Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-10-18 12:07 -0400 (Sat, 18 Oct 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4887 |
lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4677 |
kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4622 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4632 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1047/2353 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
immunoClust 1.41.2 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: immunoClust |
Version: 1.41.2 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
StartedAt: 2025-10-17 02:00:25 -0000 (Fri, 17 Oct 2025) |
EndedAt: 2025-10-17 02:03:55 -0000 (Fri, 17 Oct 2025) |
EllapsedTime: 210.1 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust ### ############################################################################## ############################################################################## * checking for file ‘immunoClust/DESCRIPTION’ ... OK * preparing ‘immunoClust’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘immunoClust.Rnw’ using Sweave Loading required package: flowCore filtered from above:318 filtered from below:0 cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=143<>26 split 1 into 2 clusters cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=0<>26 Model Refinement takes 0.017 mins(max 1: 0.017) Fit Model 1 of (6/10) K=1->2 N=302 EM 2 takes 0 mins, 26 iterations cluster 1(N=75) has 2 sub-cluster at 2 (7), ICL=105<>30 split 1 into 2 clusters cluster 2(N=228) has 2 sub-cluster at 2 (12), ICL=28<>30 cluster 1(N=75) has 2 sub-cluster at 2 (7), ICL=0<>30 Model Refinement takes 0.017 mins(max 1: 0.017) Fit Model 2 of (6/10) K=2->3 N=605 EM 3 takes 0 mins, 8 iterations cluster 3(N=439) has 3 sub-cluster at 3 (6), ICL=92<>34 split 3 into 3 clusters cluster 2(N=101) has 2 sub-cluster at 2 (9), ICL=67<>34 split 2 into 2 clusters cluster 1(N=65) has 3 sub-cluster at 3 (17), ICL=26<>34 cluster 1(N=65) has 3 sub-cluster at 3 (17), ICL=0<>34 Model Refinement takes 0.033 mins(max 2: 0.017) Fit Model 3 of (6/10) K=3->6 N=1210 EM 6 takes 0 mins, 8 iterations cluster 1(N=139) has 2 sub-cluster at 2 (16), ICL=43<>37 split 1 into 2 clusters cluster 5(N=58) has 3 sub-cluster at 3 (7), ICL=38<>37 split 5 into 3 clusters cluster 2(N=126) has 6 sub-cluster at 8 (34), ICL=17<>37 cluster 6(N=70) has 6 sub-cluster at 6 (17), ICL=16<>37 cluster 3(N=60) has 2 sub-cluster at 2 (100), ICL=7.1<>37 cluster 1(N=139) has 2 sub-cluster at 2 (16), ICL=0<>37 Model Refinement takes 0.083 mins(max 4: 0.033) Fit Model 4 of (6/10) K=6->9 N=2420 EM 9 takes 0 mins, 15 iterations cluster 3(N=283) has 2 sub-cluster at 2 (6), ICL=27<>41 cluster 4(N=96) has 2 sub-cluster at 2 (8), ICL=22<>41 cluster 8(N=31) has 3 sub-cluster at 3 (13), ICL=22<>41 cluster 9(N=136) has 5 sub-cluster at 5 (25), ICL=18<>41 cluster 7(N=73) has 3 sub-cluster at 4 (28), ICL=16<>41 cluster 2(N=215) has 7 sub-cluster at 8 (28), ICL=13<>41 cluster 2(N=215) has 7 sub-cluster at 8 (28), ICL=0<>41 Model Refinement takes 0.15 mins(max 5: 0.05) Fit Model 5 of (6/10) K=9->9 N=4841 EM 9 takes 0 mins, 11 iterations cluster 9(N=291) has 3 sub-cluster at 3 (13), ICL=33<>45 cluster 8(N=83) has 3 sub-cluster at 3 (19), ICL=31<>45 cluster 4(N=205) has 4 sub-cluster at 4 (20), ICL=24<>45 cluster 3(N=545) has 2 sub-cluster at 2 (8), ICL=14<>45 cluster 6(N=36) has 2 sub-cluster at 3 (20), ICL=12<>45 cluster 7(N=146) has 3 sub-cluster at 3 (36), ICL=12<>45 cluster 2(N=445) has 4 sub-cluster at 4 (20), ICL=9.9<>45 cluster 2(N=445) has 4 sub-cluster at 4 (20), ICL=0<>45 Model Refinement takes 0.17 mins(max 5: 0.05) Fit Model 6 of (6/10) K=9->9 N=9682 EM 9 takes 0.017 mins, 4 iterations cluster 9(N=556) has 3 sub-cluster at 3 (11), ICL=65<>48 split 9 into 3 clusters cluster 2(N=916) has 3 sub-cluster at 3 (10), ICL=51<>48 split 2 into 3 clusters cluster 8(N=159) has 4 sub-cluster at 4 (20), ICL=42<>48 cluster 4(N=392) has 3 sub-cluster at 3 (33), ICL=38<>48 cluster 3(N=1119) has 2 sub-cluster at 2 (6), ICL=36<>48 cluster 6(N=75) has 3 sub-cluster at 4 (41), ICL=6.3<>48 cluster 7(N=314) has 2 sub-cluster at 2 (8), ICL=6.2<>48 cluster 2(N=916) has 3 sub-cluster at 3 (10), ICL=0<>48 Model Refinement takes 0.22 mins(max 5: 0.067) Fit Model 7 of (6/10) K=9->13 N=9682 EM 13 takes 0 mins, 3 iterations cluster 10(N=159) has 4 sub-cluster at 4 (16), ICL=42<>48 cluster 5(N=1120) has 2 sub-cluster at 2 (6), ICL=42<>48 cluster 6(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48 cluster 13(N=75) has 2 sub-cluster at 2 (11), ICL=18<>48 cluster 8(N=74) has 3 sub-cluster at 4 (46), ICL=13<>48 cluster 11(N=356) has 8 sub-cluster at 8 (48), ICL=11<>48 cluster 12(N=181) has 5 sub-cluster at 6 (34), ICL=8.7<>48 cluster 9(N=308) has 2 sub-cluster at 2 (7), ICL=6.4<>48 cluster 4(N=52) has 2 sub-cluster at 2 (100), ICL=5.5<>48 cluster 4(N=52) has 2 sub-cluster at 2 (100), ICL=0<>48 Model Refinement takes 0.28 mins(max 7: 0.067) Fit Model 8 of (6/10) K=13->13 N=9682 EM 13 takes 0.017 mins, 3 iterations Process completed at8 Major Iteration (Trans) (6/4) takes 1.1 mins filtered from above:318 filtered from below:0 cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=180<>22 split 1 into 2 clusters cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=0<>22 Model Refinement takes 0.017 mins(max 1: 0.017) Fit Model 1 of (6/10) K=1->2 N=302 EM 2 takes 0 mins, 8 iterations cluster 2(N=84) has 3 sub-cluster at 3 (10), ICL=93<>25 split 2 into 3 clusters cluster 1(N=220) has 2 sub-cluster at 2 (8), ICL=19<>25 cluster 1(N=220) has 2 sub-cluster at 2 (8), ICL=0<>25 Model Refinement takes 0.033 mins(max 1: 0.017) Fit Model 2 of (6/10) K=2->4 N=605 EM 4 takes 0 mins, 10 iterations cluster 2(N=64) has 2 sub-cluster at 2 (15), ICL=38<>28 split 2 into 2 clusters cluster 1(N=424) has 2 sub-cluster at 2 (6), ICL=31<>28 split 1 into 2 clusters cluster 3(N=69) has 4 sub-cluster at 5 (11), ICL=18<>28 cluster 4(N=55) has 2 sub-cluster at 2 (100), ICL=12<>28 cluster 1(N=424) has 2 sub-cluster at 2 (6), ICL=0<>28 Model Refinement takes 0.067 mins(max 1: 0.033) Fit Model 3 of (6/10) K=4->6 N=1210 EM 6 takes 0 mins, 10 iterations cluster 6(N=112) has 2 sub-cluster at 2 (9), ICL=36<>31 split 6 into 2 clusters cluster 2(N=50) has 3 sub-cluster at 3 (7), ICL=26<>31 cluster 5(N=126) has 4 sub-cluster at 4 (29), ICL=22<>31 cluster 4(N=61) has 4 sub-cluster at 4 (51), ICL=19<>31 cluster 3(N=75) has 2 sub-cluster at 2 (14), ICL=14<>31 cluster 1(N=799) has 3 sub-cluster at 3 (11), ICL=0.39<>31 cluster 1(N=799) has 3 sub-cluster at 3 (11), ICL=0<>31 Model Refinement takes 0.083 mins(max 1: 0.033) Fit Model 4 of (6/10) K=6->7 N=2420 EM 7 takes 0 mins, 6 iterations cluster 2(N=113) has 2 sub-cluster at 2 (6), ICL=59<>34 split 2 into 2 clusters cluster 5(N=278) has 2 sub-cluster at 2 (7), ICL=41<>34 split 5 into 2 clusters cluster 7(N=23) has 2 sub-cluster at 2 (100), ICL=32<>34 cluster 3(N=130) has 5 sub-cluster at 5 (22), ICL=27<>34 cluster 6(N=214) has 8 sub-cluster at 8 (38), ICL=13<>34 cluster 4(N=88) has 2 sub-cluster at 2 (11), ICL=11<>34 cluster 2(N=113) has 2 sub-cluster at 2 (6), ICL=0<>34 Model Refinement takes 0.13 mins(max 1: 0.05) Fit Model 5 of (6/10) K=7->9 N=4841 EM 9 takes 0 mins, 6 iterations cluster 3(N=91) has 2 sub-cluster at 2 (6), ICL=57<>37 split 3 into 2 clusters cluster 5(N=187) has 2 sub-cluster at 2 (9), ICL=32<>37 cluster 4(N=291) has 3 sub-cluster at 3 (9), ICL=26<>37 cluster 7(N=178) has 5 sub-cluster at 5 (68), ICL=19<>37 cluster 8(N=454) has 6 sub-cluster at 6 (28), ICL=16<>37 cluster 9(N=31) has 2 sub-cluster at 2 (5), ICL=14<>37 cluster 2(N=150) has 4 sub-cluster at 5 (47), ICL=13<>37 cluster 6(N=447) has 7 sub-cluster at 8 (15), ICL=2.5<>37 cluster 2(N=150) has 4 sub-cluster at 5 (47), ICL=0<>37 Model Refinement takes 0.18 mins(max 1: 0.05) Fit Model 6 of (6/10) K=9->10 N=9682 EM 10 takes 0.017 mins, 5 iterations cluster 5(N=557) has 3 sub-cluster at 3 (11), ICL=69<>40 split 5 into 3 clusters cluster 6(N=392) has 2 sub-cluster at 2 (13), ICL=43<>40 split 6 into 2 clusters cluster 9(N=908) has 3 sub-cluster at 3 (12), ICL=33<>40 cluster 10(N=60) has 2 sub-cluster at 2 (14), ICL=32<>40 cluster 3(N=122) has 3 sub-cluster at 3 (28), ICL=29<>40 cluster 8(N=379) has 4 sub-cluster at 5 (22), ICL=16<>40 cluster 4(N=76) has 4 sub-cluster at 5 (16), ICL=14<>40 cluster 1(N=6237) has 4 sub-cluster at 4 (10), ICL=9<>40 cluster 2(N=314) has 7 sub-cluster at 8 (57), ICL=8.2<>40 cluster 1(N=6237) has 4 sub-cluster at 4 (10), ICL=0<>40 Model Refinement takes 0.25 mins(max 1: 0.067) Fit Model 7 of (6/10) K=10->13 N=9682 EM 13 takes 0 mins, 4 iterations cluster 12(N=898) has 2 sub-cluster at 2 (34), ICL=57<>40 split 12 into 2 clusters cluster 3(N=123) has 2 sub-cluster at 2 (9), ICL=32<>40 cluster 13(N=60) has 2 sub-cluster at 2 (9), ICL=31<>40 cluster 7(N=87) has 3 sub-cluster at 3 (10), ICL=20<>40 cluster 11(N=390) has 2 sub-cluster at 3 (12), ICL=18<>40 cluster 8(N=221) has 5 sub-cluster at 6 (39), ICL=17<>40 cluster 5(N=363) has 7 sub-cluster at 7 (30), ICL=16<>40 cluster 6(N=180) has 6 sub-cluster at 6 (43), ICL=13<>40 cluster 9(N=217) has 7 sub-cluster at 8 (20), ICL=12<>40 cluster 2(N=307) has 2 sub-cluster at 2 (6), ICL=8.7<>40 cluster 4(N=75) has 3 sub-cluster at 4 (10), ICL=6.5<>40 cluster 2(N=307) has 2 sub-cluster at 2 (6), ICL=0<>40 Model Refinement takes 0.3 mins(max 1: 0.067) Fit Model 8 of (6/10) K=13->14 N=9682 EM 14 takes 0 mins, 3 iterations cluster 14(N=61) has 2 sub-cluster at 2 (9), ICL=33<>40 cluster 3(N=123) has 2 sub-cluster at 2 (9), ICL=32<>40 cluster 11(N=395) has 3 sub-cluster at 4 (34), ICL=25<>40 cluster 7(N=86) has 5 sub-cluster at 5 (26), ICL=20<>40 cluster 5(N=363) has 8 sub-cluster at 8 (30), ICL=19<>40 cluster 8(N=221) has 6 sub-cluster at 8 (49), ICL=17<>40 cluster 6(N=173) has 4 sub-cluster at 5 (18), ICL=14<>40 cluster 9(N=220) has 6 sub-cluster at 7 (38), ICL=13<>40 cluster 2(N=308) has 2 sub-cluster at 2 (7), ICL=9<>40 cluster 4(N=75) has 3 sub-cluster at 4 (10), ICL=6.6<>40 cluster 12(N=399) has 6 sub-cluster at 7 (42), ICL=1.2<>40 cluster 2(N=308) has 2 sub-cluster at 2 (7), ICL=0<>40 Model Refinement takes 0.32 mins(max 1: 0.067) Fit Model 9 of (6/10) K=14->14 N=9682 EM 14 takes 0 mins, 3 iterations Process completed at9 Major Iteration (Trans) (6/4) takes 1.4 mins Fit Model 1 of 10 with 8 clusters => results in 8 clusters Fit Model 2 of 10 with 21 clusters => results in 13 clusters Fit Model 3 of 10 with 23 clusters => results in 19 clusters Fit Model 4 of 10 with 26 clusters => results in 21 clusters Fit Model 5 of 10 with 25 clusters => results in 21 clusters Error: processing vignette 'immunoClust.Rnw' failed with diagnostics: Running 'texi2dvi' on 'immunoClust.tex' failed. LaTeX errors: ! LaTeX Error: File `inputenx.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.15 ^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘immunoClust.Rnw’ SUMMARY: processing the following file failed: ‘immunoClust.Rnw’ Error: Vignette re-building failed. Execution halted