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This page was generated on 2025-12-04 12:02 -0500 (Thu, 04 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4878
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4624
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4669
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1268/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methylclock 1.16.0  (landing page)
Dolors Pelegri-Siso
Snapshot Date: 2025-12-01 13:45 -0500 (Mon, 01 Dec 2025)
git_url: https://git.bioconductor.org/packages/methylclock
git_branch: RELEASE_3_22
git_last_commit: 79b4e8b
git_last_commit_date: 2025-10-29 11:10:33 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
merida1macOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for methylclock on taishan

To the developers/maintainers of the methylclock package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/methylclock.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: methylclock
Version: 1.16.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylclock
StartedAt: 2025-12-02 02:56:30 -0000 (Tue, 02 Dec 2025)
EndedAt: 2025-12-02 03:13:46 -0000 (Tue, 02 Dec 2025)
EllapsedTime: 1035.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylclock
###
##############################################################################
##############################################################################


* checking for file ‘methylclock/DESCRIPTION’ ... OK
* preparing ‘methylclock’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘methylclock.Rmd’ using rmarkdown

Quitting from methylclock.Rmd:648-651 [get_geo_109446]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'methylclock.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [ftp.ncbi.nlm.nih.gov]:
Operation timed out after 300000 milliseconds with 123527646 out of 142239745 bytes received
--- failed re-building ‘methylclock.Rmd’

SUMMARY: processing the following file failed:
  ‘methylclock.Rmd’

Error: Vignette re-building failed.
Execution halted