Till Soerensen
| Snapshot Date: 2025-10-17 13:45 -0400 (Fri, 17 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 9098b87 |
| git_last_commit_date: 2025-09-18 03:52:53 -0400 (Thu, 18 Sep 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-18 12:07 -0400 (Sat, 18 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4887 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4677 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4622 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4632 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1047/2353 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.41.2 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.41.2 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-10-17 02:00:25 -0000 (Fri, 17 Oct 2025) |
| EndedAt: 2025-10-17 02:03:55 -0000 (Fri, 17 Oct 2025) |
| EllapsedTime: 210.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=143<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 26 iterations
cluster 1(N=75) has 2 sub-cluster at 2 (7), ICL=105<>30
split 1 into 2 clusters
cluster 2(N=228) has 2 sub-cluster at 2 (12), ICL=28<>30
cluster 1(N=75) has 2 sub-cluster at 2 (7), ICL=0<>30
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->3 N=605
EM 3 takes 0 mins, 8 iterations
cluster 3(N=439) has 3 sub-cluster at 3 (6), ICL=92<>34
split 3 into 3 clusters
cluster 2(N=101) has 2 sub-cluster at 2 (9), ICL=67<>34
split 2 into 2 clusters
cluster 1(N=65) has 3 sub-cluster at 3 (17), ICL=26<>34
cluster 1(N=65) has 3 sub-cluster at 3 (17), ICL=0<>34
Model Refinement takes 0.033 mins(max 2: 0.017)
Fit Model 3 of (6/10) K=3->6 N=1210
EM 6 takes 0 mins, 8 iterations
cluster 1(N=139) has 2 sub-cluster at 2 (16), ICL=43<>37
split 1 into 2 clusters
cluster 5(N=58) has 3 sub-cluster at 3 (7), ICL=38<>37
split 5 into 3 clusters
cluster 2(N=126) has 6 sub-cluster at 8 (34), ICL=17<>37
cluster 6(N=70) has 6 sub-cluster at 6 (17), ICL=16<>37
cluster 3(N=60) has 2 sub-cluster at 2 (100), ICL=7.1<>37
cluster 1(N=139) has 2 sub-cluster at 2 (16), ICL=0<>37
Model Refinement takes 0.083 mins(max 4: 0.033)
Fit Model 4 of (6/10) K=6->9 N=2420
EM 9 takes 0 mins, 15 iterations
cluster 3(N=283) has 2 sub-cluster at 2 (6), ICL=27<>41
cluster 4(N=96) has 2 sub-cluster at 2 (8), ICL=22<>41
cluster 8(N=31) has 3 sub-cluster at 3 (13), ICL=22<>41
cluster 9(N=136) has 5 sub-cluster at 5 (25), ICL=18<>41
cluster 7(N=73) has 3 sub-cluster at 4 (28), ICL=16<>41
cluster 2(N=215) has 7 sub-cluster at 8 (28), ICL=13<>41
cluster 2(N=215) has 7 sub-cluster at 8 (28), ICL=0<>41
Model Refinement takes 0.15 mins(max 5: 0.05)
Fit Model 5 of (6/10) K=9->9 N=4841
EM 9 takes 0 mins, 11 iterations
cluster 9(N=291) has 3 sub-cluster at 3 (13), ICL=33<>45
cluster 8(N=83) has 3 sub-cluster at 3 (19), ICL=31<>45
cluster 4(N=205) has 4 sub-cluster at 4 (20), ICL=24<>45
cluster 3(N=545) has 2 sub-cluster at 2 (8), ICL=14<>45
cluster 6(N=36) has 2 sub-cluster at 3 (20), ICL=12<>45
cluster 7(N=146) has 3 sub-cluster at 3 (36), ICL=12<>45
cluster 2(N=445) has 4 sub-cluster at 4 (20), ICL=9.9<>45
cluster 2(N=445) has 4 sub-cluster at 4 (20), ICL=0<>45
Model Refinement takes 0.17 mins(max 5: 0.05)
Fit Model 6 of (6/10) K=9->9 N=9682
EM 9 takes 0.017 mins, 4 iterations
cluster 9(N=556) has 3 sub-cluster at 3 (11), ICL=65<>48
split 9 into 3 clusters
cluster 2(N=916) has 3 sub-cluster at 3 (10), ICL=51<>48
split 2 into 3 clusters
cluster 8(N=159) has 4 sub-cluster at 4 (20), ICL=42<>48
cluster 4(N=392) has 3 sub-cluster at 3 (33), ICL=38<>48
cluster 3(N=1119) has 2 sub-cluster at 2 (6), ICL=36<>48
cluster 6(N=75) has 3 sub-cluster at 4 (41), ICL=6.3<>48
cluster 7(N=314) has 2 sub-cluster at 2 (8), ICL=6.2<>48
cluster 2(N=916) has 3 sub-cluster at 3 (10), ICL=0<>48
Model Refinement takes 0.22 mins(max 5: 0.067)
Fit Model 7 of (6/10) K=9->13 N=9682
EM 13 takes 0 mins, 3 iterations
cluster 10(N=159) has 4 sub-cluster at 4 (16), ICL=42<>48
cluster 5(N=1120) has 2 sub-cluster at 2 (6), ICL=42<>48
cluster 6(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 13(N=75) has 2 sub-cluster at 2 (11), ICL=18<>48
cluster 8(N=74) has 3 sub-cluster at 4 (46), ICL=13<>48
cluster 11(N=356) has 8 sub-cluster at 8 (48), ICL=11<>48
cluster 12(N=181) has 5 sub-cluster at 6 (34), ICL=8.7<>48
cluster 9(N=308) has 2 sub-cluster at 2 (7), ICL=6.4<>48
cluster 4(N=52) has 2 sub-cluster at 2 (100), ICL=5.5<>48
cluster 4(N=52) has 2 sub-cluster at 2 (100), ICL=0<>48
Model Refinement takes 0.28 mins(max 7: 0.067)
Fit Model 8 of (6/10) K=13->13 N=9682
EM 13 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=180<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 2(N=84) has 3 sub-cluster at 3 (10), ICL=93<>25
split 2 into 3 clusters
cluster 1(N=220) has 2 sub-cluster at 2 (8), ICL=19<>25
cluster 1(N=220) has 2 sub-cluster at 2 (8), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 10 iterations
cluster 2(N=64) has 2 sub-cluster at 2 (15), ICL=38<>28
split 2 into 2 clusters
cluster 1(N=424) has 2 sub-cluster at 2 (6), ICL=31<>28
split 1 into 2 clusters
cluster 3(N=69) has 4 sub-cluster at 5 (11), ICL=18<>28
cluster 4(N=55) has 2 sub-cluster at 2 (100), ICL=12<>28
cluster 1(N=424) has 2 sub-cluster at 2 (6), ICL=0<>28
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 6 takes 0 mins, 10 iterations
cluster 6(N=112) has 2 sub-cluster at 2 (9), ICL=36<>31
split 6 into 2 clusters
cluster 2(N=50) has 3 sub-cluster at 3 (7), ICL=26<>31
cluster 5(N=126) has 4 sub-cluster at 4 (29), ICL=22<>31
cluster 4(N=61) has 4 sub-cluster at 4 (51), ICL=19<>31
cluster 3(N=75) has 2 sub-cluster at 2 (14), ICL=14<>31
cluster 1(N=799) has 3 sub-cluster at 3 (11), ICL=0.39<>31
cluster 1(N=799) has 3 sub-cluster at 3 (11), ICL=0<>31
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=6->7 N=2420
EM 7 takes 0 mins, 6 iterations
cluster 2(N=113) has 2 sub-cluster at 2 (6), ICL=59<>34
split 2 into 2 clusters
cluster 5(N=278) has 2 sub-cluster at 2 (7), ICL=41<>34
split 5 into 2 clusters
cluster 7(N=23) has 2 sub-cluster at 2 (100), ICL=32<>34
cluster 3(N=130) has 5 sub-cluster at 5 (22), ICL=27<>34
cluster 6(N=214) has 8 sub-cluster at 8 (38), ICL=13<>34
cluster 4(N=88) has 2 sub-cluster at 2 (11), ICL=11<>34
cluster 2(N=113) has 2 sub-cluster at 2 (6), ICL=0<>34
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=7->9 N=4841
EM 9 takes 0 mins, 6 iterations
cluster 3(N=91) has 2 sub-cluster at 2 (6), ICL=57<>37
split 3 into 2 clusters
cluster 5(N=187) has 2 sub-cluster at 2 (9), ICL=32<>37
cluster 4(N=291) has 3 sub-cluster at 3 (9), ICL=26<>37
cluster 7(N=178) has 5 sub-cluster at 5 (68), ICL=19<>37
cluster 8(N=454) has 6 sub-cluster at 6 (28), ICL=16<>37
cluster 9(N=31) has 2 sub-cluster at 2 (5), ICL=14<>37
cluster 2(N=150) has 4 sub-cluster at 5 (47), ICL=13<>37
cluster 6(N=447) has 7 sub-cluster at 8 (15), ICL=2.5<>37
cluster 2(N=150) has 4 sub-cluster at 5 (47), ICL=0<>37
Model Refinement takes 0.18 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=9->10 N=9682
EM 10 takes 0.017 mins, 5 iterations
cluster 5(N=557) has 3 sub-cluster at 3 (11), ICL=69<>40
split 5 into 3 clusters
cluster 6(N=392) has 2 sub-cluster at 2 (13), ICL=43<>40
split 6 into 2 clusters
cluster 9(N=908) has 3 sub-cluster at 3 (12), ICL=33<>40
cluster 10(N=60) has 2 sub-cluster at 2 (14), ICL=32<>40
cluster 3(N=122) has 3 sub-cluster at 3 (28), ICL=29<>40
cluster 8(N=379) has 4 sub-cluster at 5 (22), ICL=16<>40
cluster 4(N=76) has 4 sub-cluster at 5 (16), ICL=14<>40
cluster 1(N=6237) has 4 sub-cluster at 4 (10), ICL=9<>40
cluster 2(N=314) has 7 sub-cluster at 8 (57), ICL=8.2<>40
cluster 1(N=6237) has 4 sub-cluster at 4 (10), ICL=0<>40
Model Refinement takes 0.25 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=10->13 N=9682
EM 13 takes 0 mins, 4 iterations
cluster 12(N=898) has 2 sub-cluster at 2 (34), ICL=57<>40
split 12 into 2 clusters
cluster 3(N=123) has 2 sub-cluster at 2 (9), ICL=32<>40
cluster 13(N=60) has 2 sub-cluster at 2 (9), ICL=31<>40
cluster 7(N=87) has 3 sub-cluster at 3 (10), ICL=20<>40
cluster 11(N=390) has 2 sub-cluster at 3 (12), ICL=18<>40
cluster 8(N=221) has 5 sub-cluster at 6 (39), ICL=17<>40
cluster 5(N=363) has 7 sub-cluster at 7 (30), ICL=16<>40
cluster 6(N=180) has 6 sub-cluster at 6 (43), ICL=13<>40
cluster 9(N=217) has 7 sub-cluster at 8 (20), ICL=12<>40
cluster 2(N=307) has 2 sub-cluster at 2 (6), ICL=8.7<>40
cluster 4(N=75) has 3 sub-cluster at 4 (10), ICL=6.5<>40
cluster 2(N=307) has 2 sub-cluster at 2 (6), ICL=0<>40
Model Refinement takes 0.3 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=13->14 N=9682
EM 14 takes 0 mins, 3 iterations
cluster 14(N=61) has 2 sub-cluster at 2 (9), ICL=33<>40
cluster 3(N=123) has 2 sub-cluster at 2 (9), ICL=32<>40
cluster 11(N=395) has 3 sub-cluster at 4 (34), ICL=25<>40
cluster 7(N=86) has 5 sub-cluster at 5 (26), ICL=20<>40
cluster 5(N=363) has 8 sub-cluster at 8 (30), ICL=19<>40
cluster 8(N=221) has 6 sub-cluster at 8 (49), ICL=17<>40
cluster 6(N=173) has 4 sub-cluster at 5 (18), ICL=14<>40
cluster 9(N=220) has 6 sub-cluster at 7 (38), ICL=13<>40
cluster 2(N=308) has 2 sub-cluster at 2 (7), ICL=9<>40
cluster 4(N=75) has 3 sub-cluster at 4 (10), ICL=6.6<>40
cluster 12(N=399) has 6 sub-cluster at 7 (42), ICL=1.2<>40
cluster 2(N=308) has 2 sub-cluster at 2 (7), ICL=0<>40
Model Refinement takes 0.32 mins(max 1: 0.067)
Fit Model 9 of (6/10) K=14->14 N=9682
EM 14 takes 0 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.4 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted