23.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:23.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.473][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.474][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.476][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.477][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.478][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.483][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.484][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:23.486][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:23.487][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.488][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:23.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:23.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.493][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.494][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:23.496][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:23.497][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.498][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.499][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:23.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:23.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.503][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.504][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:23.506][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:23.507][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.508][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:23.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:23.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.518][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.523][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.528][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.533][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.537][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.542][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.547][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.552][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.557][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.562][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:23.563][self$createEntryFromContent] Accession numbers: 79074. biodb.TRACE[2025-08-09 16:04:23.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.568][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.573][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.578][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:23.579][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:23.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:23.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:23.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:23.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:23.590][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:23.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:23.593][private$loadEntries] Creating entries from ids [1]: "79302". biodb.DEBUG[2025-08-09 16:04:23.594][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:23.596][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:23.615][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml. biodb.DEBUG[2025-08-09 16:04:23.617][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:23.618][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:23.620][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:23.621][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:23.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:23.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:23.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:23.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:23.633][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:23.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:23.636][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.638][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.639][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.640][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.645][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.646][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:23.648][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:23.649][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.650][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.651][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:23.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:23.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.655][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.656][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:23.658][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:23.659][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.660][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:23.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:23.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.665][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.666][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:23.668][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:23.669][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.670][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:23.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:23.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.675][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.676][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:23.678][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:23.679][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.680][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:23.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:23.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.685][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.686][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:23.688][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:23.689][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.690][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.691][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:23.693][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:23.694][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.695][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:23.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:23.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.700][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.701][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.703][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.704][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.705][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.710][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.711][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:23.713][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:23.714][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.715][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:23.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:23.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.720][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.721][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:23.723][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:23.724][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.725][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.726][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:23.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:23.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.730][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.738][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:23.740][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:23.741][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.742][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.744][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:23.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:23.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.747][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.752][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.757][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.762][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.767][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.771][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.776][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.781][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.786][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.791][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.795][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:23.796][self$createEntryFromContent] Accession numbers: 79302. biodb.TRACE[2025-08-09 16:04:23.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.801][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.806][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.811][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:23.812][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:23.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:23.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:23.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:23.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:23.823][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:23.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:23.826][private$loadEntries] Creating entries from ids [1]: "84164". biodb.DEBUG[2025-08-09 16:04:23.827][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:23.829][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:23.848][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml. biodb.DEBUG[2025-08-09 16:04:23.850][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:23.851][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:23.853][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:23.855][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:23.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:23.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:23.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:23.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:23.866][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:23.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:23.870][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.871][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.872][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.873][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.878][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.880][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:23.881][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:23.882][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.883][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.884][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:23.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:23.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.888][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.889][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:23.891][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:23.892][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.893][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:23.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:23.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.898][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.899][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:23.900][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:23.901][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.903][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:23.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:23.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.908][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.909][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:23.910][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:23.911][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.912][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:23.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:23.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.917][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.919][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:23.920][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:23.921][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.922][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.924][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:23.925][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:23.926][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.927][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.929][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:23.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:23.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.932][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.934][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.935][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.936][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.937][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:23.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.944][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:23.945][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:23.946][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.947][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.949][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:23.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:23.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.952][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.954][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:23.955][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:23.956][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.957][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.959][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:23.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:23.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.963][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:23.965][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:23.966][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.967][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:23.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:23.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.972][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.977][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.982][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.986][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:23.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.991][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:23.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:23.996][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:23.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:23.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.001][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.006][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.011][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.015][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.020][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:24.021][self$createEntryFromContent] Accession numbers: 84164. biodb.TRACE[2025-08-09 16:04:24.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.026][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.031][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.036][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:24.037][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:24.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:24.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:24.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:24.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:24.048][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:24.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:24.051][private$loadEntries] Creating entries from ids [1]: "132314". biodb.DEBUG[2025-08-09 16:04:24.052][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:24.054][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:24.073][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml. biodb.DEBUG[2025-08-09 16:04:24.074][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:24.076][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:24.077][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:24.079][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:24.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:24.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:24.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:24.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:24.090][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:24.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:24.094][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.095][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.096][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.097][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.102][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.104][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:24.105][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:24.106][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.107][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.109][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:24.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:24.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.112][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.113][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:24.115][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:24.116][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.117][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:24.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:24.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.128][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.129][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:24.130][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:24.131][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.133][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:24.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:24.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.138][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.139][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:24.140][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:24.141][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.142][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:24.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:24.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.147][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.149][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:24.150][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:24.151][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.152][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.154][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:24.155][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:24.156][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.157][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.158][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:24.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:24.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.162][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.163][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.164][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.166][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.167][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.172][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.173][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:24.174][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:24.175][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.176][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:24.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:24.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.181][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.183][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:24.184][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:24.185][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.186][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.188][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:24.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:24.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.191][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.192][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:24.194][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:24.195][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.196][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:24.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:24.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.201][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.206][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.210][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.215][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.220][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.224][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.229][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.234][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.238][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.243][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.248][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:24.249][self$createEntryFromContent] Accession numbers: 132314. biodb.TRACE[2025-08-09 16:04:24.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.254][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.258][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.263][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:24.264][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:24.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:24.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:24.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:24.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:24.275][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:24.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:24.278][private$loadEntries] Creating entries from ids [1]: "132338". biodb.DEBUG[2025-08-09 16:04:24.279][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:24.281][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:24.299][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml. biodb.DEBUG[2025-08-09 16:04:24.300][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:24.302][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:24.303][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:24.305][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:24.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:24.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:24.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:24.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:24.316][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:24.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:24.320][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.321][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.322][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.323][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.329][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.330][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:24.331][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:24.332][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.333][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.335][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:24.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:24.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.338][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.340][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:24.341][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:24.342][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.343][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:24.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:24.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.348][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.349][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:24.351][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:24.352][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.353][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:24.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:24.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.358][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.359][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:24.361][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:24.362][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.363][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:24.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:24.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.368][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.369][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:24.370][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:24.372][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.373][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.374][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:24.375][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:24.377][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.378][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.379][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:24.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:24.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.383][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.384][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.385][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.386][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.387][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.392][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.394][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:24.395][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:24.396][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.397][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:24.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:24.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.402][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.403][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:24.405][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:24.406][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.407][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.408][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:24.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:24.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.412][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.413][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:24.414][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:24.416][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.417][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:24.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:24.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.422][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.427][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.431][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.436][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.441][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.445][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.450][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.455][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.460][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.464][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.469][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:24.470][self$createEntryFromContent] Accession numbers: 132338. biodb.TRACE[2025-08-09 16:04:24.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.475][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.485][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.491][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:24.492][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:24.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:24.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:24.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:24.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:24.503][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:24.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:24.505][private$loadEntries] Creating entries from ids [1]: "139019". biodb.DEBUG[2025-08-09 16:04:24.506][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:24.508][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:24.527][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml. biodb.DEBUG[2025-08-09 16:04:24.529][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:24.530][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:24.532][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:24.534][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:24.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:24.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:24.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:24.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:24.544][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:24.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:24.548][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.549][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.551][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.552][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.557][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.558][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:24.559][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:24.560][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.561][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.563][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:24.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.566][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.568][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:24.569][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:24.570][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.571][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:24.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:24.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.576][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.577][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:24.578][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:24.580][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.581][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:24.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:24.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.586][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.587][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:24.588][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:24.589][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.590][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:24.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:24.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.595][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.597][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:24.598][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:24.599][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.600][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.601][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:24.603][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:24.604][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.605][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.606][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:24.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:24.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.610][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.611][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.612][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.613][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.614][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.619][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.621][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:24.622][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:24.623][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.624][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:24.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:24.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.629][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.630][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:24.632][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:24.633][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.634][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:24.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:24.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.639][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.640][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:24.641][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:24.642][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.643][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:24.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:24.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.648][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.653][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.658][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.663][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.668][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.672][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.677][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.682][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.687][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.691][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.696][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:24.697][self$createEntryFromContent] Accession numbers: 139019. biodb.TRACE[2025-08-09 16:04:24.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.702][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.712][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:24.713][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:24.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:24.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:24.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:24.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:24.724][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:24.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:24.726][private$loadEntries] Creating entries from ids [1]: "139367". biodb.DEBUG[2025-08-09 16:04:24.727][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:24.729][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:24.749][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml. biodb.DEBUG[2025-08-09 16:04:24.750][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:24.752][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:24.754][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:24.755][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:24.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:24.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:24.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:24.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:24.766][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:24.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:24.770][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.771][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.773][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.774][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.779][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.780][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:24.781][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:24.783][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.784][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.785][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:24.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:24.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.789][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.790][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:24.791][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:24.793][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.794][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.795][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:24.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:24.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.799][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.800][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:24.801][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:24.803][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.804][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:24.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:24.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.810][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:24.811][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:24.813][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.814][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:24.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:24.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.819][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.820][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:24.821][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:24.823][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.824][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.825][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:24.826][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:24.828][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.829][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.830][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:24.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:24.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.834][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.835][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.836][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.838][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.839][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.844][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.845][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:24.846][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:24.848][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.849][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:24.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:24.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.854][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.855][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:24.857][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:24.858][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.859][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.860][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:24.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:24.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.869][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.871][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:24.873][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:24.874][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.875][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:24.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:24.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.880][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.885][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.890][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.894][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:24.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.899][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.904][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.909][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.913][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.918][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.923][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:24.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:24.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.928][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:24.929][self$createEntryFromContent] Accession numbers: 139367. biodb.TRACE[2025-08-09 16:04:24.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.934][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.939][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:24.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:24.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:24.943][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:24.945][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:24.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:24.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:24.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:24.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:24.956][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:24.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:24.958][private$loadEntries] Creating entries from ids [1]: "145029". biodb.DEBUG[2025-08-09 16:04:24.959][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:24.961][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:24.980][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml. biodb.DEBUG[2025-08-09 16:04:24.981][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:24.983][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:24.984][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:24.986][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:24.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:24.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:24.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:24.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:24.997][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:24.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:25.001][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.002][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.003][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.004][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.009][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.011][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:25.012][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:25.013][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.014][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.016][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:25.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:25.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.020][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.022][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:25.023][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:25.024][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.025][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:25.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:25.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.030][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.032][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:25.033][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:25.034][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.035][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:25.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:25.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.040][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.042][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:25.043][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:25.044][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.045][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:25.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:25.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.050][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.052][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:25.053][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:25.054][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.055][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.057][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:25.058][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:25.059][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.060][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.062][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:25.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:25.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.065][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.067][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.068][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.069][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.070][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.076][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.078][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:25.080][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:25.081][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.083][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:25.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:25.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.088][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.089][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:25.090][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:25.092][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.093][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.094][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:25.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:25.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.098][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.099][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:25.100][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:25.101][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.103][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:25.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:25.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.108][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.113][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.118][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.122][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.132][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.137][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.142][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.147][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.151][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.156][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:25.158][self$createEntryFromContent] Accession numbers: 145029. biodb.TRACE[2025-08-09 16:04:25.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.162][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.167][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.172][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:25.173][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:25.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:25.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:25.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:25.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:25.184][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:25.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:25.187][private$loadEntries] Creating entries from ids [1]: "173077". biodb.DEBUG[2025-08-09 16:04:25.188][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:25.190][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:25.209][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml. biodb.DEBUG[2025-08-09 16:04:25.210][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:25.212][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:25.213][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:25.215][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:25.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:25.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:25.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:25.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:25.226][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:25.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:25.230][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.232][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.233][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.234][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.239][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.240][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:25.242][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:25.243][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.244][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.246][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:25.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:25.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.249][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.251][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:25.252][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:25.253][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.254][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:25.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:25.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.265][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.267][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:25.268][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:25.269][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.270][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:25.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:25.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.275][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.277][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:25.278][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:25.279][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.280][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:25.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:25.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.285][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.287][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:25.288][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:25.289][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.290][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.292][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:25.293][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:25.294][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.295][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.297][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:25.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:25.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.300][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.302][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.303][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.304][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.305][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.310][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.311][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:25.313][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:25.314][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.315][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:25.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:25.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.320][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.322][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:25.323][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:25.324][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.325][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.327][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:25.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:25.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.330][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.332][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:25.333][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:25.334][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.335][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:25.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:25.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.340][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.345][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.350][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.355][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.359][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.364][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.369][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.374][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.379][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.383][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:25.389][self$createEntryFromContent] Accession numbers: 173077. biodb.TRACE[2025-08-09 16:04:25.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.394][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.399][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.404][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:25.405][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:25.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:25.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:25.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:25.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:25.416][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:25.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:25.418][private$loadEntries] Creating entries from ids [1]: "365445". biodb.DEBUG[2025-08-09 16:04:25.420][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:25.421][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:25.440][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml. biodb.DEBUG[2025-08-09 16:04:25.441][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:25.443][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:25.444][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:25.446][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:25.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:25.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:25.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:25.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:25.457][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:25.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:25.461][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.463][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.464][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.465][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.470][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.471][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:25.473][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:25.474][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.475][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.476][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:25.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:25.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.480][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.481][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:25.483][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:25.484][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.485][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:25.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:25.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.490][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.491][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:25.492][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:25.494][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.495][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:25.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:25.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.500][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.501][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:25.502][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:25.503][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.505][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:25.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:25.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.510][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.511][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:25.512][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:25.513][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.515][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.516][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:25.517][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:25.518][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.519][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.521][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:25.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:25.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.525][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.526][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.527][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.528][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.529][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.534][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.536][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:25.537][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:25.538][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.539][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:25.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:25.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.544][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.546][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:25.547][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:25.548][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.549][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.551][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:25.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:25.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.554][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.556][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:25.557][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:25.558][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.559][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:25.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:25.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.564][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.569][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.574][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.579][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.584][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.588][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.593][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.598][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.603][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.608][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.613][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:25.614][self$createEntryFromContent] Accession numbers: 365445. biodb.TRACE[2025-08-09 16:04:25.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.619][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.630][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.635][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:25.636][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:25.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:25.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:25.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:25.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:25.647][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:25.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:25.649][private$loadEntries] Creating entries from ids [1]: "32151". biodb.DEBUG[2025-08-09 16:04:25.651][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:25.652][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:25.670][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml. biodb.DEBUG[2025-08-09 16:04:25.672][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:25.673][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:25.675][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:25.676][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:25.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:25.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:25.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:25.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:25.687][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:25.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:25.691][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.692][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.693][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.694][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.699][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.701][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:25.702][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:25.703][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.704][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.706][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:25.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:25.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.711][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:25.712][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:25.713][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.714][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:25.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:25.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.719][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.721][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:25.722][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:25.723][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.724][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:25.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:25.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.729][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.731][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:25.732][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:25.733][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.734][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:25.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:25.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.739][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.741][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:25.742][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:25.743][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.744][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.746][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:25.747][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:25.748][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.749][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.751][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:25.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:25.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.754][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.756][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.757][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.758][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.759][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.764][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.766][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:25.767][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:25.768][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.769][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:25.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:25.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.774][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.776][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:25.777][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:25.778][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.779][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.781][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:25.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:25.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.784][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.786][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:25.787][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:25.788][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.789][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:25.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:25.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.794][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.799][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:25.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.813][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.818][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.823][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.828][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.833][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.838][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.843][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:25.844][self$createEntryFromContent] Accession numbers: 32151. biodb.TRACE[2025-08-09 16:04:25.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.849][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.853][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.858][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:25.859][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:25.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:25.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:25.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:25.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:25.871][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:25.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:25.873][private$loadEntries] Creating entries from ids [1]: "67676". biodb.DEBUG[2025-08-09 16:04:25.875][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:25.876][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:25.894][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml. biodb.DEBUG[2025-08-09 16:04:25.896][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:25.897][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:25.899][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:25.901][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:25.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:25.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:25.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:25.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:25.912][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:25.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:25.915][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.917][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.918][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.919][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:25.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:25.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.924][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.925][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:25.927][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:25.928][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.929][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.930][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:25.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:25.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.934][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.935][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:25.937][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:25.938][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.939][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:25.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:25.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.945][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:25.947][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:25.948][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.949][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:25.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:25.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.954][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.955][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:25.957][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:25.958][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.959][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:25.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:25.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.964][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.965][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:25.967][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:25.968][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.969][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.970][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:25.972][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:25.973][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.974][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.975][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:25.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:25.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.980][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.982][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.983][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.984][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:25.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.989][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.991][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:25.992][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:25.993][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.994][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:25.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:25.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:25.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:25.999][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.001][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:26.002][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:26.003][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.004][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.011][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:26.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:26.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.015][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.016][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:26.018][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:26.019][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.020][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:26.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:26.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.025][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.030][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.035][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.039][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.044][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.049][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.054][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.058][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.063][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.068][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.073][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:26.074][self$createEntryFromContent] Accession numbers: 67676. biodb.TRACE[2025-08-09 16:04:26.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.079][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.084][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.088][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:26.090][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:26.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:26.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:26.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:26.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:26.101][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:26.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:26.103][private$loadEntries] Creating entries from ids [1]: "69690". biodb.DEBUG[2025-08-09 16:04:26.104][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:26.106][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:26.124][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml. biodb.DEBUG[2025-08-09 16:04:26.126][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:26.127][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:26.129][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:26.131][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:26.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:26.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:26.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:26.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:26.142][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:26.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:26.145][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.147][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.148][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.149][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.154][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.155][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:26.156][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:26.158][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.159][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.160][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:26.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:26.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.164][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.165][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:26.166][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:26.167][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.169][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:26.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:26.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.174][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.175][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:26.176][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:26.177][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.179][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:26.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:26.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.184][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.185][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:26.186][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:26.187][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.188][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:26.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:26.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.194][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.195][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:26.196][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:26.197][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.198][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.200][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:26.201][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:26.202][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.203][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.205][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:26.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:26.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.208][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.210][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.211][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.212][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.213][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.218][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.220][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:26.221][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:26.222][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.223][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:26.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:26.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.229][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.230][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:26.231][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:26.232][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.233][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.235][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:26.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:26.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.239][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.240][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:26.241][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:26.242][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.243][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:26.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:26.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.249][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.253][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.258][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.263][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.268][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.273][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.277][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.282][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.287][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.292][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.297][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:26.298][self$createEntryFromContent] Accession numbers: 69690. biodb.TRACE[2025-08-09 16:04:26.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.303][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.308][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.313][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:26.314][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:26.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:26.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:26.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:26.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:26.325][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:26.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:26.327][private$loadEntries] Creating entries from ids [1]: "69734". biodb.DEBUG[2025-08-09 16:04:26.329][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:26.330][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:26.348][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml. biodb.DEBUG[2025-08-09 16:04:26.350][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:26.352][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:26.353][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:26.355][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:26.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:26.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:26.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:26.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:26.366][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:26.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:26.370][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.371][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.372][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.373][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.378][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.380][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:26.381][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:26.382][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.383][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:26.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:26.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.394][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.396][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:26.397][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:26.398][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.399][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:26.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:26.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.404][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.406][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:26.407][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:26.408][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.409][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:26.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:26.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.415][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.416][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:26.417][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:26.418][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.419][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:26.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:26.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.424][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.426][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:26.427][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:26.428][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.429][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.431][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:26.432][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:26.433][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.434][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.436][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:26.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:26.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.439][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.441][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.442][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.443][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.444][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.449][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.450][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:26.452][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:26.453][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.454][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:26.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:26.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.459][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.460][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:26.462][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:26.463][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.464][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.465][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:26.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:26.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.469][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.470][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:26.472][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:26.473][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.474][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:26.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:26.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.479][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.484][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.489][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.493][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.498][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.503][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.507][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.512][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.517][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.522][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.527][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:26.528][self$createEntryFromContent] Accession numbers: 69734. biodb.TRACE[2025-08-09 16:04:26.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.533][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.538][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.543][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:26.544][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:26.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:26.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:26.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:26.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:26.555][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:26.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:26.557][private$loadEntries] Creating entries from ids [1]: "79978". biodb.DEBUG[2025-08-09 16:04:26.558][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:26.560][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:26.579][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml. biodb.DEBUG[2025-08-09 16:04:26.581][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:26.582][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:26.584][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:26.586][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:26.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:26.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:26.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:26.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:26.597][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:26.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:26.601][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.602][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.603][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.604][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.609][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.611][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:26.612][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:26.613][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.614][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.616][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:26.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:26.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.619][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.621][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:26.622][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:26.623][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.624][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:26.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:26.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.629][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.631][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:26.632][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:26.633][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.634][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:26.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:26.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.639][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.641][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:26.642][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:26.643][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.644][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:26.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:26.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.649][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.651][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:26.652][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:26.653][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.654][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.656][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:26.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:26.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.659][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.661][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:26.662][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:26.663][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.664][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.666][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:26.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:26.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.669][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.671][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.672][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.673][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.674][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.679][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.681][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:26.682][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:26.683][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.684][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:26.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:26.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.689][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.691][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:26.692][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:26.693][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.694][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.696][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:26.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:26.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.699][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.701][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:26.702][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:26.703][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.704][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:26.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:26.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.714][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.719][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.724][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.730][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.737][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.742][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.747][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.752][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.757][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.768][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:26.769][self$createEntryFromContent] Accession numbers: 79978. biodb.TRACE[2025-08-09 16:04:26.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.774][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.779][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.784][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:26.785][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:26.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:26.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:26.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:26.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:26.796][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:26.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.DEBUG[2025-08-09 16:04:26.799][private$loadEntries] Creating entries from ids [1]: "88771". biodb.DEBUG[2025-08-09 16:04:26.800][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)... fscache.INFO [2025-08-09 16:04:26.802][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649. fscache.DEBUG[2025-08-09 16:04:26.819][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml. biodb.DEBUG[2025-08-09 16:04:26.821][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache. biodb.DEBUG[2025-08-09 16:04:26.822][self$createEntryFromContent] Creating ChEBI entries from 1 content(s). biodb.DEBUG[2025-08-09 16:04:26.824][self$createEntryFromContent] Parsing 1 ChEBI entries. biodb.DEBUG[2025-08-09 16:04:26.825][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:26.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:26.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:26.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:26.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:26.838][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:26.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:26.842][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.843][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.844][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.845][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.851][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.852][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:26.853][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:26.854][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.855][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:26.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:26.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.861][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.862][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:26.863][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:26.864][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.865][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:26.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:26.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.871][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.872][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:26.873][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:26.875][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.876][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:26.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:26.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.881][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.882][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:26.883][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:26.884][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.886][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:26.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:26.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.891][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.892][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:26.893][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:26.894][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.895][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.897][ef$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:26.898][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:26.899][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.900][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.902][self$getBiodb()$getEntryFields()$get] Asked field names are: mass. biodb.TRACE[2025-08-09 16:04:26.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:26.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.905][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.907][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.908][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.909][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.910][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.915][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.917][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:26.918][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:26.919][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.920][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:26.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:26.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.925][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.927][ef$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:26.928][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:26.929][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.930][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.932][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars. biodb.TRACE[2025-08-09 16:04:26.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:26.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.935][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.937][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:26.938][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:26.939][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.940][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:26.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:26.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.945][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.950][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.955][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.960][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:26.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.965][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.970][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.975][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.984][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.989][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:26.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:26.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:26.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:26.994][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:26.995][self$createEntryFromContent] Accession numbers: 88771. biodb.TRACE[2025-08-09 16:04:26.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:26.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.000][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.005][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.010][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:27.011][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.022][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.029][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.033][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.038][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:27.039][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.051][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.057][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.062][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.066][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:27.068][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:27.070][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.081][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.088][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.093][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.094][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.095][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:27.096][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:27.097][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:27.099][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.100][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.101][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.102][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.103][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.105][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.106][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.107][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.108][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.109][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.111][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.112][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.113][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.114][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.116][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.117][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:27.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.122][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.138][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:04:27.141][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.152][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.158][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.163][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.164][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.165][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:27.166][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:27.167][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:27.168][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.169][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.171][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.172][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.173][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.174][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.175][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.176][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.178][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.179][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.180][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.181][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.182][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.183][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.185][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.186][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:27.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.191][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.195][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.200][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.202][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601]. biodb.DEBUG[2025-08-09 16:04:27.203][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.214][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.220][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.225][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.226][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.227][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:27.228][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:27.230][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:27.231][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.232][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.233][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.234][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.235][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.237][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.238][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.239][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.240][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.241][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.242][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.244][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.245][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.246][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.247][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.248][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:27.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.253][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.258][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.262][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147]. biodb.DEBUG[2025-08-09 16:04:27.265][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:27.266][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:27.268][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.280][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:27.284][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:27.287][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:27.292][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content. sched.DEBUG[2025-08-09 16:04:27.293][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:27.299][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.310][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.317][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.321][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.326][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:27.328][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.339][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.345][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.350][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.355][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:27.356][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.367][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.373][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.378][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.383][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:27.384][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.396][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.402][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.407][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.412][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:27.413][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:27.415][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.426][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.433][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.437][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.439][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.440][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:27.441][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:27.442][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:27.443][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.444][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.446][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.447][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.448][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.449][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.451][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.452][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.453][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.454][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.455][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.456][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.458][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.459][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.460][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.461][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:27.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.466][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.471][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.476][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.477][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636]. biodb.DEBUG[2025-08-09 16:04:27.479][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.496][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.502][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.507][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.508][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.509][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:27.511][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:27.512][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:27.513][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.514][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.515][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.516][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.518][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.519][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.520][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.521][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.522][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.523][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.525][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.526][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.527][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.528][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.529][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.530][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:27.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.535][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.540][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.545][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.546][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014]. biodb.DEBUG[2025-08-09 16:04:27.548][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.559][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.565][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.570][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.571][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.572][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:27.573][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:27.574][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:27.575][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.577][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.578][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.579][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.580][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.581][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.582][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.584][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.585][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.586][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.587][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.588][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.590][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.591][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.592][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.593][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:27.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.598][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.603][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.607][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.609][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799]. biodb.DEBUG[2025-08-09 16:04:27.610][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:27.611][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:27.638][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.649][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:27.653][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:27.655][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:27.660][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content. sched.DEBUG[2025-08-09 16:04:27.662][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:27.668][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.679][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.685][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.690][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:27.696][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.707][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.713][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.718][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.723][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:27.724][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.736][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.743][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.747][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.752][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:27.753][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.765][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.771][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.776][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.781][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:27.782][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.793][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.800][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:27.811][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.822][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.828][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.833][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.838][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:27.840][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.851][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.863][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.868][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:27.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.873][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:27.875][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:27.876][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.887][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.894][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.898][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.900][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.901][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:27.902][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:27.903][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:27.904][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.905][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.907][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.908][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.909][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.910][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.911][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.913][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.914][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.915][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.916][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.917][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.918][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.920][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.921][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.922][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:27.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.927][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.932][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.936][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.938][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014]. biodb.DEBUG[2025-08-09 16:04:27.939][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:27.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:27.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:27.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:27.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:27.951][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:27.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:27.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.957][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.964][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.966][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:27.967][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:27.968][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:27.969][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.970][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.972][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.973][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.974][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.975][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.977][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.978][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.979][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.980][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.981][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:27.982][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.984][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.985][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.986][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.987][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:27.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.992][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:27.997][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:27.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:27.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.002][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.003][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799]. biodb.DEBUG[2025-08-09 16:04:28.005][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.016][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.022][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.027][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.028][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.029][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:28.031][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:28.032][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:28.033][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.034][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.035][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.037][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.038][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.039][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.040][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.041][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.042][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.044][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.045][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.046][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.047][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.049][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.050][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.051][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:28.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.056][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.061][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.065][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.067][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764]. biodb.DEBUG[2025-08-09 16:04:28.068][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:28.069][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:28.072][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.083][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:28.087][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:28.090][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:28.095][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content. sched.DEBUG[2025-08-09 16:04:28.097][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:28.104][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.115][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.121][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.126][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.131][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:28.132][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.143][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.150][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.154][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.159][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:28.161][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.172][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.178][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.183][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.188][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:28.189][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.200][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.206][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.211][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.222][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:28.224][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:28.225][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.236][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.243][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.247][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.249][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.250][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:28.251][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:28.252][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:28.253][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.254][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.256][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.257][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.258][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.259][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.260][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.261][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.263][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.264][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.265][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.266][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.267][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.268][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.270][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.271][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:28.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.276][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.280][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.285][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.287][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535]. biodb.DEBUG[2025-08-09 16:04:28.288][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.299][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.305][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.310][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.311][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.312][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:28.313][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:28.315][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:28.316][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.317][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.318][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.319][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.320][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.322][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.323][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.324][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.325][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.327][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.328][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.329][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.330][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.331][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.333][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.334][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:28.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.339][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.344][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.349][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.350][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:04:28.352][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.363][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.369][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.374][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.376][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.377][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:28.378][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:28.379][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:28.380][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.382][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.383][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.384][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.385][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.386][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.388][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.389][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.390][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.391][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.393][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.394][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.395][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.396][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.397][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.399][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:28.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.404][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.409][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.414][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587]. biodb.DEBUG[2025-08-09 16:04:28.416][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:28.418][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:28.420][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.431][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:28.436][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:28.439][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:28.441][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/633ffa8aab56d260ba52bc860645ac89.content. sched.DEBUG[2025-08-09 16:04:28.443][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:28.446][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.457][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.463][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.468][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.473][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:28.474][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.486][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.492][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.497][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.502][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:28.503][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.515][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.521][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.526][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.531][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:28.532][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.543][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.550][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.554][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.559][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:28.561][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.574][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.587][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.592][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.597][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:28.598][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:28.600][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.611][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.617][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.622][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.623][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.624][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:28.625][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:28.627][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:28.628][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.629][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.630][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.631][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.633][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.634][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.635][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.636][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.637][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.638][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.640][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.641][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.642][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.643][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.644][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.646][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:28.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.650][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.655][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.660][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.662][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303]. biodb.DEBUG[2025-08-09 16:04:28.663][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.674][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.680][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.685][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.686][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.688][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:28.689][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:28.690][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:28.691][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.692][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.693][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.695][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.696][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.697][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.698][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.699][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.700][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.702][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.703][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.704][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.705][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.706][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.708][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.709][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:28.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.714][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.718][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.723][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767]. biodb.DEBUG[2025-08-09 16:04:28.726][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.738][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.744][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.749][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.750][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.751][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:28.752][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:28.753][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:28.754][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.756][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.757][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.758][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.759][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.760][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.762][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.763][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.764][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.765][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.766][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.768][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.769][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.770][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.771][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.772][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:28.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.777][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.782][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.787][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.788][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378]. biodb.DEBUG[2025-08-09 16:04:28.790][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:28.791][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:28.818][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.829][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:28.833][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:28.836][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:28.838][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/2e865a03592d6effdf242ff63104f35a.content. sched.DEBUG[2025-08-09 16:04:28.839][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. sched.DEBUG[2025-08-09 16:04:28.843][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:28.845][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:28.848][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/f0c73645ca32490f91d503a462d812b2.content. sched.DEBUG[2025-08-09 16:04:28.849][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:28.852][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.863][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.869][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.874][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.879][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:28.880][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.891][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.897][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.902][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.907][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:28.908][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.919][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.926][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.930][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:28.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.935][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:28.942][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:28.945][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:28.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:28.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:28.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:28.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:28.956][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:28.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:28.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.967][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.968][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.969][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:28.970][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:28.971][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:28.973][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.974][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.975][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.976][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.977][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.978][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.980][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.981][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.982][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.983][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.984][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:28.986][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.987][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.988][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.989][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.990][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:28.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:28.995][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:28.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:28.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.000][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.005][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.006][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648]. biodb.DEBUG[2025-08-09 16:04:29.008][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.019][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.025][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.030][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.031][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.032][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:29.033][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:29.034][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:29.035][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.037][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.038][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.039][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.040][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.041][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.042][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.044][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.045][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.046][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.047][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.048][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.050][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.051][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.052][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.053][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:29.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.058][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.063][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.067][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.069][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440]. biodb.DEBUG[2025-08-09 16:04:29.070][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.081][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.088][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.092][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.094][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.095][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:29.096][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:29.097][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:29.098][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.099][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.101][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.102][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.103][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.104][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.106][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.107][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.108][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.109][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.111][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.112][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.113][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.114][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.115][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.116][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:29.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.121][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.126][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.131][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.132][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447]. biodb.DEBUG[2025-08-09 16:04:29.134][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:29.135][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:29.137][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.148][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:29.152][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:29.155][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:29.158][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content. sched.DEBUG[2025-08-09 16:04:29.159][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:29.162][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.173][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.179][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.184][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.189][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:29.190][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.201][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.207][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.212][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.217][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:29.218][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.230][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.236][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.241][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.245][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:29.247][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:29.249][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.260][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.266][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.271][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.272][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.274][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:29.275][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:29.276][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:29.277][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.278][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.280][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.281][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.282][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.283][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.285][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.286][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.287][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.288][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.289][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.291][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.313][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.315][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.316][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.317][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:29.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.322][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.327][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.335][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.337][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:04:29.338][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.349][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.355][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.360][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.361][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.362][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:29.363][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:29.365][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:29.366][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.367][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.368][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.369][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.370][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.372][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.373][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.374][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.375][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.376][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.377][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.378][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.380][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.381][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.382][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.383][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:29.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.388][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.393][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.397][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.399][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601]. biodb.DEBUG[2025-08-09 16:04:29.400][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.411][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.417][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.422][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.423][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.424][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:29.425][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:29.426][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:29.427][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.429][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.430][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.431][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.432][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.433][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.435][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.436][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.437][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.438][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.439][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.440][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.442][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.443][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.444][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.445][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:29.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.450][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.455][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.460][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.461][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147]. biodb.DEBUG[2025-08-09 16:04:29.462][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:29.463][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:29.466][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.477][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:29.481][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:29.484][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:29.487][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content. sched.DEBUG[2025-08-09 16:04:29.488][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:29.491][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.503][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.509][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.514][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.518][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:29.520][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.531][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.537][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.542][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.547][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:29.548][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.559][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.565][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.570][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.575][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:29.576][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:29.578][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.589][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.595][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.600][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.601][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.602][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:29.604][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:29.605][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:29.606][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.607][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.608][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.609][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.611][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.612][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.613][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.614][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.615][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.617][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.618][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.619][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.620][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.621][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.622][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.624][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:29.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.629][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.633][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.638][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.640][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636]. biodb.DEBUG[2025-08-09 16:04:29.641][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.652][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.663][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.664][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.666][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:29.672][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:29.674][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:29.675][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.676][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.678][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.679][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.680][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.681][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.682][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.683][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.684][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.686][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.687][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.688][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.689][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.690][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.692][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.693][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:29.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.698][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.702][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.709][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199]. biodb.DEBUG[2025-08-09 16:04:29.710][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.721][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.727][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.731][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.733][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.734][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:29.735][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:29.736][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:29.737][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.739][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.740][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.741][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.742][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.743][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.745][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.746][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.747][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.748][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.749][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:29.750][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.752][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.753][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.754][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.755][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:29.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.760][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.764][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:29.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.769][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.771][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648]. biodb.DEBUG[2025-08-09 16:04:29.772][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:29.773][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:29.800][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.811][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:29.815][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:29.818][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:29.822][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content. sched.DEBUG[2025-08-09 16:04:29.824][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:29.827][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.839][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.845][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.850][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.855][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:29.856][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.867][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.873][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.878][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.883][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:29.884][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.895][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.901][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.906][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.911][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:29.912][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.923][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.930][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.934][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.939][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:29.940][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.952][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.958][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.967][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:29.969][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:29.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:29.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:29.980][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:29.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:29.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.986][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.991][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:29.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:29.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:29.995][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:29.997][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:29.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:29.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.008][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.014][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.019][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.024][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.025][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.043][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.049][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.054][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.058][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.060][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:30.061][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.073][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.079][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.083][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.084][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:30.086][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:30.087][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:30.088][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:30.089][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:30.090][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.091][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.093][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.094][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.095][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.096][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.097][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.098][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.099][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:30.101][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:30.102][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.103][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.104][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.105][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.106][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:30.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.111][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.116][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.121][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.122][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648]. biodb.DEBUG[2025-08-09 16:04:30.124][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.135][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.141][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.146][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.147][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:30.148][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:30.149][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:30.150][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:30.151][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:30.152][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.154][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.155][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.156][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.157][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.158][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.159][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.161][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.162][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:30.163][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:30.164][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.165][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.167][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.168][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.169][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:30.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.174][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.178][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.183][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440]. biodb.DEBUG[2025-08-09 16:04:30.186][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.197][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.203][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.210][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:30.211][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:30.212][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:30.213][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:30.214][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:30.215][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.217][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.218][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.219][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.220][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.221][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.222][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.224][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.225][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:30.226][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:30.227][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.228][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.230][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.231][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.232][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:30.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.237][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.241][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:30.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.246][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.248][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447]. biodb.DEBUG[2025-08-09 16:04:30.249][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:30.250][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:30.252][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.263][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:30.267][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:30.270][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:30.275][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/3d37e3be2f5c6d64498effb7934e924b.content. sched.DEBUG[2025-08-09 16:04:30.277][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:30.283][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.294][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.301][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.310][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.312][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.323][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.334][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.338][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.340][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.351][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.357][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.362][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.367][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.368][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.379][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.385][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.401][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.402][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.413][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.419][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.424][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.428][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.430][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.441][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.447][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.452][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.457][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.458][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.469][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.476][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.481][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.485][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.487][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.498][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.505][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.509][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.514][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.516][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.527][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.538][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.543][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.545][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.556][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.563][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.568][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.574][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.585][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.591][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.596][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.601][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.602][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.614][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.620][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.625][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.629][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.631][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.642][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.648][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.653][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.658][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.659][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.670][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.678][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.683][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.688][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.690][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.701][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.712][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.717][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.719][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.730][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.737][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.744][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.750][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.751][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.763][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.775][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.780][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.785][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.786][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.798][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.813][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.815][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.826][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.832][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.842][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.843][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.855][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.861][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.866][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.871][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.872][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.884][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.890][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.895][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.899][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.901][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.912][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.918][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.923][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.928][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.929][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.941][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.948][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.953][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.957][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.959][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.970][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:30.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.976][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.981][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:30.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:30.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:30.985][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:30.987][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:30.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:30.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:30.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:30.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:30.998][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:30.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.009][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.014][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:31.015][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.027][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.033][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.038][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.043][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:31.044][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.055][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.061][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.066][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.071][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:31.072][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.084][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.090][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.095][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.099][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:31.101][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.112][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.118][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.128][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:31.129][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.146][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.152][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.157][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.162][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:31.163][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:31.165][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.176][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.182][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.187][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.188][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.189][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:31.191][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:31.192][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:31.193][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.194][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.195][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.196][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.198][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.199][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.200][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.201][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.202][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.203][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.205][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.206][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.207][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.208][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.209][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.211][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:31.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.215][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.220][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.225][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.227][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781]. biodb.DEBUG[2025-08-09 16:04:31.228][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.239][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.250][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.251][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.252][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:31.254][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:31.255][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:31.256][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.257][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.258][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.260][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.261][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.262][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.263][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.264][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.265][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.267][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.268][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.269][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.270][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.272][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.273][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.274][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:31.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.279][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.284][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.291][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601]. biodb.DEBUG[2025-08-09 16:04:31.295][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.311][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.320][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.325][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.326][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.327][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:31.329][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:31.330][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:31.331][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.332][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.333][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.334][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.336][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.337][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.338][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.339][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.340][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.342][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.343][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.344][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.345][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.346][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.347][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.349][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:31.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.354][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.358][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.363][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.365][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147]. biodb.DEBUG[2025-08-09 16:04:31.366][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:31.367][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:31.369][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.381][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:31.385][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:31.388][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:31.393][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content. sched.DEBUG[2025-08-09 16:04:31.394][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:31.401][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.412][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.418][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.423][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.428][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:31.429][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.440][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.446][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.451][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.456][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:31.457][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.468][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.475][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.479][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.484][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:31.486][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.497][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.509][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.514][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:31.520][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:31.522][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.533][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.540][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.544][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.545][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.547][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:31.548][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:31.549][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:31.550][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.551][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.552][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.554][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.555][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.556][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.557][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.558][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.559][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.561][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.562][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.563][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.564][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.565][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.566][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.568][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.572][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.577][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.582][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636]. biodb.DEBUG[2025-08-09 16:04:31.585][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.596][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.602][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.607][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.608][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.609][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:31.610][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:31.611][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:31.612][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.614][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.615][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.616][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.617][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.618][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.620][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.621][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.622][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.623][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.624][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.625][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.627][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.628][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.629][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.630][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:31.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.635][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.640][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014]. biodb.DEBUG[2025-08-09 16:04:31.647][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.658][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.665][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.669][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.671][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.672][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:31.673][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:31.674][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:31.675][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.676][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.678][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.679][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.680][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.681][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.682][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.684][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.685][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.686][private$selectFields] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.687][private$organizeFieldsByGroups] Fields [1]: "chebi.id" biodb.TRACE[2025-08-09 16:04:31.688][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.690][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.691][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.692][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.693][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()" biodb.TRACE[2025-08-09 16:04:31.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.698][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.703][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:31.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.709][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799]. biodb.DEBUG[2025-08-09 16:04:31.710][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:31.711][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.TRACE[2025-08-09 16:04:31.740][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:04:31.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:04:31.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.744][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.746][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:04:31.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:04:31.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.749][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.750][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:04:31.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:04:31.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.754][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.INFO [2025-08-09 16:04:31.761][biodb::testThat] biodb.INFO [2025-08-09 16:04:31.762][biodb::testThat] Running test function test_annotateMzValues_additional_fields (" Additional fields are accepted in annotateMzValues() "). biodb.INFO [2025-08-09 16:04:31.763][biodb::testThat] -------------------------------------------------------------------------------- biodb.INFO [2025-08-09 16:04:31.765][biodb::testThat] biodb.TRACE[2025-08-09 16:04:31.769][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:04:31.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:04:31.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.772][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.774][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:04:31.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:04:31.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.777][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.779][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass. biodb.TRACE[2025-08-09 16:04:31.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass. biodb.TRACE[2025-08-09 16:04:31.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.782][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.787][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.792][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.797][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.802][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.807][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.812][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.817][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.821][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.826][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.831][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.836][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.841][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:31.845][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.856][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:31.860][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:31.863][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:31.872][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content. sched.DEBUG[2025-08-09 16:04:31.873][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:31.876][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.887][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.893][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.898][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.903][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:04:31.905][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:31.908][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:31.910][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content. sched.DEBUG[2025-08-09 16:04:31.911][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:31.914][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.925][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.931][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.936][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.940][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:31.942][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.953][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.959][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.964][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.968][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:31.970][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:31.972][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:31.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:31.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:31.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:31.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:31.982][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:31.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:31.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:31.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:31.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.989][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:31.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:31.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.993][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.995][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:31.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:31.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:31.998][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:31.999][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.003][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.008][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.012][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.017][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.022][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.027][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.032][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.037][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.042][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.043][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.047][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.048][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.051][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.056][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.061][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.066][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.070][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.072][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.075][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.077][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.080][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.085][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.090][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.095][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.099][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.100][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:32.102][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:32.103][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:32.104][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:32.105][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:32.106][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.108][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.109][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.110][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.111][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.112][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.113][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.115][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.116][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.117][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.118][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.119][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.120][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.122][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.123][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.124][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.125][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.126][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.127][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.129][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.130][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.131][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.132][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.133][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.136][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.137][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.138][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.139][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.140][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.142][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.143][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.144][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.145][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.146][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.148][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.149][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.150][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.151][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.152][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.153][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.155][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.156][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.157][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.158][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.159][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.161][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.162][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.163][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.164][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.165][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.167][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.168][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.169][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.170][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.171][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.172][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.174][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.175][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.176][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.177][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.179][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.180][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.181][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.182][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.183][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.185][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.186][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.187][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.188][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.189][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.190][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.192][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.193][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.194][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.195][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.196][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.198][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.199][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.200][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.201][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.202][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.204][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.205][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.206][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.207][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.208][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.210][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.211][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.212][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.219][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.220][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.222][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.223][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.224][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.225][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.226][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.228][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:32.229][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:32.230][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.231][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.232][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.234][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.235][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.236][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.237][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.238][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.240][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.241][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.242][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.243][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.244][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.246][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.247][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.248][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.249][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.250][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.251][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.252][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.254][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.255][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.256][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.257][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.258][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.260][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.261][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.262][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.263][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.264][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.265][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.266][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.268][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.269][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.270][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.271][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.272][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.273][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.275][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.276][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.277][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.278][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.279][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.280][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.282][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:32.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.286][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.291][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.296][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.301][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.302][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.306][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.307][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.311][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.316][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.320][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.325][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.330][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.331][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.335][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.340][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.345][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.354][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.359][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.364][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.369][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.374][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.379][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.384][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.394][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.398][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.400][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.403][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.405][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.408][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.409][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.413][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.418][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.423][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.427][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.432][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.437][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.442][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.449][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...]. biodb.DEBUG[2025-08-09 16:04:32.451][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:32.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:32.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:32.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:32.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:32.462][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:32.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:32.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.468][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.473][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.475][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.478][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.479][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.483][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.488][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.493][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.497][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.502][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.507][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.512][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.517][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.522][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.523][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.527][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.528][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.531][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.536][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.541][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.546][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.557][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.558][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.562][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.563][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.567][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.572][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.576][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.581][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.588][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.589][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:32.590][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:32.592][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:32.593][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:32.594][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:32.595][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.596][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.597][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.599][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.600][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.601][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.602][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.603][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.604][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.606][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.607][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.608][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.609][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.610][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.611][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.613][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.614][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.615][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.616][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.617][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.618][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.620][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.621][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.622][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.623][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.624][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.625][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.627][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.628][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.629][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.630][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.631][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.632][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.634][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.635][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.636][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.637][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.638][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.640][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.641][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.642][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.643][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.644][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.645][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.646][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.648][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.649][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.650][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.651][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.652][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.654][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.655][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.656][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.657][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.658][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.659][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.660][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.662][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.663][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.664][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.665][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.666][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.667][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.669][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.670][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.671][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.672][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.673][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.674][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.676][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.677][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.678][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.679][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.680][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.681][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.683][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.684][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.685][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.686][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.687][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.688][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.690][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.691][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.692][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.693][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.694][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.696][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.697][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.698][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.699][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.700][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.701][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.703][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.704][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.705][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.706][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.707][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:32.709][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:32.710][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.711][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.712][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.713][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.714][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.716][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.717][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.718][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.719][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.720][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.722][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.723][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.724][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.725][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.726][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.727][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.728][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.730][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.732][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.734][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.735][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.736][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.738][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.739][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.740][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.741][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.742][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.743][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.745][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.746][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.747][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.748][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.749][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.751][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.752][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.753][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.754][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.755][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.756][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.758][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.759][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.760][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.761][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.762][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.763][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.765][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.766][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.767][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.768][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:32.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.773][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.778][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.783][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.788][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.792][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.797][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.802][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.807][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.812][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.817][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.821][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:32.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:32.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.826][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.831][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:32.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:32.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.841][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.846][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.850][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:32.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:32.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.855][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.860][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.861][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.865][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:32.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.870][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.875][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.880][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:32.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.884][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.889][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.901][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:32.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.906][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.911][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.912][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.915][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.917][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:32.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:32.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.920][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.930][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:32.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:32.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.935][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.940][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.944][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:32.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:32.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.949][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...]. biodb.DEBUG[2025-08-09 16:04:32.957][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:32.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:32.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:32.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:32.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:32.968][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:32.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:32.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.974][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:32.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:32.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.981][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.984][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.985][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:32.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.989][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.994][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:32.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:32.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:32.998][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.000][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.003][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.008][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:33.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:33.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:33.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:33.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.017][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:33.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:33.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.022][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:33.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:33.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.027][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.028][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.032][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.037][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.042][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.046][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.051][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.056][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.057][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:33.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.061][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:33.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:33.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.066][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:33.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:33.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.072][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:33.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:33.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.076][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:33.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:33.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.081][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:33.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:33.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.086][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.088][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:33.089][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:33.090][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:33.091][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:33.092][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:33.093][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:33.095][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:33.096][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.097][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.098][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:33.099][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:33.101][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.102][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.103][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.104][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.105][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.106][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.108][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.109][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.110][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.111][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.112][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:33.114][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:33.115][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.116][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.117][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:33.118][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:33.119][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.121][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.122][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.123][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.124][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.125][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.127][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.128][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.129][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.130][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.131][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.132][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.134][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.135][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.136][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:33.137][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:33.138][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.139][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.141][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:33.142][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:33.143][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.144][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.145][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:33.147][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:33.148][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.149][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.150][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:33.151][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:33.153][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.154][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.155][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:33.156][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:33.157][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.158][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.160][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.161][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.162][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.163][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.164][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.166][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.167][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.168][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.169][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:33.170][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:33.171][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.173][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.174][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:33.175][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:33.176][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.177][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.178][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.180][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.181][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.182][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.183][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.184][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.185][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.187][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.188][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.189][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.190][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.191][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.192][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:33.194][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:33.195][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.196][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.197][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:33.198][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:33.200][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.201][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.202][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:33.203][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:33.204][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.206][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.207][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:33.208][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:33.209][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:33.210][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:33.212][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.213][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.214][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:33.215][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:33.216][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.218][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.219][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.220][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.221][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.222][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.223][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.225][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.232][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.233][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.234][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:33.236][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:33.237][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.238][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.239][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:33.241][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:33.242][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.243][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.244][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.245][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.246][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.248][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.249][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.250][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.251][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.252][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.253][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:33.255][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:33.256][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.257][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.258][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:33.259][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:33.260][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.262][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.263][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:33.264][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:33.265][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.266][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.268][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:33.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:33.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:33.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.272][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:33.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:33.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.277][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:33.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:33.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.282][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.283][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:33.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:33.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.287][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.288][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:33.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:33.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.292][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.293][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:33.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:33.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.296][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.301][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.306][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.311][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.316][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.320][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.325][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:33.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:33.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.330][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:33.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:33.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.335][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:33.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:33.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.339][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:33.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:33.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.344][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:33.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:33.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.349][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:33.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:33.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.354][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.359][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.363][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.368][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.373][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.378][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.383][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.384][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:33.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:33.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.388][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.389][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:33.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:33.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.393][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.394][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:33.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:33.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.398][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:33.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:33.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.403][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:33.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:33.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.407][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:33.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:33.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.412][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:33.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:33.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.417][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:33.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:33.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.422][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:33.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:33.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.427][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.433][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...]. biodb.DEBUG[2025-08-09 16:04:33.434][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:33.435][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:33.439][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:33.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:33.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:33.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:33.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:33.450][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:33.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:33.454][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:33.457][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:33.459][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content. sched.DEBUG[2025-08-09 16:04:33.460][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:33.463][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:33.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:33.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:33.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:33.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:33.474][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:33.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:33.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.480][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.485][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.490][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:33.491][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:33.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:33.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:33.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:33.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:33.503][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:33.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:33.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.509][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.514][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.518][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:04:33.521][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:33.523][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:33.526][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content. sched.DEBUG[2025-08-09 16:04:33.528][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:33.531][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:33.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:33.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:33.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:33.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:33.542][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:33.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:33.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.548][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.553][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:33.559][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:33.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:33.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:33.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:33.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:33.576][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:33.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:33.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.583][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.588][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.592][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:33.594][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:33.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:33.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:33.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:33.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:33.605][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:33.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:33.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.611][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.616][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.620][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:33.622][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:33.624][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:33.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:33.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:33.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:33.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:33.635][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:33.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:33.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:33.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.641][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:33.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:33.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.646][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.647][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:33.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:33.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.650][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.652][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:33.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:33.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.655][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.660][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.665][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.670][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.674][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:33.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:33.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.679][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:33.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:33.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.684][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:33.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:33.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.689][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:33.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:33.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.694][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.698][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.699][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.703][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.708][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.712][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.717][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.722][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:33.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:33.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.727][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:33.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:33.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.732][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:33.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:33.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.737][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:33.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:33.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.742][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:33.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:33.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.746][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:33.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:33.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.751][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.752][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:33.753][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:33.755][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:33.756][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:33.757][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:33.758][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:33.759][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:33.761][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.762][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.763][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:33.764][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:33.765][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.766][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.768][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.769][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.770][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.771][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.772][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.774][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.775][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.776][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.777][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:33.778][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:33.780][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.781][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.782][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:33.783][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:33.784][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.785][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.787][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.788][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.789][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.790][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.791][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.793][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.794][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.795][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.796][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.797][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.798][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.800][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.801][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:33.802][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:33.803][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.804][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.805][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:33.807][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:33.808][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.809][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.810][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:33.811][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:33.813][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.814][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.815][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:33.816][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:33.817][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.818][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.820][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:33.821][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:33.822][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.823][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.824][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.826][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.827][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.828][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.829][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.830][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.831][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.833][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.834][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:33.835][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:33.836][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.837][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.838][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:33.840][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:33.841][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.842][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.843][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.844][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.845][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.847][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.848][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.849][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.850][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.851][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.853][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.854][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.855][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.856][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.857][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:33.859][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:33.860][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.861][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.862][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:33.863][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:33.864][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.866][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.867][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:33.868][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:33.869][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.870][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.871][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:33.873][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:33.874][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:33.875][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:33.876][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.877][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.878][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:33.880][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:33.881][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.882][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.883][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.884][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.886][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.887][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.888][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.889][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.890][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.891][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.893][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:33.894][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:33.895][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.896][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.897][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:33.899][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:33.900][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.901][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.902][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.903][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:33.905][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.906][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.907][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.908][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:33.915][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.917][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.918][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.919][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:33.921][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.922][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.923][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:33.924][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:33.925][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.926][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.928][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:33.929][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:33.930][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.931][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.932][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:33.933][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:33.935][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.936][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.937][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:33.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:33.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:33.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:33.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:33.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.947][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:33.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:33.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.951][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.953][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:33.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:33.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.956][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.958][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:33.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:33.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.961][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.962][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:33.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:33.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.966][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.971][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.976][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:33.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.980][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.985][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:33.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:33.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:33.995][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:33.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:33.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.000][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.009][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.014][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.019][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.023][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.025][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.028][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.030][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.033][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.034][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.038][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.043][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.048][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.053][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.058][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.062][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.067][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.069][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.072][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.073][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.077][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.078][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.082][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.087][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.092][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.096][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.101][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.106][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.111][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...]. biodb.DEBUG[2025-08-09 16:04:34.119][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:34.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:34.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:34.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:34.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:34.130][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:34.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:34.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.136][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.141][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.142][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.146][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.147][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.151][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.156][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.160][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.165][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.175][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.180][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.184][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.189][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.191][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.194][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.195][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.199][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.204][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.208][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.213][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.218][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.223][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.224][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.228][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.232][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.237][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.242][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.253][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.254][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:34.255][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:34.256][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:34.258][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:34.259][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:34.260][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.261][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.262][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.264][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.265][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.266][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.267][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.268][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.269][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.271][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.272][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.273][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.274][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.275][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.276][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.278][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.279][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.280][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.281][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.282][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.283][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.285][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.286][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.287][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.288][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.289][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.290][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.292][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.293][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.294][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.295][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.296][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.297][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.299][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.300][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.301][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.302][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.303][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.304][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.305][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.307][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.308][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.309][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.310][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.311][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.313][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.314][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.315][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.316][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.317][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.318][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.319][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.321][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.322][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.323][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.324][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.325][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.327][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.328][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.329][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.330][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.331][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.332][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.333][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.335][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.336][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.337][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.338][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.339][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.341][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.342][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.343][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.344][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.345][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.346][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.347][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.349][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.350][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.351][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.352][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.353][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.354][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.356][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.357][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.358][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.359][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.360][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.361][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.363][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.364][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.365][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.366][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.367][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.368][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.370][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.371][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.372][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:34.373][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:34.374][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.376][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.377][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.378][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.379][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.380][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.381][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.382][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.384][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.385][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.386][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.387][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.388][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.390][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.391][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.392][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.393][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.394][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.395][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.397][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.398][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.399][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.400][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.401][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.402][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.404][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.405][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.406][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.407][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.408][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.410][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.411][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.412][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.413][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.414][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.415][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.417][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.418][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.419][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.420][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.421][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.423][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.424][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.425][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.426][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.427][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.428][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.429][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.431][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:34.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.436][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.440][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.445][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.447][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.450][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.451][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.455][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.456][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.460][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.465][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.469][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.474][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.484][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.489][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.494][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.499][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.503][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.508][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.518][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.519][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.523][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.524][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.528][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.529][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.532][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.537][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.542][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.547][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.552][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.557][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.562][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.563][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.566][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.568][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.571][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.572][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.576][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.587][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.592][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.597][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.602][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.606][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.611][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.618][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...]. biodb.DEBUG[2025-08-09 16:04:34.619][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:34.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:34.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:34.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:34.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:34.630][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:34.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:34.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.636][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.641][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.642][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.646][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.647][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.651][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.656][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.660][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.665][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.670][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.675][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.680][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.684][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.689][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.690][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.694][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.695][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.699][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.703][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.708][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.713][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.718][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.719][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.723][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.728][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.732][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.739][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.746][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.753][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.754][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:34.756][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:34.757][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:34.758][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:34.759][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:34.761][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.762][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.763][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.764][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.765][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.767][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.768][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.769][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.770][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.771][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.772][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.774][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.775][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.776][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.777][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.778][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.780][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.781][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.782][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.783][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.784][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.786][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.787][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.788][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.789][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.790][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.791][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.793][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.794][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.795][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.796][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.797][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.798][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.800][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.801][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.802][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.803][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.804][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.805][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.807][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.808][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.809][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.810][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.811][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.812][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.814][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.815][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.816][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.817][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.819][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.820][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.821][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.822][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.823][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.824][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.826][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.827][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.828][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.829][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.830][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.831][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.833][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.834][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.835][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.836][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.837][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.839][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.840][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.841][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.842][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.843][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.844][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.846][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.847][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:34.848][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.849][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.850][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.852][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.853][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.854][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.855][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.856][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.857][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.859][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.860][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.861][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.862][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.863][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.865][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.866][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.867][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.868][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.869][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.870][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.872][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.873][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.874][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:34.875][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:34.876][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.878][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.879][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.880][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.881][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.882][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.883][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.885][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.886][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.887][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.888][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.889][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.890][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.892][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.893][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.894][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.895][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.896][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.898][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.899][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.900][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:34.901][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:34.902][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.904][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.905][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.906][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:34.907][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.908][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.909][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.911][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:34.912][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.913][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.914][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:34.915][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:34.922][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.924][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.925][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:34.926][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:34.927][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.929][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.930][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:34.931][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:34.932][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.933][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.934][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:34.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.939][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.944][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:34.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:34.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.949][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.951][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.954][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.959][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.960][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:34.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:34.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.964][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.969][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.974][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:34.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.978][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.983][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.988][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:34.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:34.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.993][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:34.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:34.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:34.998][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:34.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:35.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.003][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:35.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:35.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.007][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:35.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:35.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.012][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:35.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:35.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.017][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:35.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.022][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.027][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.032][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.037][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.042][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.046][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.051][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.056][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.058][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:35.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:35.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.061][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:35.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:35.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.066][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:35.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:35.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.071][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:35.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:35.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.076][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:35.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:35.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.081][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:35.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:35.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.085][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:35.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:35.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.090][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:35.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:35.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.095][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.101][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...]. biodb.DEBUG[2025-08-09 16:04:35.103][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:35.104][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:35.107][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:35.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:35.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:35.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:35.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:35.118][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:35.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:35.122][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:35.125][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:35.127][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content. sched.DEBUG[2025-08-09 16:04:35.129][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:35.131][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:35.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:35.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:35.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:35.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:35.142][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:35.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:35.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.148][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.153][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.158][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:35.160][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:35.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:35.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:35.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:35.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:35.171][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:35.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:35.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.177][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.182][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.186][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:35.188][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:35.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:35.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:35.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:35.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:35.199][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:35.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:35.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.205][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.210][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.215][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:35.216][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:35.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:35.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:35.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:35.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:35.228][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:35.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:35.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.234][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.239][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.243][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:35.245][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:35.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:35.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:35.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:35.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:35.256][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:35.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:35.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.269][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.274][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.278][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:35.280][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:35.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:35.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:35.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:35.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:35.291][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:35.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:35.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.297][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.307][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:35.308][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:35.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:35.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:35.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:35.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:35.319][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:35.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:35.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.325][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.330][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.335][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:35.336][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:35.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:35.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:35.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:35.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:35.347][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:35.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:35.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.354][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.358][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.363][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:04:35.365][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:35.368][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:35.370][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content. sched.DEBUG[2025-08-09 16:04:35.372][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:35.374][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:35.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:35.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:35.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:35.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:35.385][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:35.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:35.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.392][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.396][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.401][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:35.403][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:35.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:35.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:35.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:35.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:35.414][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:35.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.420][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.425][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.430][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:35.431][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:35.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:35.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:35.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:35.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:35.443][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:35.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:35.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.449][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.454][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.459][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:35.460][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:35.462][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:35.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:35.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:35.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:35.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:35.473][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:35.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:35.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:35.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:35.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.479][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:35.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:35.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.484][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.485][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:35.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:35.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.489][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.490][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:35.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:35.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.494][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.498][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.503][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:35.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:35.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.508][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.509][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:35.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:35.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:35.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:35.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.518][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:35.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:35.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.523][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:35.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:35.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.528][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:35.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:35.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.532][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.534][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.537][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.538][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.542][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.547][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.552][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.556][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.561][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.562][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:35.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:35.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.566][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.567][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:35.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:35.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.571][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:35.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:35.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.575][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:35.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:35.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.580][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:35.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:35.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.585][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:35.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:35.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.590][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.591][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:35.592][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:35.593][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:35.594][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:35.596][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:35.597][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:35.598][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:35.599][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.600][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.601][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:35.603][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:35.604][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.605][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.606][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.607][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.609][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.610][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.611][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:35.618][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:35.620][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.621][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.622][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:35.623][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:35.624][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.625][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.627][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:35.628][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:35.629][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.630][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.631][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.633][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.634][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.635][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.636][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.637][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.638][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.639][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.641][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.642][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.643][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.644][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.645][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:35.646][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:35.648][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.649][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.650][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:35.651][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:35.652][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.653][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.654][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:35.656][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:35.657][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.658][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.659][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:35.660][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:35.661][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.663][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.664][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:35.665][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:35.666][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.667][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.668][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.670][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.671][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.672][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.673][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:35.674][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:35.675][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.676][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.678][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:35.679][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:35.680][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.681][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.682][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:35.683][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:35.685][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.686][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.687][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.688][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.689][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.690][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.692][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.693][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.694][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.695][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.696][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.697][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.699][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.700][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.701][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:35.702][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:35.703][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.704][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.705][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:35.707][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:35.708][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.709][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.710][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:35.711][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:35.712][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.714][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.715][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:35.716][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:35.717][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:35.718][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:35.719][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.721][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.722][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:35.723][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:35.724][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.725][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.726][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.728][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.729][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.730][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.731][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:35.732][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:35.733][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.735][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.736][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:35.738][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:35.740][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.741][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.743][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:35.745][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:35.746][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.748][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.749][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.750][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.752][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.753][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.754][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.755][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.756][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.757][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.759][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.760][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.761][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.762][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.763][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:35.764][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:35.766][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.767][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.768][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:35.769][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:35.770][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.771][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.773][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:35.774][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:35.775][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.776][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.777][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:35.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:35.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:35.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.782][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:35.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:35.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.787][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:35.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:35.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.792][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.793][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:35.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:35.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.797][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.798][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:35.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:35.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.802][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.803][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:35.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:35.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.806][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.811][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.816][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:35.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.821][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:35.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:35.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.826][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:35.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:35.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.831][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:35.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:35.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.835][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:35.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:35.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.840][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:35.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:35.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.845][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:35.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:35.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.850][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:35.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:35.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.855][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:35.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:35.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.860][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:35.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:35.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.864][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.866][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.869][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.871][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.874][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.875][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:35.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.879][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.884][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.889][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:35.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.894][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.899][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.903][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:35.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.908][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:35.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:35.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.913][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.914][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:35.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:35.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.918][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.919][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:35.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:35.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.923][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:35.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:35.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.928][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:35.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:35.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.933][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:35.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.937][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.939][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:35.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:35.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.943][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:35.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:35.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.953][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:35.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:35.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.958][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.965][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...]. biodb.DEBUG[2025-08-09 16:04:35.967][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:35.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:35.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:35.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:35.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:35.978][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:35.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:35.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:35.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:35.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.984][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:35.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:35.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.989][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.990][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:35.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:35.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.993][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.995][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:35.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:35.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:35.998][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:35.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.003][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.008][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.009][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.012][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.017][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.022][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.027][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.031][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.036][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.037][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.042][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.046][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.050][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.055][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.060][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.065][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.066][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.069][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.070][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.074][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.079][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.084][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.088][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.093][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.094][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:36.095][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:36.097][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:36.098][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:36.099][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:36.100][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:36.101][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:36.103][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.104][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.105][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:36.106][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:36.107][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.108][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.110][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.111][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.112][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.113][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.114][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.116][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.117][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.118][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.119][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.120][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.121][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.122][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.124][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.125][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.126][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.127][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.128][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.130][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.131][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.132][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.133][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.134][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.135][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.136][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.138][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.139][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.140][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.141][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.142][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.144][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.145][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.146][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.147][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.148][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.149][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.151][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.152][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.153][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.154][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.155][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.156][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:36.158][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:36.159][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.160][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.161][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:36.162][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:36.164][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.165][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.166][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.167][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.168][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.169][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.171][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.172][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.173][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.174][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.175][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.177][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.178][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.179][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.180][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.181][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.182][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.184][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.185][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.186][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.187][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.188][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.189][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.191][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.192][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.193][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.194][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.195][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.197][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.198][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.199][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.200][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.201][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.202][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.203][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.205][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.206][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.207][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.208][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.209][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.211][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.212][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.213][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:36.214][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:36.215][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:36.217][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:36.218][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.219][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.220][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:36.221][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:36.222][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.224][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.225][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.226][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.227][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.228][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.229][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.231][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.232][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.233][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.234][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.235][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.236][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.238][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.239][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.240][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.241][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.242][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.244][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.245][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.246][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.247][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.248][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.250][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.251][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.252][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.253][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.254][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.256][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.257][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.258][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.259][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.260][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.261][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.263][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.264][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.265][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.266][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.267][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:36.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:36.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:36.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.272][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:36.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:36.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.277][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:36.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:36.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.288][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.289][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:36.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:36.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.293][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:36.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:36.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.298][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.299][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:36.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:36.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.302][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.307][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.312][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.317][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.322][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.326][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.331][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.336][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.341][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.346][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.350][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.355][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.360][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.365][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.370][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.379][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.389][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.394][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.399][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.400][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.403][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.408][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.413][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.418][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.423][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.428][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.439][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...]. biodb.DEBUG[2025-08-09 16:04:36.440][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:36.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:36.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:36.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:36.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:36.451][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:36.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:36.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:36.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:36.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:36.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:36.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.462][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.464][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:36.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:36.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.467][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.468][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:36.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:36.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.472][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.477][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.481][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.486][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.496][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.501][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.505][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.510][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.511][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.515][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.516][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.520][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.525][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.534][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.539][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.540][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.544][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.549][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.553][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.563][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.568][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.569][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:36.570][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:36.571][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:36.572][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:36.574][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:36.575][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:36.576][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:36.577][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.578][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.579][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:36.581][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:36.582][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.583][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.584][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.585][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.587][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.588][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.589][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.590][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.591][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.592][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.594][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.595][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.596][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.597][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.598][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.600][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.601][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.602][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.603][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.604][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.605][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.607][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.608][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.609][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.620][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.621][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.622][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.624][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.625][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.626][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.627][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.629][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.630][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.631][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.632][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.633][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.635][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.636][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.637][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.638][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.639][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.640][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.642][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:36.643][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:36.644][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.645][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.646][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:36.647][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:36.649][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.650][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.651][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.652][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.653][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.654][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.656][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.657][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.658][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.659][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.660][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.661][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.663][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.664][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.665][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.666][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.667][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.668][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.669][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.671][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:36.672][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.673][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.674][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.675][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.676][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.678][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.679][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.680][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.681][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.682][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.683][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.685][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.686][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.687][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.688][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.689][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.690][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.691][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.693][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.694][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.695][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.696][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.697][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:36.699][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:36.700][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:36.701][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:36.702][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.703][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.704][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:36.706][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:36.707][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.708][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.709][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.710][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.711][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.713][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.714][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.715][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.716][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.717][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.718][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.720][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.721][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.722][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.723][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.724][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.725][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.726][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.728][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.729][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.730][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.731][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.732][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.734][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.735][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.736][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.737][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.738][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.740][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.742][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.744][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.745][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.746][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.747][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.748][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.750][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.751][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.752][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.753][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:36.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:36.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:36.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.758][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:36.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:36.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.763][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:36.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:36.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.768][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.769][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:36.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:36.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.773][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.774][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:36.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:36.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.779][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:36.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:36.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.782][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.787][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.792][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:36.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.797][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.798][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.806][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.808][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:36.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.811][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.816][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.821][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:36.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.831][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.836][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:36.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:36.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.840][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.845][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.850][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.855][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.860][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.865][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:36.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.870][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.875][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.876][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.879][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.881][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:36.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:36.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.884][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.889][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.894][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:36.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:36.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.899][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.904][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.909][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:36.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:36.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.913][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.920][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...]. biodb.DEBUG[2025-08-09 16:04:36.921][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:36.922][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:36.931][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:36.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:36.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:36.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:36.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:36.941][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:36.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:36.946][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:36.954][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:36.957][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content. sched.DEBUG[2025-08-09 16:04:36.959][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:36.961][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:36.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:36.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:36.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:36.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:36.972][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:36.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:36.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:36.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:36.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:36.988][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:04:36.990][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:36.993][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:36.995][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content. sched.DEBUG[2025-08-09 16:04:36.997][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:36.999][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:37.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:37.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:37.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:37.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:37.010][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:37.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:37.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.016][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.021][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.026][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:37.027][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:37.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:37.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:37.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:37.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:37.038][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:37.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:37.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.044][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.049][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.054][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:37.055][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:37.057][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:37.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:37.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:37.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:37.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:37.068][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:37.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:37.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.074][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.079][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.080][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.083][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.085][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.088][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.093][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.098][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.103][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.107][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.112][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.117][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.122][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.128][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.131][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.133][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.136][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.141][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.146][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.150][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.155][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.156][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:37.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:37.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.160][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:37.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:37.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:37.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:37.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.170][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:37.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:37.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.174][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:37.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:37.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.179][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:37.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:37.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.184][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.189][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.190][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.194][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.195][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:37.196][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:37.197][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:37.198][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:37.199][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:37.201][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.202][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.203][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.204][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.205][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.207][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.208][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.209][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.210][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.211][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.212][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.214][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.215][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.216][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.217][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.218][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.219][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.221][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.222][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.223][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.224][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.225][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.226][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.228][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.229][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.230][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.231][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.232][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.233][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.235][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.236][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.237][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.238][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.239][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.241][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.242][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.243][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:37.244][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:37.245][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.246][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.247][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:37.249][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:37.250][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.251][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.252][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:37.253][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:37.255][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.256][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.257][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.258][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.259][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.260][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.262][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.263][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.264][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.265][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.266][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.268][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.269][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.270][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.271][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.272][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.273][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.275][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.276][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.277][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.278][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.279][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.280][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.282][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.283][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.284][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.285][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.286][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.288][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.289][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.290][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.297][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.298][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.300][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.301][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.303][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.304][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.305][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.306][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.307][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.308][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.310][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.311][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:37.312][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:37.313][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.314][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.315][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:37.317][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:37.318][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.319][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.320][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:37.321][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:37.322][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.324][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.325][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.326][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.327][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.328][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.329][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:37.331][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:37.332][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.333][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.334][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.335][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.336][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.338][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.339][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.340][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.341][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.342][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.343][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.345][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.346][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.347][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.348][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.349][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.350][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.352][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.353][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.354][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.355][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.356][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.357][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.358][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.360][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.361][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.362][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.363][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.364][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.366][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.367][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.368][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.369][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:37.370][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:37.371][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.372][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.374][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:37.375][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:37.376][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.377][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.378][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:37.380][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:37.381][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.382][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.383][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:37.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.388][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.393][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.397][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.399][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.402][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.407][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.408][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.412][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.417][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.421][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.426][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.428][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.431][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.436][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.441][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.446][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.450][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.455][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.460][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.465][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.470][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.475][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.479][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.484][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.489][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.494][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.499][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.500][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:37.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:37.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.504][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.505][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:37.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:37.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.508][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.510][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:37.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:37.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:37.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:37.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.518][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:37.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:37.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.523][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:37.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:37.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.528][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:37.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:37.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.533][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:37.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:37.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:37.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:37.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.542][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.548][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...]. biodb.DEBUG[2025-08-09 16:04:37.550][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:37.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:37.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:37.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:37.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:37.561][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:37.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:37.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.572][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.573][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.577][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.578][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.582][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.586][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.591][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.601][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.606][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.611][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.615][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.620][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.621][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.625][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.632][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.637][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.642][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.647][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.651][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.656][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.657][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:37.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:37.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.661][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.662][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:37.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:37.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.666][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:37.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:37.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.671][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:37.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:37.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.675][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:37.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:37.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.680][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:37.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:37.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.685][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.686][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.690][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.691][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.694][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.696][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:37.697][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:37.698][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:37.699][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:37.700][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:37.701][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.703][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.704][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.705][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.706][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.707][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.709][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.710][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.711][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.712][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.713][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.714][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.716][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.717][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.718][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.719][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.720][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.722][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.723][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.724][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.725][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.727][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.728][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.729][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.731][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.732][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.733][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.734][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.735][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.737][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.738][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.739][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.740][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.741][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.742][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.743][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.745][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:37.746][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:37.747][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.748][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.749][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:37.751][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:37.752][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.753][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.754][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:37.755][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:37.757][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.758][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.759][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.761][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.762][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.764][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.765][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.766][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.767][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.768][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.770][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.771][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.772][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.773][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.774][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.776][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.777][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.778][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.779][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.780][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.781][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.783][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.784][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.785][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.786][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.787][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.789][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.790][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.791][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.792][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.793][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.794][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.796][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.797][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.798][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.799][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.800][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.801][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.803][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.804][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.805][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.806][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.807][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:37.809][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:37.810][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.811][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.812][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:37.813][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:37.814][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.815][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.817][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:37.818][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:37.819][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.820][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.821][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.823][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:37.824][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.825][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.826][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:37.827][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:37.828][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.830][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.831][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.832][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.833][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.834][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.835][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.836][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.838][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.839][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.840][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.841][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.842][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.844][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.845][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.846][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.847][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.848][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.849][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.851][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.852][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.853][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.854][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.855][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.856][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.858][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.859][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.860][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.861][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.862][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.864][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.865][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.866][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.867][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:37.868][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.869][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.871][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:37.872][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:37.873][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.874][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.875][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:37.876][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:37.878][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.879][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.880][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:37.881][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:37.882][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.883][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.885][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:37.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.890][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.894][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:37.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:37.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.899][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.904][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.905][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.909][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.910][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:37.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:37.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.914][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.919][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.923][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:37.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.928][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.933][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.938][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:37.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:37.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.943][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.948][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.952][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:37.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:37.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.957][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.968][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.974][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:37.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:37.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.980][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.983][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.985][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.988][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.989][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:37.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.993][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:37.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:37.998][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:37.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.003][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.008][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.013][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.017][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.022][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.024][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:38.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:38.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.027][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.029][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:38.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:38.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.032][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.033][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:38.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:38.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.037][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:38.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:38.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.042][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:38.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:38.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.047][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:38.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:38.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.051][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:38.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:38.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.056][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:38.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:38.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.061][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:38.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:38.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.066][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.073][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...]. biodb.DEBUG[2025-08-09 16:04:38.074][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:38.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:38.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:38.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:38.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:38.085][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:38.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:38.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:38.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:38.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.092][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:38.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:38.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.096][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:38.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:38.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.101][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.102][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:38.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:38.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.106][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.111][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.116][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:38.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:38.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.121][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:38.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:38.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.125][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:38.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:38.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.130][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:38.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:38.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.140][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:38.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:38.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.145][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.146][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:38.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:38.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.149][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.151][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:38.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:38.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.154][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.159][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.164][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.169][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.173][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.175][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:38.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:38.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.178][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.179][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:38.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:38.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.183][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:38.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:38.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.188][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:38.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:38.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.193][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:38.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:38.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.197][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:38.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:38.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.202][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.203][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:38.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:38.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.207][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.208][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:38.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:38.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.212][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.213][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:38.214][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:38.215][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:38.216][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:38.218][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:38.219][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:38.220][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:38.221][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.222][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.223][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:38.225][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:38.226][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.227][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.228][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.229][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.231][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.232][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.233][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:38.234][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:38.235][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.236][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.237][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:38.239][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:38.240][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.241][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.242][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:38.243][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:38.245][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.246][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.247][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:38.248][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:38.249][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.250][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.252][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.253][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.254][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.255][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.256][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.257][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.259][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.260][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.261][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:38.262][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:38.263][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.264][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.266][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:38.267][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:38.268][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.269][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.270][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:38.272][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:38.273][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.274][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.275][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:38.276][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:38.277][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.279][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.280][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:38.281][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:38.282][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.283][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.284][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:38.286][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:38.287][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.288][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.289][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.290][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.292][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.293][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.294][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:38.295][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:38.296][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.303][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.305][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:38.306][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:38.308][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.309][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.310][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:38.312][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:38.313][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.314][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.315][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:38.316][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:38.317][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.319][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.320][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.321][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.322][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.323][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.324][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.326][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.327][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.328][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.329][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:38.330][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:38.332][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.333][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.334][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:38.335][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:38.336][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.337][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.339][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:38.340][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:38.341][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.342][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.343][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:38.344][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:38.346][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.347][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.348][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:38.349][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:38.350][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:38.352][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:38.353][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.354][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.355][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:38.356][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:38.357][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.358][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.360][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.361][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.362][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.363][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.364][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:38.365][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:38.367][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.368][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.369][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:38.370][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:38.371][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.372][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.373][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:38.375][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:38.376][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.377][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.378][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.379][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.381][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.382][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.383][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.384][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.385][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.386][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.388][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:38.389][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:38.390][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.391][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.392][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:38.394][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:38.395][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.396][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.397][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:38.398][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:38.399][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.400][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.402][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:38.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:38.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:38.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.407][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:38.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:38.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.411][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:38.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:38.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.416][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.418][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:38.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:38.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.421][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.422][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:38.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:38.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.426][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.427][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:38.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:38.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.431][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.436][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.440][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.445][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:38.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:38.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.450][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:38.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:38.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.455][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:38.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:38.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.460][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:38.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:38.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.465][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:38.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:38.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.470][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:38.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:38.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.475][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:38.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:38.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.480][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:38.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:38.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.484][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:38.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:38.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.489][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.494][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.499][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.504][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.509][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.518][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.519][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:38.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:38.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.523][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.524][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:38.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:38.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.528][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.529][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:38.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:38.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.533][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:38.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:38.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.538][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:38.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:38.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.542][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:38.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:38.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.547][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:38.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:38.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.552][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:38.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:38.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.557][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:38.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:38.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.562][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.568][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...]. biodb.DEBUG[2025-08-09 16:04:38.569][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:38.570][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:38.574][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:38.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:38.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:38.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:38.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:38.585][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:38.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:38.589][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:38.592][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:38.594][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content. sched.DEBUG[2025-08-09 16:04:38.595][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:38.598][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:38.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:38.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:38.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:38.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:38.609][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:38.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:38.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.615][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.620][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.625][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:38.626][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:38.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:38.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:38.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:38.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:38.652][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:38.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:38.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.659][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.664][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.669][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:04:38.671][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:38.674][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:38.677][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content. sched.DEBUG[2025-08-09 16:04:38.678][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:38.681][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:38.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:38.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:38.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:38.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:38.692][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:38.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:38.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.698][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.703][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:38.709][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:38.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:38.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:38.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:38.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:38.720][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:38.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:38.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.726][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.733][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.739][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:38.741][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:38.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:38.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:38.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:38.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:38.752][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:38.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:38.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.758][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.763][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:38.769][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:38.771][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:38.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:38.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:38.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:38.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:38.782][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:38.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:38.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:38.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.788][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:38.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:38.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.793][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:38.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:38.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.798][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:38.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:38.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.803][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.808][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.812][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:38.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:38.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.817][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:38.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:38.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.822][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:38.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:38.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.827][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:38.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:38.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.832][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:38.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:38.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.836][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:38.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:38.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.841][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.842][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:38.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:38.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.846][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.847][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:38.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:38.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.851][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.856][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.860][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.865][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.870][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:38.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:38.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.875][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.876][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:38.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:38.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.880][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:38.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:38.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.885][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:38.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:38.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.889][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:38.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:38.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.894][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:38.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:38.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.899][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.900][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:38.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:38.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.904][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.905][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:38.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:38.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.908][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.910][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:38.911][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:38.912][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:38.913][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:38.914][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:38.916][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:38.917][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:38.918][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.919][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.920][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:38.921][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:38.923][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.924][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.925][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.926][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.927][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.928][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.930][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:38.931][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:38.932][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.933][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.934][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:38.936][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:38.937][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.938][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.939][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:38.940][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:38.941][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.943][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.944][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:38.945][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:38.946][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.947][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.948][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.950][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:38.951][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.952][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.953][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.954][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:38.956][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.957][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.958][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:38.959][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:38.960][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.961][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.963][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:38.964][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:38.965][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.966][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.967][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:38.969][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:38.970][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.971][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.972][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:38.973][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:38.974][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.976][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.977][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:38.978][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:38.979][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.980][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.982][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:38.983][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:38.984][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.985][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.986][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.988][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:38.989][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:38.990][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:38.997][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:38.999][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.000][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.002][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.003][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.004][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.005][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.007][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.008][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.009][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.010][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.011][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.012][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.014][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.015][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.016][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.017][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.018][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.020][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.021][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.022][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.023][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.024][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.025][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.027][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.028][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.029][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.030][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.031][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.032][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.034][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.035][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.036][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.037][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.038][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.039][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.041][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:39.042][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:39.043][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.044][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.045][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:39.046][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:39.048][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.049][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.050][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.051][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.052][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.054][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.055][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.056][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.057][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.058][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.059][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.060][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.062][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.063][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.064][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.065][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.066][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.068][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.069][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.070][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.071][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.072][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.073][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.075][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.076][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.077][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.078][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.079][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.081][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.082][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.083][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.084][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.085][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.086][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.088][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.089][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.090][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.091][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.092][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.093][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.095][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.096][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.097][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.098][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.099][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.100][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.102][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.103][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.104][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:39.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.109][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.114][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.119][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.120][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.124][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.125][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.128][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.130][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.133][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.138][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.143][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.148][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.149][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.153][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.158][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.163][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.167][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.172][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.177][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.182][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.187][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.192][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.193][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.196][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.198][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.201][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.202][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.206][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.211][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.216][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.220][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.225][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.230][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.235][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.240][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.241][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.245][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.249][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.254][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.259][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.264][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.269][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.274][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.285][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...]. biodb.DEBUG[2025-08-09 16:04:39.286][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:39.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:39.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:39.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:39.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:39.298][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:39.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.304][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.309][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.314][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.315][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.318][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.323][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.335][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.340][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.345][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.350][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.355][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.360][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.366][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.369][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.370][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.374][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.383][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.388][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.393][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.394][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.398][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.399][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.402][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.407][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.412][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.417][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.421][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:39.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:39.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.426][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.427][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:39.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:39.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.431][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.432][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:39.433][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:39.434][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:39.435][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:39.436][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:39.438][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.439][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.440][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.441][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.442][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.444][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.445][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.446][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.447][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.448][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.449][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.451][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.452][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.453][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.454][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.455][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.456][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.458][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.459][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.460][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.461][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.462][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.464][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.465][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.466][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.467][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.468][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.469][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.471][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.472][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.473][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.474][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.475][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.477][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.478][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.479][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.480][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.481][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.482][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.484][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.485][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.486][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.487][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.488][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.489][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.491][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.492][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.493][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.494][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:39.495][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:39.497][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.498][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.499][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.500][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.501][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.502][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.504][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.505][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.506][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.507][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.508][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.510][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.511][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.512][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.513][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.514][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.516][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.517][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.518][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.519][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.520][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.521][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.523][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.524][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.525][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.526][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.527][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.529][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.530][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.531][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.532][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.533][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.534][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.536][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.537][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.538][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.539][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.540][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.542][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.543][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.544][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.545][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.546][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.548][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.549][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.550][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.551][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.552][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.553][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.555][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.556][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:39.557][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:39.558][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.559][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.561][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:39.562][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:39.563][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.564][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.565][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.566][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.568][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.569][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.570][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.571][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.572][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.574][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.575][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.576][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.577][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.578][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.579][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.581][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.582][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.583][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.584][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.585][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.586][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.588][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.589][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.590][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.591][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.592][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.594][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.595][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.596][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.597][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.598][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.599][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.601][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.602][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.603][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.604][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.605][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.607][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.608][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.609][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.610][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.611][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.612][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.614][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.615][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.616][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.617][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.618][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.620][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:39.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.625][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.629][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.634][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.636][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.639][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.644][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.649][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.654][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.659][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.670][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.675][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.680][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.690][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.695][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.705][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.714][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.716][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.719][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.720][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.724][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.725][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.729][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.736][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.743][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.750][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.757][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.764][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.769][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.771][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.774][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.775][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.779][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.780][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.784][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.788][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.793][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.798][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.803][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.808][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.813][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.819][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...]. biodb.DEBUG[2025-08-09 16:04:39.821][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:39.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:39.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:39.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:39.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:39.832][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:39.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:39.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.838][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.843][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.844][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.848][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.849][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.852][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.857][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.862][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.867][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.871][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.876][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.881][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.886][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.891][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.892][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.895][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.897][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.900][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.905][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.910][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.915][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:39.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.919][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.921][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.924][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.925][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:39.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:39.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.929][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.930][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.934][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:39.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:39.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.938][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.943][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:39.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:39.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.948][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.949][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:39.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:39.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.953][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.954][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:39.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:39.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.958][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.959][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:39.960][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:39.961][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:39.962][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:39.963][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:39.965][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:39.966][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:39.967][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.968][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.969][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:39.971][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:39.972][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.973][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.974][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.975][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:39.976][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.977][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.979][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:39.980][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:39.981][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.982][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.983][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:39.985][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:39.986][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.987][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.988][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:39.989][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:39.990][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.992][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.993][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.994][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:39.995][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:39.996][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:39.997][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:39.999][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.000][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.001][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.002][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.003][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.011][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.012][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.013][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:40.015][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:40.016][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.017][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.018][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:40.020][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:40.021][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.022][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.023][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:40.024][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:40.025][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.027][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.028][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:40.029][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:40.030][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.031][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.032][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:40.034][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:40.035][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.036][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.037][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:40.038][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:40.039][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.041][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.042][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.043][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.044][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.045][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.046][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:40.048][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:40.049][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.050][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.051][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:40.052][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:40.053][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.054][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.056][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:40.057][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:40.058][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.059][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.060][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:40.061][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:40.063][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.064][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.065][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.066][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.067][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.068][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.069][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.071][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.072][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.073][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.074][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:40.075][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:40.076][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.078][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.079][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:40.080][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:40.081][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.082][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.083][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:40.085][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:40.086][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.087][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.088][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:40.089][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:40.090][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.092][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.093][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:40.094][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:40.095][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:40.096][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:40.097][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.099][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.100][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:40.101][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:40.102][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.103][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.104][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.106][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.107][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.108][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.109][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:40.110][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:40.111][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.112][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.114][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:40.115][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:40.116][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.117][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.118][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:40.119][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:40.121][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.122][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.123][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.124][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.125][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.126][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.128][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.129][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.130][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.131][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.132][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:40.134][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:40.135][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.136][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.137][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:40.138][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:40.139][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.140][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.142][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:40.143][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:40.144][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.145][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.146][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:40.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:40.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:40.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.151][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:40.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:40.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.156][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:40.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:40.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.161][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.162][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:40.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:40.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.166][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.167][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:40.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:40.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.171][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.172][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:40.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:40.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.176][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.181][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.185][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.190][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:40.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:40.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.195][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.196][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:40.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:40.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.200][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.201][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:40.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:40.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.205][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:40.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:40.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.210][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:40.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:40.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:40.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.219][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:40.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.224][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:40.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:40.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.229][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:40.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:40.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.234][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.243][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.248][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.253][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.258][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.263][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.264][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:40.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:40.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.268][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.269][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:40.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:40.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.273][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.274][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:40.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.277][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:40.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:40.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.282][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:40.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:40.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.287][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:40.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:40.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.292][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:40.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.297][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:40.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:40.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:40.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:40.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.306][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.312][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...]. biodb.DEBUG[2025-08-09 16:04:40.314][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:40.315][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:40.318][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:40.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:40.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:40.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:40.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:40.329][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:40.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:40.339][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:40.343][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:40.345][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content. sched.DEBUG[2025-08-09 16:04:40.346][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:40.349][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:40.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:40.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:40.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:40.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:40.360][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:40.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:40.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.366][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.371][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.376][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:40.377][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:40.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:40.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:40.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:40.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:40.388][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:40.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:40.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.394][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.399][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.404][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:40.405][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:40.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:40.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:40.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:40.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:40.416][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:40.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:40.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.422][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.427][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.432][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:40.433][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:40.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:40.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:40.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:40.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:40.444][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:40.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:40.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.450][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.455][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.459][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:40.461][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:40.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:40.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:40.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:40.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:40.472][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:40.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:40.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.478][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.483][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.488][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:40.489][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:40.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:40.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:40.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:40.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:40.500][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:40.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:40.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.506][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.511][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.516][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:40.517][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:40.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:40.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:40.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:40.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:40.529][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:40.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:40.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.535][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.540][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.545][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:40.547][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:40.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:40.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:40.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:40.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:40.558][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:40.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:40.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.565][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.570][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.575][self$getBiodb()$getEntryFields()$get] fields variable is a list. sched.DEBUG[2025-08-09 16:04:40.577][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:40.580][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:40.582][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content. sched.DEBUG[2025-08-09 16:04:40.584][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:40.586][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:40.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:40.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:40.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:40.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:40.598][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:40.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:40.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.604][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.609][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.614][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:40.616][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:40.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:40.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:40.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:40.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:40.627][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:40.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:40.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.634][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.639][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.644][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:40.645][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:40.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:40.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:40.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:40.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:40.657][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:40.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:40.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.669][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.674][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:40.675][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:40.677][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:40.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:40.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:40.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:40.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:40.688][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:40.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:40.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:40.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:40.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.695][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:40.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:40.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.707][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.708][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:40.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:40.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.713][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:40.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:40.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.718][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.723][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.727][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:40.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:40.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.733][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.735][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:40.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:40.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.740][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:40.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:40.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.746][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:40.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:40.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.751][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:40.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:40.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.756][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:40.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:40.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.761][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.762][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:40.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:40.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.765][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.767][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:40.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:40.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.770][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.775][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.780][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.785][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.790][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.791][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:40.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:40.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.795][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.796][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:40.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:40.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.799][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:40.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:40.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:40.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:40.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:40.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:40.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.814][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:40.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:40.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.819][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:40.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.824][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:40.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:40.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.830][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:40.831][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:40.832][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:40.833][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:40.835][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:40.836][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:40.837][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:40.838][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.839][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.841][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:40.842][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:40.843][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.844][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.845][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.847][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.848][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.849][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.850][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:40.851][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:40.853][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.854][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.855][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:40.856][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:40.857][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.859][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.860][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:40.861][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:40.862][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.863][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.864][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:40.866][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:40.867][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.868][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.869][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.871][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.872][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.873][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.874][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.875][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.876][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.878][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.879][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:40.880][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:40.881][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.882][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.884][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:40.885][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:40.886][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.887][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.888][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:40.890][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:40.891][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.892][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.893][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:40.894][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:40.896][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.897][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.898][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:40.899][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:40.900][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.901][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.903][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:40.904][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:40.905][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.906][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.907][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.909][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.910][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.911][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.912][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:40.913][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:40.914][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.916][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.917][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:40.918][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:40.919][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.920][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.921][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:40.923][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:40.924][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.925][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.926][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:40.927][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:40.929][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.930][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.931][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.932][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.933][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.934][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.936][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.937][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:40.938][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.939][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.940][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:40.942][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:40.943][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.944][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.945][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:40.946][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:40.947][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.948][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.950][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:40.951][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:40.952][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.953][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.954][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:40.956][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:40.957][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.958][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.959][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:40.960][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:40.962][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:40.963][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:40.964][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.965][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.966][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:40.968][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:40.969][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.970][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.971][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.972][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:40.973][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.974][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.976][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:40.977][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:40.978][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.979][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.980][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:40.982][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:40.983][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.984][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.985][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:40.986][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:40.987][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.989][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.990][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:40.991][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:40.992][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.993][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.994][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.996][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:40.997][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:40.998][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:40.999][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.000][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.002][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.003][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.004][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.005][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.006][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.007][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.009][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.010][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.011][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.012][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.013][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.015][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.016][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.017][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.018][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:41.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.023][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.028][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.033][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.034][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.038][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.039][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.049][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.054][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.059][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.064][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.068][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.073][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.078][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.083][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.088][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.093][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.097][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.102][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.107][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.112][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.113][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.116][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.118][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.121][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.122][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.132][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.137][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.142][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.147][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.151][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.156][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.162][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.166][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.167][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.170][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.175][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.180][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.185][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.190][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.195][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.200][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...]. biodb.DEBUG[2025-08-09 16:04:41.208][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:41.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:41.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:41.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:41.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:41.220][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:41.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:41.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.226][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.231][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.232][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.235][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.237][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.240][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.245][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.250][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.255][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.260][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.264][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.269][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.274][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.279][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.280][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.284][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.285][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.289][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.294][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.303][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.308][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.313][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.318][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.322][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.327][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.332][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.337][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.338][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.342][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.343][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.347][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.348][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:41.349][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:41.350][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:41.351][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:41.353][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:41.354][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.355][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.356][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.357][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.359][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.360][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.361][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.362][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.363][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.365][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.366][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.367][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.368][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.369][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.370][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.372][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.373][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.380][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.381][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.383][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.384][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.386][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.387][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.388][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.389][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.390][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.392][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.393][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.394][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.395][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.396][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.397][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.399][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.400][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.401][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.402][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.403][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.405][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.406][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.407][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.408][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.409][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.410][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.412][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.413][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.414][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.415][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.416][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.417][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.419][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.420][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.421][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.422][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.423][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.424][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.426][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.427][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.428][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.429][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.430][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.431][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.433][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.434][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.435][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.436][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.437][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.438][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.440][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.441][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.442][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.443][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.444][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.445][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.447][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.448][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.449][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.450][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.451][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.452][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.453][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.455][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.456][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.457][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.458][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.459][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.460][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.462][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.463][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.464][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.465][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.466][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.467][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.468][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.470][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.471][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.472][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.473][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.474][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.475][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.477][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.478][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.479][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.480][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.481][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.482][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:41.484][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:41.485][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.486][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.487][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.488][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.489][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.491][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.492][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.493][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.494][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.495][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.496][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.497][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.499][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.500][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.501][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.502][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.503][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.505][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.506][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.507][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.508][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.509][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.510][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.511][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.513][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.514][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.515][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.516][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.517][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.519][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.520][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.521][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.522][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.523][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.524][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.526][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.527][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.528][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.529][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.530][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.531][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.533][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.534][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.535][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.536][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:41.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.546][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.551][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.552][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.556][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.557][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.560][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.562][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.565][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.570][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.575][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.580][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.585][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.589][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.594][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.599][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.604][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.609][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.614][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.618][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.623][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.628][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.633][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.638][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.643][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.647][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.652][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.657][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.658][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.663][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.665][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.670][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.676][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.681][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.686][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.687][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.691][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.695][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.700][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.713][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...]. biodb.DEBUG[2025-08-09 16:04:41.714][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:41.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:41.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:41.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:41.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:41.726][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:41.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:41.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.732][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.737][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.739][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.743][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.744][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.747][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.752][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.757][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.758][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.762][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.766][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.771][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.776][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.781][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.785][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.787][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.790][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.791][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.795][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.800][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.814][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.815][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.819][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.820][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.823][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.828][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.833][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.838][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.842][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.844][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.847][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.848][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.852][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.853][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:41.854][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:41.856][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:41.857][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:41.858][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:41.859][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.860][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.862][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.863][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.864][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.865][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.866][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.867][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.869][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.870][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.871][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.872][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.873][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.875][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.876][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.877][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.878][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.879][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.881][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.882][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.883][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.884][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.885][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.886][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.888][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.889][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.890][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.891][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.892][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.894][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.895][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.896][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.897][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.898][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.899][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.900][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.902][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.903][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.904][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.905][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.906][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.908][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.909][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.910][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.911][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.912][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.913][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.914][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.916][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.917][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.918][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.919][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.920][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.922][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.923][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.924][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.925][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.926][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.927][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.929][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.930][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.931][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.932][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.933][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.934][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.936][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:41.937][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.938][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.939][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:41.940][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:41.941][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.943][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.944][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:41.945][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:41.946][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.947][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.948][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.950][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:41.951][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.952][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.953][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.954][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:41.956][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.957][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.958][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.959][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:41.960][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.961][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.963][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:41.964][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:41.965][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.966][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.967][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:41.969][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:41.970][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.971][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.972][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:41.973][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:41.974][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.976][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.977][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.978][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:41.979][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.980][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.981][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:41.983][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:41.984][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:41.985][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:41.986][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.987][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.989][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:41.990][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:41.991][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.992][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.993][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.995][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:41.996][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:41.997][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:41.998][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:41.999][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:42.000][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.001][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.003][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:42.004][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:42.005][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.006][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.007][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:42.009][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:42.010][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.011][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.012][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.013][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.015][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.016][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.017][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.018][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.019][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.020][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.022][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:42.023][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:42.024][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.025][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.026][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:42.028][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:42.029][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.030][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.031][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:42.032][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:42.033][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.035][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.036][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:42.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:42.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:42.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.047][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:42.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.053][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:42.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:42.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.058][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.059][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:42.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:42.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.063][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.064][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:42.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:42.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.068][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.069][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:42.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:42.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.072][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.077][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.087][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:42.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:42.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.092][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:42.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:42.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.096][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:42.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:42.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.101][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:42.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:42.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.106][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:42.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:42.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.111][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:42.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:42.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.116][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:42.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:42.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.120][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:42.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:42.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.125][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:42.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:42.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.130][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.140][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.144][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.149][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.154][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.159][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.160][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:42.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:42.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.164][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.165][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:42.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:42.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.168][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.170][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:42.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:42.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.173][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:42.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:42.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.178][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:42.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:42.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.183][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:42.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:42.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.188][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:42.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:42.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.193][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:42.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:42.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.197][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:42.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:42.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.202][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.208][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...]. biodb.DEBUG[2025-08-09 16:04:42.210][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:42.211][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.TRACE[2025-08-09 16:04:42.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.221][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.225][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.230][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.235][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.240][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.245][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.250][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.259][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.264][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.269][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.274][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:42.278][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:42.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:42.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:42.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:42.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:42.289][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:42.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:42.293][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:42.296][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:42.298][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/2e865a03592d6effdf242ff63104f35a.content. sched.DEBUG[2025-08-09 16:04:42.299][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. sched.DEBUG[2025-08-09 16:04:42.303][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:42.306][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:42.308][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/f0c73645ca32490f91d503a462d812b2.content. sched.DEBUG[2025-08-09 16:04:42.309][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:42.312][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:42.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:42.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:42.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:42.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:42.323][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:42.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:42.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.329][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.334][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.339][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:42.340][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:42.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:42.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:42.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:42.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:42.352][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:42.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:42.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.358][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.363][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.367][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:42.369][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:42.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:42.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:42.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:42.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:42.386][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:42.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:42.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.394][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.398][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.403][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:42.405][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:42.406][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:42.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:42.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:42.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:42.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:42.418][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:42.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:42.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:42.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:42.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.424][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:42.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:42.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.428][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:42.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:42.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.433][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.434][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:42.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:42.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.438][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.443][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.448][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.449][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:42.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:42.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.452][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:42.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:42.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.457][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:42.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:42.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.462][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:42.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:42.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.467][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:42.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:42.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.471][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:42.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:42.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.476][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.477][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.481][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.482][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.486][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.490][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.495][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.500][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.505][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.506][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:42.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:42.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.509][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.511][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:42.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.514][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:42.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:42.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.519][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.520][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:42.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:42.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.524][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:42.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:42.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.529][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:42.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:42.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.533][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.535][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:42.536][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:42.537][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:42.538][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:42.539][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:42.540][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:42.542][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:42.543][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.544][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.545][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:42.546][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:42.548][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.549][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.550][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.551][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.552][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.553][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.555][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:42.556][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:42.557][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.558][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.559][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:42.561][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:42.562][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.563][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.564][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:42.565][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:42.566][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.568][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.569][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.570][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.571][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.572][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.573][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.575][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.576][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.577][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.578][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.579][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.581][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.582][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.583][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:42.584][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:42.585][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.586][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.588][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:42.589][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:42.590][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.591][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.592][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:42.594][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:42.595][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.596][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.597][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:42.598][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:42.599][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.601][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.602][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:42.603][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:42.604][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.605][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.606][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.608][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.609][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.610][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.611][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:42.612][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:42.613][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.615][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.616][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:42.617][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:42.618][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.619][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.620][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:42.622][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:42.623][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.624][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.625][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.626][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.628][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.629][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.630][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.631][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.632][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.633][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.635][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.636][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.637][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.638][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.639][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:42.641][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:42.642][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.643][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.644][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:42.645][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:42.646][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.648][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.649][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:42.650][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:42.651][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.652][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.653][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:42.655][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:42.656][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:42.657][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:42.658][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.659][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.661][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:42.662][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:42.663][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.664][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.665][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.666][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.668][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.669][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.670][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:42.671][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:42.672][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.673][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.675][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:42.676][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:42.677][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.678][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.679][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:42.681][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:42.682][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.683][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.684][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.685][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.686][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.688][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.689][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.690][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.691][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.692][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.694][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.695][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.696][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.697][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.698][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:42.700][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:42.701][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.702][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.703][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:42.704][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:42.705][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.707][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.708][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:42.709][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:42.710][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.711][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.713][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:42.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.724][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:42.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:42.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.729][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:42.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.736][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.738][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:42.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.742][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.743][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:42.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:42.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.747][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.748][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:42.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:42.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.751][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.756][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.761][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.766][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:42.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:42.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.771][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:42.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.777][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:42.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.780][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:42.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:42.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.785][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:42.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.790][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:42.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:42.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.794][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:42.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:42.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.799][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:42.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:42.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:42.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:42.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.810][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.814][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.815][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.819][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.820][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.823][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.828][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.833][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.838][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.843][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.848][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.854][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:42.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:42.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.857][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.859][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:42.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:42.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.862][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:42.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:42.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:42.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.877][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:42.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.882][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:42.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:42.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.887][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:42.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:42.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.891][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:42.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:42.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.896][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.903][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...]. biodb.DEBUG[2025-08-09 16:04:42.905][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:42.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:42.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:42.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:42.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:42.916][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:42.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:42.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:42.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:42.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.922][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:42.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:42.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.927][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.928][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:42.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:42.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.932][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.933][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:42.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:42.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.937][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:42.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.946][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:42.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:42.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:42.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.961][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:42.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:42.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.966][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:42.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:42.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.970][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:42.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:42.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.975][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.976][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.980][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.981][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:42.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.985][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.990][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:42.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.994][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:42.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:42.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:42.999][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.005][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.009][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.010][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.018][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.023][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.028][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.033][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.034][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:43.035][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:43.036][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:43.038][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:43.039][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:43.040][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:43.041][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:43.042][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.044][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.045][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:43.046][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:43.047][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.048][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.056][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.058][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.059][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.060][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.062][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:43.063][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:43.064][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.065][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.067][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:43.068][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:43.069][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.070][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.071][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:43.073][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:43.074][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.075][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.076][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.077][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.078][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.080][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.081][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.082][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.083][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.084][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.085][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.087][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.088][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.089][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.090][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.091][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.092][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.094][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.095][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.096][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.097][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.098][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.099][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.101][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.102][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.103][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.104][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:43.105][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:43.106][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.107][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.109][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:43.110][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:43.111][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.112][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.113][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.115][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.116][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.117][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.118][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:43.119][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:43.120][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.121][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.123][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:43.124][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:43.125][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.126][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.127][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:43.128][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:43.130][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.131][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.132][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.133][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.134][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.135][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.137][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.138][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.139][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.140][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.141][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.142][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.144][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.145][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.146][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.147][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.148][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.149][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.150][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.152][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.153][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.154][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.155][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.156][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.157][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.159][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.160][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:43.161][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:43.162][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:43.164][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:43.165][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.166][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.167][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:43.168][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:43.169][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.170][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.172][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.173][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.174][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.175][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.176][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:43.178][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:43.179][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.180][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.181][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:43.182][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:43.183][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.185][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.186][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:43.187][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:43.188][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.189][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.190][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.192][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.193][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.194][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.195][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.196][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.198][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.199][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.200][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.201][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.202][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.203][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.205][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.206][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.207][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.208][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.209][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.211][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.212][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.213][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.214][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.215][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.216][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.218][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.219][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:43.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:43.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:43.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.224][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:43.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:43.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.228][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:43.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:43.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.233][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.235][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:43.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:43.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.239][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:43.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:43.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.243][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.244][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:43.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:43.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.248][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.253][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.257][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.262][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:43.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:43.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.267][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:43.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:43.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.272][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:43.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:43.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.276][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:43.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.281][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:43.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.286][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:43.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:43.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.291][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:43.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:43.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.296][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:43.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:43.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.301][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:43.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:43.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.306][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.307][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.310][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.312][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.315][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.316][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.320][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.325][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.330][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.334][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.339][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.344][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.349][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.350][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.354][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.355][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.359][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.360][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.363][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.368][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.373][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.378][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.390][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.395][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.400][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.407][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...]. biodb.DEBUG[2025-08-09 16:04:43.408][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:43.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:43.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:43.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:43.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:43.419][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:43.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:43.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:43.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:43.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.425][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:43.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:43.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.430][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.431][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:43.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:43.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.435][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:43.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:43.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.439][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.444][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.449][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:43.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:43.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.454][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.455][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:43.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:43.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.458][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:43.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:43.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.463][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:43.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:43.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.468][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:43.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:43.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.472][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:43.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:43.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.477][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.478][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.482][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.483][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.487][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.491][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.496][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.501][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.506][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.507][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.510][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.512][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.515][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.520][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.525][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.529][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.534][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.535][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:43.537][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:43.538][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:43.539][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:43.540][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:43.541][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:43.542][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:43.544][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.545][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.546][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:43.547][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:43.548][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.549][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.551][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.552][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.553][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.554][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.555][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:43.557][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:43.558][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.559][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.560][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:43.561][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:43.562][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.563][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.565][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:43.566][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:43.567][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.568][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.569][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.571][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.572][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.573][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.574][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.575][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.576][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.577][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.579][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.580][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.581][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.582][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.583][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.585][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.586][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.587][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.588][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.589][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.590][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.592][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.593][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.594][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.595][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.596][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.597][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:43.599][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:43.600][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.601][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.602][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:43.603][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:43.605][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.606][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.607][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.608][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.609][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.610][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.612][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:43.613][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:43.614][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.615][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.616][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:43.618][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:43.619][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.620][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.621][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:43.622][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:43.623][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.625][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.626][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.627][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:43.628][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.629][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.630][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.632][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.633][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.634][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.635][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.636][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.638][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.639][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.640][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.641][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.642][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.643][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.645][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.646][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.647][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.648][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.649][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.651][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.652][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.653][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.654][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:43.655][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:43.656][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:43.658][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:43.659][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.660][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.661][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:43.662][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:43.664][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.665][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.666][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.667][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.668][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.669][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.671][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:43.672][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:43.673][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.674][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.675][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:43.676][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:43.678][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.679][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.680][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:43.681][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:43.682][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.683][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.685][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.686][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.687][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.688][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.689][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.691][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.692][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.693][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.694][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.696][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.700][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.701][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.702][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.703][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.704][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.706][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.707][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.708][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.709][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.731][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.733][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:43.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:43.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.740][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:43.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:43.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.745][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:43.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:43.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.750][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.752][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:43.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:43.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.755][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.756][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:43.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:43.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.760][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.761][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:43.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:43.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.765][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.770][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.775][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:43.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.779][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.784][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:43.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:43.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.789][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:43.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:43.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.794][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:43.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:43.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.799][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:43.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.803][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:43.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:43.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.808][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:43.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:43.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.813][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:43.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.818][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.823][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.828][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.832][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:43.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.837][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.842][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.852][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.853][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.857][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.858][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.861][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.863][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:43.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:43.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.866][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.871][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.876][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:43.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:43.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.881][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.886][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.891][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:43.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:43.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.896][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.902][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...]. biodb.DEBUG[2025-08-09 16:04:43.903][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:43.904][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:43.908][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:43.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:43.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:43.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:43.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:43.919][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:43.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:43.923][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:43.926][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:43.929][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content. sched.DEBUG[2025-08-09 16:04:43.930][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:43.933][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:43.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:43.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:43.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:43.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:43.944][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:43.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:43.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.950][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.955][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.960][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:43.961][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:43.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:43.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:43.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:43.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:43.973][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:43.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:43.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.984][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:43.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:43.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:43.989][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:43.990][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:43.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:43.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:43.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:44.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:44.001][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:44.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:44.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.012][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.017][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:44.019][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:44.020][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:44.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:44.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:44.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:44.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:44.032][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:44.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:44.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.038][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.043][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.048][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.049][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.052][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.057][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.062][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.067][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.068][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.078][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.084][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.089][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.093][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.098][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.099][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.103][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.104][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.108][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.112][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.117][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.122][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.128][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.131][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.136][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.137][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.141][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.146][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.150][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.155][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.156][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:44.157][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:44.159][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:44.160][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:44.161][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:44.162][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.163][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.164][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.166][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.167][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.168][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.169][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.170][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.171][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.173][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.174][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.175][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.176][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.177][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.178][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.179][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.181][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.182][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.183][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.184][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.185][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.187][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.188][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.189][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.190][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.191][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.192][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.193][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.195][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.196][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.197][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.198][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.199][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.201][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.202][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.203][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.204][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.205][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.206][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.208][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.209][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.210][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.211][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.212][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.213][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.215][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.216][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.217][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.218][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.219][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.221][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.222][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.223][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.224][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.225][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.226][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.228][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.229][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.230][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.231][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.232][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.234][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.235][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.236][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.237][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.238][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.240][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.241][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.242][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.243][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.244][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.245][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.247][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.248][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.249][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.250][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.251][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.252][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.254][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.255][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.256][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.257][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.258][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.259][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.261][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.262][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.263][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.264][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.265][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.266][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.268][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.269][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.270][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.271][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.272][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.273][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.275][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:44.276][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:44.277][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.278][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.279][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.280][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.282][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.283][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.284][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.285][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.286][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.288][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.289][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.290][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.291][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.292][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.293][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.294][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.296][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.297][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.298][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.299][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.300][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.302][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.303][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.304][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.305][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.306][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.307][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.309][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.310][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.311][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.312][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.313][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.314][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.316][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.317][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.318][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.319][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.320][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.322][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.323][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.324][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.325][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.326][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.327][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.329][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.330][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.331][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.332][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.333][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:44.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.338][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.343][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.348][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.353][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.357][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.359][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.362][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.367][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.372][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.382][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.386][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.391][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.396][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.401][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.412][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.417][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.422][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.427][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.428][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.432][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.433][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.437][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.438][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.441][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.446][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.451][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.456][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.461][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.465][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.470][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.471][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.475][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.476][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.480][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.481][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.484][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.489][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.494][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.499][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.504][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.508][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.513][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.520][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...]. biodb.DEBUG[2025-08-09 16:04:44.521][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:44.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:44.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:44.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:44.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:44.532][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:44.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:44.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.538][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.543][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.548][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.549][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.553][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.558][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.562][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.567][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.572][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.577][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.582][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.586][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.591][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.592][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.596][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.597][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.601][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.606][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.610][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.615][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.620][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.625][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.626][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.629][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.634][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.639][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.644][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.649][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.650][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:44.651][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:44.652][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:44.653][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:44.654][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:44.656][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.657][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.658][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.659][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.660][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.662][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.663][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.664][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.665][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.666][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.667][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.668][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.670][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.671][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.672][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.673][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.674][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.676][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.677][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.678][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.679][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.680][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.681][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.683][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.684][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.685][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.686][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.687][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.688][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.690][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.691][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.692][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.693][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.694][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.696][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.697][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.698][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.699][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.700][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.701][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.703][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.704][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.705][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.706][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.707][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.708][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.710][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.711][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.712][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.713][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.715][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.716][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.717][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.718][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.719][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.720][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.722][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.723][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.724][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.725][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.726][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.728][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.730][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.731][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.732][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.734][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.741][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.743][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.744][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.745][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.747][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.748][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.749][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.750][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:44.751][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.753][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.754][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.755][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.756][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.757][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.758][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.760][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.761][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.762][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.763][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.764][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.766][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.767][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.768][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.769][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.770][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.771][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.773][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.774][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.775][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.776][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.777][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:44.779][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:44.780][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.781][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.782][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.783][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.784][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.786][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.787][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.788][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.789][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.790][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.791][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.792][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.794][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.795][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.796][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.797][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.798][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.800][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.801][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.802][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.803][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.804][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.805][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.806][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.808][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.809][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.810][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.811][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.812][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.814][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.815][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.816][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.817][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.818][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.819][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.821][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.822][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.823][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.824][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.825][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.826][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.828][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.829][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.830][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.831][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:44.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.836][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.841][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:44.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:44.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.846][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.847][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.850][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.855][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:44.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:44.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.860][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.870][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:44.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.874][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.879][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.884][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:44.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:44.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.889][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.894][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.899][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:44.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:44.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.904][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.909][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.913][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:44.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:44.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.918][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.923][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:44.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.933][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.938][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:44.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.947][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.948][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.953][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.958][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:44.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:44.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.971][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:44.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:44.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.976][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.981][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.986][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:44.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:44.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:44.991][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:44.997][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...]. biodb.DEBUG[2025-08-09 16:04:44.998][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:44.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:45.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:45.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:45.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:45.009][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:45.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:45.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.016][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.020][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.022][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.025][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.026][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.030][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.035][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.039][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.044][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.049][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.054][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.059][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:45.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:45.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.066][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:45.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:45.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.081][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.082][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.086][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.087][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.091][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.096][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.100][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.105][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.110][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:45.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:45.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.115][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.116][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:45.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:45.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.119][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:45.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:45.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.124][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:45.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:45.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.129][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:45.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:45.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.134][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:45.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:45.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.138][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.139][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:45.141][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:45.142][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:45.143][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:45.144][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:45.145][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.147][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.148][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.150][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.151][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.152][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.153][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.154][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.155][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.157][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.158][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.159][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.160][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.161][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.162][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.164][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.165][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.166][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.167][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.168][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.169][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:45.171][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:45.172][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.173][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.174][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.175][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.176][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.177][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.179][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.180][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.181][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.182][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.183][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.184][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.186][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.187][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.188][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:45.189][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:45.190][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.191][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.193][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:45.194][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:45.195][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.196][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.197][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:45.198][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:45.200][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.201][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.202][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.203][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.204][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.205][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.207][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.208][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.209][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.210][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.211][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.213][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.214][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.215][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.216][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.217][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.218][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.220][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.221][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.222][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.223][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.224][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.225][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:45.227][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:45.228][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.229][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.230][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.231][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.233][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.234][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.235][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.236][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.237][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.238][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.240][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.241][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.242][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.243][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.244][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:45.246][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:45.247][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.248][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.249][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:45.250][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:45.251][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.253][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.254][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:45.255][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:45.256][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.257][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.258][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:45.260][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:45.261][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.262][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.263][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.264][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.266][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.267][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.268][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.269][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.270][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.271][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.273][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.274][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.275][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.276][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.277][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.278][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.280][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.281][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.282][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.283][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.284][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:45.286][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:45.287][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.288][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.289][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.290][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.291][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.292][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.294][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.295][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.296][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.297][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.298][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:45.300][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:45.301][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.302][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.303][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:45.304][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:45.305][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.307][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.308][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:45.309][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:45.310][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.311][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.312][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:45.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.317][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.322][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.327][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.328][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.332][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.337][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.338][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.341][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.346][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.351][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.356][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.361][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.366][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.370][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.375][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.380][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.385][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:45.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:45.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.390][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:45.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:45.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.395][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:45.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:45.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.399][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.411][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.416][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.421][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.426][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.431][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.435][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.437][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:45.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:45.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.440][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:45.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:45.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.445][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.446][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:45.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:45.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.450][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:45.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:45.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.455][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:45.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.459][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:45.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:45.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.464][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:45.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:45.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.469][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:45.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:45.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.474][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:45.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:45.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.478][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.485][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...]. biodb.DEBUG[2025-08-09 16:04:45.486][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:45.487][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:45.490][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:45.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:45.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:45.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:45.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:45.501][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:45.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:45.505][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:45.508][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:45.511][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content. sched.DEBUG[2025-08-09 16:04:45.512][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:45.515][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:45.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:45.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:45.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:45.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:45.526][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:45.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:45.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.532][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.537][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.542][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:45.543][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:45.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:45.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:45.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:45.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:45.554][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:45.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:45.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.560][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.565][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.570][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:45.571][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:45.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:45.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:45.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:45.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:45.582][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:45.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:45.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.588][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.593][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.598][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:45.599][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:45.601][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:45.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:45.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:45.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:45.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:45.612][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:45.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:45.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.618][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.623][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.624][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.628][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.629][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.632][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.637][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.642][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.647][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.652][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.657][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.661][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:45.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:45.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.666][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:45.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:45.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.671][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.672][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.676][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.677][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.680][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.685][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.690][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.695][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.699][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.701][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:45.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:45.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.704][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.705][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:45.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.709][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:45.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:45.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.714][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:45.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:45.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.719][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:45.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:45.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.723][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:45.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:45.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.728][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.729][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:45.731][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:45.732][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:45.734][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:45.735][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:45.736][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.737][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.739][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.740][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.741][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.742][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.750][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.751][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.753][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.754][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.755][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.757][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.758][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.759][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.760][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.761][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.763][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.764][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.765][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.766][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.768][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:45.769][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:45.770][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.771][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.772][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.774][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.775][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.776][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.777][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.779][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.780][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.781][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.782][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.783][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.785][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.786][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.787][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:45.788][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:45.789][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.791][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.792][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:45.793][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:45.794][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.795][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.797][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:45.798][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:45.799][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.800][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.801][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.803][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.804][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.805][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.806][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.808][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.809][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.810][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.811][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.812][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.814][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.815][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.816][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.817][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.818][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.820][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.821][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.822][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.823][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.824][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.826][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:45.827][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:45.828][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.829][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.831][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.832][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.833][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.834][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.835][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.837][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.838][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.839][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.840][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.842][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.843][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.844][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.845][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:45.846][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:45.848][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.849][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.850][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:45.851][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:45.852][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.853][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.855][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:45.856][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:45.857][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.858][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.860][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:45.861][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:45.862][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.863][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.864][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.866][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.867][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.868][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.869][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.870][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.872][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.873][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.874][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.875][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.877][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.878][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.879][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.880][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.881][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.883][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.884][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.885][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.886][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:45.887][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:45.889][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.890][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.891][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.892][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:45.894][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.895][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.896][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.897][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:45.898][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.900][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.901][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.902][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:45.903][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.904][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.906][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:45.907][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:45.908][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.909][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.910][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:45.912][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:45.913][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.914][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.915][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:45.916][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:45.917][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.919][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.920][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:45.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.925][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:45.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:45.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.934][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.936][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.939][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.941][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.944][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.945][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:45.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:45.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.949][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.954][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.959][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.963][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.968][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.973][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:45.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:45.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.978][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.983][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.988][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:45.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:45.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.993][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:45.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:45.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.003][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.007][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.009][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.012][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.014][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.017][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.018][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.022][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.027][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.032][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.036][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.041][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.046][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.051][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.052][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.057][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.061][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.066][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.070][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.075][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.092][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.097][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.102][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.108][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...]. biodb.DEBUG[2025-08-09 16:04:46.110][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:46.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:46.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:46.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:46.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:46.121][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:46.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:46.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.127][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.132][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.133][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.136][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.138][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.141][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.146][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.151][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.155][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.165][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.170][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.174][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.179][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.180][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.184][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.193][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.198][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.203][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.208][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.209][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.213][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.217][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.222][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.227][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.228][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.232][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.237][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.238][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:46.239][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:46.240][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:46.241][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:46.242][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:46.244][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.245][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.246][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.247][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.248][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.250][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.251][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.252][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.253][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.254][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.255][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.256][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.258][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.259][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.260][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.261][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.262][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.264][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.265][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.266][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.267][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.268][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.269][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.271][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.272][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.273][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.274][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.275][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.276][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.278][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.279][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.280][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.281][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.282][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.284][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.285][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.286][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.287][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.288][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.289][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.290][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.292][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.293][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.294][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.295][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.297][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.298][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.299][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.300][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.301][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.302][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.303][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.305][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.306][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.307][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.308][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.309][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.311][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.312][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.313][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.314][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.315][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.316][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.317][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.319][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.320][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.321][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.322][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.323][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.325][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.326][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.327][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.328][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.329][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.330][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.332][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.333][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.334][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.335][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.336][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.337][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.339][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.340][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.341][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.342][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.343][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.345][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.346][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.347][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.348][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.349][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.350][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.352][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.353][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.354][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.355][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.356][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:46.358][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:46.359][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.360][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.361][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.362][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.363][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.365][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.366][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.367][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.368][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.369][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.371][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.372][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.373][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.374][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.375][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.376][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.378][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.379][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.380][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.381][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.382][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.384][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.385][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.386][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.387][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.388][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.389][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.391][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.392][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.393][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.394][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.395][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.396][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.398][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.399][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.400][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.401][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.402][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.404][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.405][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.406][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.407][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.408][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.416][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.418][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:46.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.423][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.428][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.432][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.434][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.437][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.439][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.442][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.443][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.447][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.452][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.457][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.462][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.466][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.471][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.476][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.481][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.486][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.490][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.495][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.500][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.505][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.510][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.514][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.519][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.524][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.529][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.534][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.535][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.539][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.540][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.543][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.544][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.548][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.553][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.558][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.568][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.572][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.577][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.584][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...]. biodb.DEBUG[2025-08-09 16:04:46.585][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:46.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:46.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:46.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:46.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:46.596][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:46.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:46.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.602][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.607][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.608][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.612][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.613][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.616][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.626][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.631][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.636][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.640][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.645][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.650][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.655][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.656][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.660][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.661][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.664][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.669][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.674][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.679][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.684][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.685][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.688][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.690][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.693][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.698][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.703][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.708][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.712][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.714][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:46.715][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:46.716][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:46.717][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:46.718][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:46.719][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.721][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.722][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.723][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.724][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.725][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.727][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.728][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.729][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.730][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.731][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.732][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.734][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.735][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.736][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.738][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.740][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.742][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.754][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.756][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.757][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.758][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.760][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.761][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.762][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.764][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.765][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.766][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.767][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.768][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.769][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.771][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.772][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.773][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.774][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.775][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.776][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.778][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.779][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.780][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.781][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.782][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.783][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.785][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.786][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.787][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.788][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.789][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.790][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.792][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.793][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.794][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.795][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.796][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.797][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.799][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.800][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.801][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.802][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.803][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.804][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.806][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.807][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.808][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.809][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.810][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.811][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.813][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.814][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.815][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.816][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.817][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.818][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.820][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:46.821][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.822][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.823][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.824][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.826][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.827][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.828][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.829][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.830][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.831][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.832][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.834][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.835][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.836][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.837][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.838][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.840][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.841][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.842][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.843][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.844][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.845][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.847][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:46.848][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:46.849][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.850][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.851][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.852][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.853][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.855][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.856][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.857][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.858][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.859][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.861][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.862][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.863][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.864][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.865][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.866][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.868][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.869][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.870][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.871][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.872][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.873][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.875][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.876][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.877][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.878][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.879][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.880][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.882][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.883][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:46.884][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.885][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.886][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:46.888][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:46.889][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.890][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.891][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:46.892][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:46.894][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.895][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.896][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:46.897][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:46.898][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.899][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.901][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:46.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.906][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.910][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:46.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:46.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.915][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.917][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.920][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.921][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.926][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:46.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:46.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.930][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.935][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.940][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:46.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.945][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.950][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.954][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:46.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.959][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.964][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.969][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:46.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:46.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.974][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.983][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:46.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:46.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.988][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.993][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:46.998][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:46.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.008][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.013][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.017][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.022][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.023][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.027][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.028][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.032][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.037][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.042][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.046][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.051][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.056][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.061][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.067][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...]. biodb.DEBUG[2025-08-09 16:04:47.068][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:47.070][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:47.085][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:47.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:47.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:47.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:47.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:47.096][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:47.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:47.100][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:47.103][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:47.105][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/2e865a03592d6effdf242ff63104f35a.content. sched.DEBUG[2025-08-09 16:04:47.106][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. sched.DEBUG[2025-08-09 16:04:47.109][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:47.112][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:47.115][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/f0c73645ca32490f91d503a462d812b2.content. sched.DEBUG[2025-08-09 16:04:47.116][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:47.119][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:47.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:47.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:47.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:47.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:47.130][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:47.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:47.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.136][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.141][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.146][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:47.147][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:47.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:47.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:47.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:47.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:47.158][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:47.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:47.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.164][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.169][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.174][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:47.175][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:47.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:47.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:47.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:47.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:47.186][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:47.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:47.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.192][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.197][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.202][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:47.203][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:47.205][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:47.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:47.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:47.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:47.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:47.217][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:47.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:47.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:47.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:47.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.223][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:47.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:47.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.228][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.229][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:47.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:47.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.233][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.234][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:47.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:47.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.238][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.242][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.247][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:47.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:47.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.252][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:47.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:47.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.257][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:47.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:47.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.262][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:47.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:47.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.266][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:47.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:47.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.271][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:47.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:47.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.276][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.277][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.281][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.282][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.286][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.291][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.295][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.300][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.305][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.306][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.310][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.311][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.314][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.319][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.324][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.329][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.333][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.335][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.338][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.340][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.343][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.344][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:47.345][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:47.347][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:47.348][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:47.349][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:47.350][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:47.351][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:47.353][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.354][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.355][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:47.356][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:47.357][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.358][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.360][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.361][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.362][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.363][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.364][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:47.365][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:47.367][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.368][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.369][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:47.370][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:47.371][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.372][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.374][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:47.375][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:47.376][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.377][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.378][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.380][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.381][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.382][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.383][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.384][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.385][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.387][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.388][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.389][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.390][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.391][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.392][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.394][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.395][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.396][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.397][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.398][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.400][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.401][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.402][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.403][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.404][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.405][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.407][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.408][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.409][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.410][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.411][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:47.413][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:47.414][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.415][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.416][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:47.417][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:47.425][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.427][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.428][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.429][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.430][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.432][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.433][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:47.434][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:47.435][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.436][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.437][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:47.439][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:47.440][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.441][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.442][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:47.443][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:47.445][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.446][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.447][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.448][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.449][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.450][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.452][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.453][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.454][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.455][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.456][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.458][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.459][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.460][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.461][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.462][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.463][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.465][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.466][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.467][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.468][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.469][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.470][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.472][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.473][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.474][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.475][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.476][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.477][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.479][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.480][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:47.481][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:47.482][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:47.483][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:47.484][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.486][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.487][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:47.488][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:47.489][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.490][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.491][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.493][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.494][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.495][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.496][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:47.497][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:47.499][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.500][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.501][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:47.502][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:47.503][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.504][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.506][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:47.507][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:47.508][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.509][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.510][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.511][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.513][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.514][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.515][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.516][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.517][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.518][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.520][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.521][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.522][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.523][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.524][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.525][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.527][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.528][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.529][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.530][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.531][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.532][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.533][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.535][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.536][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.537][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.538][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:47.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:47.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:47.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:47.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:47.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.548][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:47.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:47.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.553][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:47.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:47.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.558][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.559][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:47.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:47.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.563][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.564][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:47.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:47.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.572][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.577][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.582][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:47.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:47.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.587][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.588][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:47.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:47.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.592][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:47.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:47.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.597][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:47.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:47.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.602][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:47.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:47.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.606][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:47.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:47.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.611][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:47.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:47.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.616][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:47.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:47.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.621][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:47.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.626][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.627][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.631][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.632][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.635][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.637][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.640][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.645][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.650][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.655][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.660][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.665][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.669][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.671][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.676][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.679][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.680][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.684][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.689][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.694][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.698][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.700][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.703][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.708][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.713][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.720][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...]. biodb.DEBUG[2025-08-09 16:04:47.721][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:47.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:47.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:47.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:47.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:47.732][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:47.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:47.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.739][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:47.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:47.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.746][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.748][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:47.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:47.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.758][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.760][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:47.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.764][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.769][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.774][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:47.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.779][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:47.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:47.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.785][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:47.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:47.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.789][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:47.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:47.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.794][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:47.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:47.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.799][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:47.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:47.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.810][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.813][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.818][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.823][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.828][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.832][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.834][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.837][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.838][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.842][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.847][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.852][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.856][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.861][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.862][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.866][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.867][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.871][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.872][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:47.873][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:47.874][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:47.875][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:47.876][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:47.878][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:47.879][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:47.880][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.881][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.882][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:47.884][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:47.885][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.886][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.887][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.888][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.889][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.891][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.892][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:47.893][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:47.894][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.895][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.896][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:47.898][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:47.899][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.900][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.901][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:47.903][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:47.904][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.905][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.906][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.907][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.908][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.910][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.911][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.912][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.913][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.914][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.915][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.917][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.918][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.919][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.920][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.921][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.923][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.924][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.925][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.926][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.927][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.928][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.930][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.931][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.932][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.933][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.934][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.935][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.937][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.938][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.939][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:47.940][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:47.941][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.942][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.944][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:47.945][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:47.946][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.947][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.948][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.950][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:47.951][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.952][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.953][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:47.954][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:47.955][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.956][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.958][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:47.960][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:47.961][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.962][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.963][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:47.964][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:47.965][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.967][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.968][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.969][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:47.970][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.971][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.972][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.974][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:47.975][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.976][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.977][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.978][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:47.980][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.981][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.982][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:47.983][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:47.984][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.985][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.987][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:47.988][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:47.989][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.990][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.991][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:47.993][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:47.994][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:47.995][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:47.996][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.997][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:47.998][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.000][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.001][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:48.002][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:48.003][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:48.004][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:48.006][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.007][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.008][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:48.009][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:48.010][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.011][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.013][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.014][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.015][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.016][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.017][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:48.018][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:48.020][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.021][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.022][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:48.023][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:48.024][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.025][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.027][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:48.028][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:48.029][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.030][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.031][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.033][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.034][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.035][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.036][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.037][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.039][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.040][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.041][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.042][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.043][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.044][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.046][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:48.047][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:48.048][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.049][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.050][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:48.052][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:48.053][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.054][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.055][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:48.056][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:48.057][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.058][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.060][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:48.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:48.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.065][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:48.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:48.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.069][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:48.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:48.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.075][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:48.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:48.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.079][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.080][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:48.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:48.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:48.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:48.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.095][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.101][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.105][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.110][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:48.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:48.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.115][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:48.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:48.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.120][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:48.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.125][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:48.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:48.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.130][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:48.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:48.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.134][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:48.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:48.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.139][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:48.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:48.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.144][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:48.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:48.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.149][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:48.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.153][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.155][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.158][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.163][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.164][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.168][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.173][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.177][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.182][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.187][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.192][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.196][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:48.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:48.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.206][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.207][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:48.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.211][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:48.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:48.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.216][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:48.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:48.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.220][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:48.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:48.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.225][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:48.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:48.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.230][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:48.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:48.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.235][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.236][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:48.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:48.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.240][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.246][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...]. biodb.DEBUG[2025-08-09 16:04:48.248][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:48.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:48.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:48.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:48.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:48.259][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:48.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:48.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:48.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:48.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.265][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:48.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:48.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.270][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.271][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:48.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:48.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.274][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.276][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:48.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:48.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.279][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.289][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:48.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:48.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.294][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:48.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:48.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.298][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:48.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:48.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.303][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:48.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:48.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.308][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:48.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:48.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.313][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:48.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:48.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.317][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.319][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.322][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.323][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.327][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.332][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.336][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.341][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.346][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.347][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:48.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:48.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.352][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:48.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:48.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.355][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:48.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:48.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.360][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:48.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:48.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.365][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:48.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:48.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.370][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:48.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:48.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.375][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.376][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:48.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:48.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.379][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.381][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:48.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:48.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.384][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.385][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:48.386][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:48.388][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:48.389][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:48.390][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:48.391][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:48.392][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:48.393][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.395][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.396][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:48.397][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:48.398][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.399][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.400][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.402][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.403][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.404][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.405][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:48.406][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:48.408][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.409][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.410][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:48.411][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:48.419][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.420][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.422][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:48.423][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:48.424][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.425][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.427][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.428][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.429][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.430][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.431][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.433][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.434][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.435][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.436][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.437][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.438][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.440][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.441][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:48.442][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:48.443][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.444][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.445][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:48.447][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:48.448][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.449][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.450][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:48.451][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:48.452][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.454][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.455][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:48.456][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:48.457][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.458][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.459][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:48.461][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:48.462][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.463][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.464][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:48.465][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:48.466][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.467][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.469][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.470][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.471][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.472][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.473][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:48.475][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:48.476][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.477][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.478][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:48.479][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:48.480][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.481][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.483][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:48.484][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:48.485][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.486][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.487][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.489][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.490][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.491][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.492][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.493][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.494][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.495][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.497][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.498][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.499][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.500][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.501][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:48.503][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:48.504][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.505][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.506][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:48.507][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:48.508][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.510][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.511][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:48.512][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:48.513][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.514][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.515][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:48.517][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:48.518][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.519][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.520][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:48.521][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:48.522][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:48.524][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:48.525][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.526][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.527][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:48.528][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:48.530][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.531][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.532][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.533][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.534][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.535][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.536][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:48.538][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:48.539][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.540][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.541][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:48.542][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:48.544][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.545][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.546][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:48.547][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:48.548][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.549][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.551][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.552][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.553][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.554][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.555][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.557][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.558][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.559][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.560][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:48.561][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:48.562][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.563][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.565][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:48.566][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:48.567][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.568][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.569][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:48.571][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:48.572][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.573][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.574][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:48.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:48.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:48.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.579][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:48.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:48.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.584][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:48.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:48.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.589][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:48.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.594][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.595][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:48.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:48.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.598][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:48.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:48.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.603][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.608][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.618][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:48.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:48.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.623][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:48.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:48.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.627][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:48.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:48.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.632][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:48.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:48.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.637][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:48.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.642][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:48.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:48.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.647][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:48.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.652][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:48.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:48.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.656][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:48.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:48.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.661][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.666][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.671][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.676][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.681][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.686][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.690][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.692][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:48.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:48.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.695][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.697][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:48.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:48.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.700][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.701][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:48.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:48.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.705][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:48.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:48.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.710][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:48.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:48.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.715][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:48.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:48.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.720][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:48.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:48.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.725][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:48.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:48.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.729][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:48.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:48.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.734][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.749][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...]. biodb.DEBUG[2025-08-09 16:04:48.750][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:48.752][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:48.755][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:48.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:48.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:48.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:48.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:48.766][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:48.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:48.770][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:48.773][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:48.776][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content. sched.DEBUG[2025-08-09 16:04:48.777][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:48.780][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:48.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:48.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:48.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:48.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:48.791][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:48.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.797][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.802][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.807][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:48.808][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:48.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:48.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:48.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:48.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:48.819][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:48.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:48.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.825][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.830][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.835][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:48.836][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:48.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:48.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:48.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:48.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:48.847][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:48.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:48.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.853][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.858][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.863][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:48.864][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:48.866][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:48.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:48.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:48.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:48.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:48.877][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:48.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:48.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:48.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:48.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.883][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:48.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:48.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.888][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.889][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:48.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:48.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.893][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.894][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:48.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:48.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.898][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.903][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:48.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:48.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:48.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.912][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:48.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:48.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.917][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:48.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:48.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.922][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:48.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:48.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.927][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:48.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:48.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.932][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:48.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.937][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.938][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.941][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.943][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:48.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.946][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.951][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:48.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.956][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.961][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.966][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.967][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:48.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:48.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.970][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.972][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:48.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:48.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.975][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:48.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:48.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.980][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:48.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:48.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.985][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:48.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:48.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.990][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:48.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:48.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.995][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:48.996][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:48.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:48.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:48.999][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.001][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:49.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:49.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.005][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:49.007][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:49.008][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:49.009][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:49.010][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:49.011][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.013][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.014][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.015][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.017][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.018][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.020][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.021][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.022][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.023][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.024][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.025][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.027][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.028][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.029][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.030][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.031][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.032][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.034][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.035][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.036][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.037][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.038][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.039][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.041][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.042][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.043][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.044][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.045][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.047][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.048][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.049][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.050][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.051][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.053][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.054][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.055][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.056][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.057][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.058][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.060][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:49.061][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:49.062][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.063][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.064][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:49.066][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:49.067][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.068][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.069][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:49.070][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:49.072][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.073][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.074][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.075][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.076][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.078][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.079][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.080][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.081][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.089][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.090][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.092][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.093][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.094][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.096][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.097][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.098][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.099][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.101][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.102][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.103][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.104][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.105][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.106][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.108][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.109][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.110][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.111][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.112][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.114][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.115][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.116][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.117][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.118][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.120][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.121][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.122][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.123][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.124][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.125][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.127][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.128][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.129][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:49.130][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:49.131][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.132][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.134][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:49.135][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:49.136][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.137][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.138][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:49.140][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:49.141][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.142][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.143][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:49.144][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:49.145][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.147][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.148][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.149][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.150][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.151][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.153][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.154][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.155][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.156][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.157][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.158][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.159][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.161][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.162][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.163][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.164][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.165][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.167][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.168][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.169][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.170][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.171][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.172][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.174][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.175][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.176][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.177][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.178][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.179][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.181][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.182][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.183][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.184][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.185][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.186][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.188][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.189][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.190][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.191][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.192][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:49.193][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:49.195][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.196][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.197][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:49.198][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:49.199][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.200][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.202][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:49.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.207][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.211][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.216][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.218][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.221][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.223][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.226][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.227][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.231][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.236][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.241][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.246][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.251][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.255][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.260][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.265][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.270][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.275][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.280][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.285][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.290][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.291][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.295][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.296][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.299][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.301][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.304][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.309][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.314][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.319][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.329][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.333][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.335][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.338][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.343][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.345][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.348][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:49.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:49.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.353][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:49.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:49.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.358][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:49.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.363][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:49.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:49.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.368][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:49.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:49.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.373][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:49.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:49.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.377][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...]. biodb.DEBUG[2025-08-09 16:04:49.386][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:49.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:49.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:49.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:49.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:49.397][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:49.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:49.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.403][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.408][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.409][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.413][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.421][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.425][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.430][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.434][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.439][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.444][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.449][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.454][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.458][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.463][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.464][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.468][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.469][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.472][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.477][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.482][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.487][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.492][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.493][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.497][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.498][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.501][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:49.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:49.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.506][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:49.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:49.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:49.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:49.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.516][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:49.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:49.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.523][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.524][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:49.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:49.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.527][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.529][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:49.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:49.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.532][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.534][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:49.535][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:49.536][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:49.537][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:49.538][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:49.539][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.541][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.542][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.543][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.544][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.545][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.546][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.548][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.549][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.550][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.551][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.552][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.553][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.555][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.556][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.557][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.558][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.559][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.561][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.562][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.563][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.564][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.565][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.566][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.568][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.569][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.570][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.571][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.572][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.574][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.575][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.576][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.577][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.578][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.579][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.581][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.582][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.583][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.584][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.585][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.587][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:49.588][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:49.589][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.590][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.591][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:49.593][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:49.594][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.595][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.596][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:49.597][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:49.598][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.600][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.601][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.602][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.603][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.604][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.605][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.607][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.608][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.609][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.610][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.611][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.613][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.614][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.615][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.616][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.617][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.618][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.620][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.621][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.622][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.623][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.624][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.625][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.627][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.628][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.629][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.630][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.631][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.633][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.634][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.635][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.636][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.637][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.638][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.640][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.641][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.642][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.643][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.644][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.646][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.647][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.648][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:49.649][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:49.650][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.651][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.653][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:49.654][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:49.655][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.656][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.657][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:49.659][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:49.660][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.661][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.662][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:49.663][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:49.664][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.666][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.667][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.668][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.669][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.670][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.672][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.673][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.674][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.675][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.676][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.677][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.679][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.680][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.681][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.682][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.683][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.685][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.686][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.687][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.688][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.689][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.690][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.692][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.693][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.694][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.695][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.696][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.698][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.699][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.700][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.701][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.702][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.704][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.705][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.706][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.707][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:49.708][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:49.709][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.711][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.712][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:49.713][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:49.714][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.715][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.717][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:49.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.721][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.727][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.733][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.734][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.738][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.739][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.743][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.744][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.754][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.760][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.765][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.770][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.775][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.780][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.784][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.789][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.794][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.799][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.804][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.809][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.813][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.818][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.823][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.828][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.833][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.838][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.843][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.844][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.848][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.849][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.852][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.854][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.857][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:49.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:49.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:49.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:49.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.867][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:49.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:49.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.872][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:49.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:49.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.877][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:49.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:49.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.881][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:49.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:49.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.893][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...]. biodb.DEBUG[2025-08-09 16:04:49.894][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:49.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:49.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:49.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:49.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:49.905][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:49.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:49.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.911][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:49.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:49.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.916][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.917][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.921][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.922][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:49.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.926][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.931][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:49.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.935][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.940][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.941][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:49.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:49.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.945][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.950][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:49.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:49.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.954][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.959][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:49.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:49.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.964][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.965][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.969][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.970][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:49.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.974][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.978][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:49.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.983][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.988][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:49.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.993][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.994][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:49.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:49.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:49.998][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:49.999][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:50.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:50.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.002][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:50.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:50.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.007][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:50.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:50.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.012][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:50.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:50.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.017][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:50.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:50.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.022][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.026][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.028][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.031][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.032][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:50.034][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:50.035][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:50.036][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:50.037][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:50.038][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:50.040][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:50.041][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.042][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.043][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:50.044][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:50.045][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.047][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.048][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.049][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.050][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.051][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.052][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:50.054][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:50.055][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.056][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.057][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:50.058][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:50.060][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.061][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.062][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:50.063][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:50.064][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.065][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.067][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.068][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.069][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.070][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.071][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.073][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.074][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.075][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.076][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.077][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.085][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.087][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.088][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:50.089][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:50.091][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.092][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.093][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:50.094][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:50.095][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.097][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.098][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:50.099][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:50.100][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.101][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.102][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.104][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.105][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.106][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.107][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:50.108][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:50.110][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.111][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.112][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:50.113][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:50.114][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.115][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.117][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.118][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.119][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.120][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.121][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:50.122][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:50.124][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.125][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.126][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:50.127][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:50.128][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.129][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.131][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:50.132][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:50.133][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.134][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.135][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.137][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.138][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.139][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.140][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.141][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.142][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.144][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.145][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.146][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.147][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.148][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.149][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:50.151][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:50.152][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.153][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.154][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:50.155][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:50.157][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.158][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.159][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:50.160][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:50.161][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.162][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.164][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.165][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.166][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.167][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.168][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:50.170][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:50.171][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:50.172][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:50.173][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.174][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.175][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:50.177][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:50.178][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.179][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.180][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.181][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.183][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.184][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.185][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:50.186][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:50.187][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.188][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.190][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:50.191][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:50.192][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.193][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.194][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:50.196][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:50.197][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.198][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.199][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.200][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.201][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.203][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.204][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.205][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.206][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.207][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.208][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:50.210][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:50.211][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.212][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.213][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:50.214][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:50.216][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.217][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.218][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:50.219][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:50.220][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.221][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.223][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:50.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:50.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:50.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.228][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:50.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:50.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.232][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:50.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:50.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.237][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.239][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:50.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:50.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.242][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.244][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:50.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:50.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.247][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.248][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:50.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:50.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.252][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.257][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.262][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.266][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:50.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.271][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:50.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:50.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.276][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:50.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:50.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.281][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:50.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.286][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:50.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:50.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.291][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:50.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:50.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.296][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:50.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:50.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.301][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:50.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:50.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.305][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:50.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:50.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.310][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.315][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.320][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.325][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.330][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.334][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.339][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.341][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:50.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:50.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.344][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:50.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.349][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.350][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:50.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:50.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.354][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:50.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:50.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.359][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:50.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:50.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.364][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:50.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:50.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.368][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:50.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.373][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:50.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:50.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.378][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:50.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:50.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.383][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.389][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...]. biodb.DEBUG[2025-08-09 16:04:50.391][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:50.392][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.DEBUG[2025-08-09 16:04:50.395][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:50.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:50.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:50.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:50.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:50.414][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:50.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". sched.DEBUG[2025-08-09 16:04:50.419][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL". fscache.INFO [2025-08-09 16:04:50.422][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched. fscache.DEBUG[2025-08-09 16:04:50.425][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content. sched.DEBUG[2025-08-09 16:04:50.427][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache. biodb.DEBUG[2025-08-09 16:04:50.430][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:50.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:50.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:50.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:50.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:50.441][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:50.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:50.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.448][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.452][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.457][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:50.458][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:50.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:50.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:50.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:50.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:50.470][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:50.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:50.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.476][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.481][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.485][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:50.487][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:50.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:50.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:50.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:50.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:50.498][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:50.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:50.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.504][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.509][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.514][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.DEBUG[2025-08-09 16:04:50.515][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame. biodb.DEBUG[2025-08-09 16:04:50.517][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:50.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:50.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:50.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:50.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:50.528][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:50.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:50.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:50.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:50.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.535][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:50.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:50.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.539][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.541][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:50.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:50.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.544][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.546][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:50.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:50.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.549][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.554][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.559][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:50.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:50.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.564][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:50.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:50.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.569][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:50.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:50.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.573][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:50.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:50.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.578][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:50.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:50.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.583][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:50.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:50.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.588][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.589][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.593][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.594][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.598][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.602][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.607][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.612][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.617][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.618][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:50.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:50.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.622][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.623][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:50.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:50.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.626][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:50.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:50.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.631][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:50.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:50.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.636][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:50.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:50.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.641][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:50.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:50.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.645][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.647][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.650][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.652][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.655][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.656][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:50.658][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:50.659][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:50.660][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:50.661][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:50.662][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:50.663][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:50.665][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.666][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.667][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:50.668][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:50.669][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.670][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.672][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.673][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.674][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.675][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.676][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:50.678][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:50.679][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.680][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.681][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:50.682][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:50.683][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.685][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.686][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:50.687][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:50.688][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.689][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.690][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.692][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.693][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.694][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.695][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.696][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.698][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.699][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.700][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.701][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.702][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.703][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.704][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:50.706][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:50.707][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.708][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.709][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:50.710][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:50.712][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.713][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.714][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:50.715][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:50.716][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.717][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.719][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.720][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.721][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.722][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.723][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:50.725][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:50.726][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.727][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.728][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:50.730][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:50.732][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.733][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.735][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.737][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.738][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.740][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.742][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:50.744][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:50.745][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.747][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.749][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:50.750][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:50.752][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.754][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.755][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:50.774][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:50.776][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.778][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.780][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.782][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.784][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.786][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.787][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.789][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.791][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.793][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.795][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.796][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.798][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.799][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.801][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:50.802][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:50.803][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.804][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.805][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:50.807][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:50.808][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.809][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.810][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:50.811][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:50.813][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.814][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.815][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.816][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:50.817][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.818][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.820][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:50.821][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:50.822][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:50.823][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:50.824][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.826][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.827][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:50.828][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:50.829][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.830][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.831][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.833][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.834][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.835][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.836][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:50.837][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:50.838][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.840][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.841][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:50.842][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:50.843][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.844][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.845][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:50.847][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:50.848][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.849][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.850][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.851][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.853][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.854][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.855][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.856][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.857][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.858][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.860][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.861][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.862][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.863][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.864][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:50.866][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:50.867][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.868][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.869][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:50.871][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:50.872][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.873][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.874][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:50.875][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:50.877][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.878][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.879][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:50.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:50.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:50.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.884][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:50.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.889][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:50.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:50.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.893][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.895][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:50.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:50.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.898][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:50.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.903][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.905][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:50.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:50.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.908][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.913][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.918][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:50.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.923][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:50.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:50.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.928][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:50.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:50.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.933][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:50.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:50.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.937][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:50.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.942][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:50.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:50.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.947][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:50.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:50.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.952][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:50.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:50.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.957][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:50.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:50.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.962][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:50.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:50.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.967][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.968][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.971][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.976][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.977][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.981][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.986][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.991][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:50.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:50.996][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:50.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:50.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.005][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.010][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.015][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.016][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.020][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.021][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.025][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.030][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.034][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.039][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.044][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.049][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.054][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.061][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...]. biodb.DEBUG[2025-08-09 16:04:51.062][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:51.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:51.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:51.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:51.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:51.073][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:51.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:51.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.079][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.084][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.085][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.090][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.094][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.098][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.103][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.115][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.120][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.125][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.130][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:51.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:51.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.135][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:51.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:51.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.140][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.141][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.144][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.146][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.154][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.159][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.163][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.168][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.169][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.173][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.174][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.178][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.182][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.187][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.192][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.198][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.203][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.206][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.207][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:51.209][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:51.210][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:51.211][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:51.212][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:51.213][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.215][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.216][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.217][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.218][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.219][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.220][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.221][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.223][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.224][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.225][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.226][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.227][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.229][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.230][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.231][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.232][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.233][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.234][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.235][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.237][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:51.238][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:51.239][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.240][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.241][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.243][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.244][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.245][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.246][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.247][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.248][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.250][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.251][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.252][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.253][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.254][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.256][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.257][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.258][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.259][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.260][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.262][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.263][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.264][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.265][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.266][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.267][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.269][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.270][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.271][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.272][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.273][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.274][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.276][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.277][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.278][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.279][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.280][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.282][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.283][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.284][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.285][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.286][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.287][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.289][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.290][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.291][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.292][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.293][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.295][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.296][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.297][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.298][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:51.299][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:51.300][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.302][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.303][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.304][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.305][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.306][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.307][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.309][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.310][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.311][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.312][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.313][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.315][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.316][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.317][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.318][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.319][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.320][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.321][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.323][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.324][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.325][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.326][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.327][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.329][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.330][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.331][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.332][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.333][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.334][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.336][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:51.337][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:51.338][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.339][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.340][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.342][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.343][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.344][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.345][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.346][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.347][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.349][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.350][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.351][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.352][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.353][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.355][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.356][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.357][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.358][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.359][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.360][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.362][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:51.363][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:51.364][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.365][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.366][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.368][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.369][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.370][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.371][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.372][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.373][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.375][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.376][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.377][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.378][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.379][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.380][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.382][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.383][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.384][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.385][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.386][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.388][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.389][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.390][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:51.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.395][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.400][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.404][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.406][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.409][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.411][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.414][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.415][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.424][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.429][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.434][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.445][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.451][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.456][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.466][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.471][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:51.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:51.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.476][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:51.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:51.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.481][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.486][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.491][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.500][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.505][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.510][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.515][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.516][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.520][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.521][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.524][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.526][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.529][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.534][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.539][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.544][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.549][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.553][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.558][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.564][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...]. biodb.DEBUG[2025-08-09 16:04:51.566][notifyObservers] Notify observers for notifyProgress. biodb.DEBUG[2025-08-09 16:04:51.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:51.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:51.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:51.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:51.577][FUN] Trying to call function notifyProgress on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:51.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". biodb.TRACE[2025-08-09 16:04:51.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.583][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.587][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.592][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.593][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.597][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.602][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.607][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.611][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.616][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.621][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.626][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:51.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:51.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.631][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:51.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:51.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.635][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.637][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.640][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.641][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.645][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.650][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.654][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.659][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.664][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.665][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.669][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.670][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.674][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.678][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.683][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.688][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.689][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.693][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.694][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.697][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.702][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.703][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:51.704][private$selectFields] Fields type: <NULL> biodb.TRACE[2025-08-09 16:04:51.706][private$selectFields] Fields is null: FALSE biodb.TRACE[2025-08-09 16:04:51.707][private$selectFields] Fields.type is null: TRUE biodb.TRACE[2025-08-09 16:04:51.708][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..." biodb.TRACE[2025-08-09 16:04:51.709][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.710][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.712][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.713][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.714][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.715][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.716][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.717][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.719][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.720][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.721][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.722][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.723][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.725][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.726][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.727][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.728][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.729][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.730][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.732][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.734][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:51.736][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:51.737][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.739][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.741][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.743][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.744][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.746][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.747][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.749][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.751][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.753][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.754][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.756][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.758][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.759][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.761][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.763][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.765][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.766][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.768][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.770][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.771][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.773][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.775][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.777][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.778][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.780][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.782][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.784][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.796][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.798][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.800][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.803][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.804][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.806][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.808][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.810][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.811][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.813][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.815][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.817][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.818][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.819][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.820][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.821][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.823][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.824][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.825][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.826][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.827][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.828][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.830][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:51.831][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:51.832][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.833][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.834][ef$get] Asked field names are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.836][ef$get] Realnames of fields are: kegg.compound.id. biodb.TRACE[2025-08-09 16:04:51.837][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.838][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.839][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.840][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.841][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.843][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.844][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.845][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.846][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.847][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.848][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.850][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.851][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.852][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.853][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.854][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.855][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.857][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.858][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.859][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.860][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.861][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.862][ef$get] Asked field names are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.864][ef$get] Realnames of fields are: peak.attr. biodb.TRACE[2025-08-09 16:04:51.865][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.866][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.867][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:51.868][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..." biodb.TRACE[2025-08-09 16:04:51.869][ef$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.871][ef$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.872][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.873][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.874][ef$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.875][ef$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.877][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.878][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.879][ef$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.880][ef$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.881][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.882][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.884][ef$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.885][ef$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.886][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.887][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.888][ef$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.889][ef$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.891][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.892][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.893][ef$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:51.894][ef$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:51.895][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.896][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.898][ef$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.899][ef$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:51.900][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.901][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.902][ef$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.904][ef$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:51.905][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.906][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.907][ef$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:51.908][ef$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:51.909][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.910][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.912][ef$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:51.913][ef$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:51.914][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.915][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.916][ef$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:51.918][ef$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:51.919][ef$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.920][ef$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.921][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()" biodb.TRACE[2025-08-09 16:04:51.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.931][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession. biodb.TRACE[2025-08-09 16:04:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession. biodb.TRACE[2025-08-09 16:04:51.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.935][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.937][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.940][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.942][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.945][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.947][self$getBiodb()$getEntryFields()$get] Asked field names are: charge. biodb.TRACE[2025-08-09 16:04:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge. biodb.TRACE[2025-08-09 16:04:51.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.950][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.955][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.960][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id. biodb.TRACE[2025-08-09 16:04:51.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.965][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.974][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula. biodb.TRACE[2025-08-09 16:04:51.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula. biodb.TRACE[2025-08-09 16:04:51.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.979][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.984][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.989][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi. biodb.TRACE[2025-08-09 16:04:51.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi. biodb.TRACE[2025-08-09 16:04:51.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.994][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:51.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:51.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:51.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:51.999][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:52.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:52.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.004][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey. biodb.TRACE[2025-08-09 16:04:52.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey. biodb.TRACE[2025-08-09 16:04:52.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.008][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:52.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:52.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:52.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:52.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.018][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass. biodb.TRACE[2025-08-09 16:04:52.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass. biodb.TRACE[2025-08-09 16:04:52.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.023][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:52.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:52.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.028][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:52.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:52.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.033][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:52.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass. biodb.TRACE[2025-08-09 16:04:52.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.037][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.039][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:52.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:52.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.042][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.044][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:52.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:52.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.047][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.048][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars. biodb.TRACE[2025-08-09 16:04:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars. biodb.TRACE[2025-08-09 16:04:52.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.052][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:52.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:52.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.057][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:52.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:52.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.062][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name. biodb.TRACE[2025-08-09 16:04:52.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name. biodb.TRACE[2025-08-09 16:04:52.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.067][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:52.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:52.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.072][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:52.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:52.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.076][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles. biodb.TRACE[2025-08-09 16:04:52.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles. biodb.TRACE[2025-08-09 16:04:52.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.081][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.087][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...]. biodb.DEBUG[2025-08-09 16:04:52.089][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s). biodb.DEBUG[2025-08-09 16:04:52.090][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries. biodb.TRACE[2025-08-09 16:04:52.096][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:04:52.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:04:52.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.100][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.101][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:04:52.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:04:52.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.105][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.TRACE[2025-08-09 16:04:52.106][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass. biodb.TRACE[2025-08-09 16:04:52.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass. biodb.TRACE[2025-08-09 16:04:52.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned. biodb.TRACE[2025-08-09 16:04:52.109][self$getBiodb()$getEntryFields()$get] fields variable is a list. biodb.INFO [2025-08-09 16:04:52.115][biodb$terminate] Closing BiodbMain instance... biodb.INFO [2025-08-09 16:04:52.117][self$deleteConn] Connector "chebi" deleted. biodb.DEBUG[2025-08-09 16:04:52.118][notifyObservers] Notify observers for terminate. biodb.DEBUG[2025-08-09 16:04:52.119][FUN] Trying to call function terminate on observer BiodbTestMsgAck. biodb.DEBUG[2025-08-09 16:04:52.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize". biodb.DEBUG[2025-08-09 16:04:52.121][FUN] Trying to call function terminate on observer BiodbEntryFields. biodb.DEBUG[2025-08-09 16:04:52.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize". biodb.DEBUG[2025-08-09 16:04:52.123][FUN] Trying to call function terminate on observer BiodbConfig. biodb.DEBUG[2025-08-09 16:04:52.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize". [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1264 ] > > proc.time() user system elapsed 76.65 2.90 83.39
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck' * using R version 4.5.1 (2025-06-13 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error' * checking for file 'biodbChebi/DESCRIPTION' ... OK * this is package 'biodbChebi' version '1.15.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'biodbChebi' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... SKIPPED * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... SKIPPED * checking examples ... SKIPPED * checking for unstated dependencies in 'longtests' ... OK * checking tests in 'longtests' ... Running 'testthat.R' OK * DONE Status: OK
biodbChebi.Rcheck/00install.out
* installing *source* package 'biodbChebi' ... ** this is package 'biodbChebi' version '1.15.1' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)