Till Soerensen
| Snapshot Date: 2025-12-01 13:45 -0500 (Mon, 01 Dec 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_22 |
| git_last_commit: 3c4237c |
| git_last_commit_date: 2025-10-29 10:24:29 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-12-04 12:02 -0500 (Thu, 04 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4878 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4624 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4669 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1051/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.42.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.42.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-12-02 02:24:34 -0000 (Tue, 02 Dec 2025) |
| EndedAt: 2025-12-02 02:28:04 -0000 (Tue, 02 Dec 2025) |
| EllapsedTime: 210.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (13), ICL=154<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (13), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 1(N=84) has 3 sub-cluster at 3 (7), ICL=88<>30
split 1 into 3 clusters
cluster 2(N=219) has 2 sub-cluster at 2 (6), ICL=30<>30
split 2 into 2 clusters
cluster 1(N=84) has 3 sub-cluster at 3 (7), ICL=0<>30
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 9 iterations
cluster 5(N=54) has 2 sub-cluster at 2 (7), ICL=39<>34
split 5 into 2 clusters
cluster 2(N=65) has 4 sub-cluster at 5 (24), ICL=21<>34
cluster 3(N=28) has 3 sub-cluster at 3 (21), ICL=16<>34
cluster 4(N=398) has 8 sub-cluster at 8 (20), ICL=6.3<>34
cluster 1(N=70) has 2 sub-cluster at 2 (9), ICL=5.5<>34
cluster 1(N=70) has 2 sub-cluster at 2 (9), ICL=0<>34
Model Refinement takes 0.067 mins(max 2: 0.017)
Fit Model 3 of (6/10) K=5->6 N=1210
EM 6 takes 0 mins, 9 iterations
cluster 2(N=117) has 2 sub-cluster at 2 (10), ICL=37<>37
cluster 5(N=50) has 4 sub-cluster at 4 (12), ICL=36<>37
cluster 3(N=48) has 2 sub-cluster at 2 (100), ICL=32<>37
cluster 6(N=67) has 2 sub-cluster at 2 (11), ICL=13<>37
cluster 1(N=141) has 8 sub-cluster at 8 (21), ICL=11<>37
cluster 1(N=141) has 8 sub-cluster at 8 (21), ICL=0<>37
Model Refinement takes 0.067 mins(max 4: 0.033)
Fit Model 4 of (6/10) K=6->6 N=2420
EM 6 takes 0 mins, 12 iterations
cluster 5(N=110) has 3 sub-cluster at 3 (14), ICL=58<>41
split 5 into 3 clusters
cluster 2(N=225) has 2 sub-cluster at 2 (6), ICL=49<>41
split 2 into 2 clusters
cluster 6(N=143) has 4 sub-cluster at 4 (21), ICL=21<>41
cluster 1(N=293) has 2 sub-cluster at 2 (8), ICL=20<>41
cluster 3(N=91) has 7 sub-cluster at 7 (67), ICL=18<>41
cluster 1(N=293) has 2 sub-cluster at 2 (8), ICL=0<>41
Model Refinement takes 0.13 mins(max 4: 0.05)
Fit Model 5 of (6/10) K=6->9 N=4841
EM 9 takes 0 mins, 8 iterations
cluster 6(N=59) has 6 sub-cluster at 6 (86), ICL=39<>45
cluster 1(N=594) has 2 sub-cluster at 2 (6), ICL=30<>45
cluster 4(N=204) has 3 sub-cluster at 3 (13), ICL=27<>45
cluster 3(N=29) has 2 sub-cluster at 2 (11), ICL=23<>45
cluster 9(N=272) has 3 sub-cluster at 3 (6), ICL=20<>45
cluster 8(N=150) has 3 sub-cluster at 3 (15), ICL=3.6<>45
cluster 2(N=452) has 8 sub-cluster at 8 (34), ICL=2.3<>45
cluster 1(N=594) has 2 sub-cluster at 2 (6), ICL=0<>45
Model Refinement takes 0.18 mins(max 5: 0.067)
Fit Model 6 of (6/10) K=9->9 N=9682
EM 9 takes 0.017 mins, 9 iterations
cluster 9(N=557) has 3 sub-cluster at 3 (11), ICL=65<>48
split 9 into 3 clusters
cluster 1(N=1121) has 2 sub-cluster at 2 (9), ICL=48<>48
split 1 into 2 clusters
cluster 6(N=153) has 4 sub-cluster at 4 (17), ICL=42<>48
cluster 4(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 3(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 2(N=908) has 3 sub-cluster at 3 (12), ICL=29<>48
cluster 7(N=77) has 4 sub-cluster at 5 (42), ICL=3.7<>48
cluster 1(N=1121) has 2 sub-cluster at 2 (9), ICL=0<>48
Model Refinement takes 0.23 mins(max 5: 0.067)
Fit Model 7 of (6/10) K=9->12 N=9682
EM 12 takes 0.017 mins, 7 iterations
cluster 5(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 4(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 3(N=898) has 3 sub-cluster at 3 (9), ICL=29<>48
cluster 7(N=122) has 3 sub-cluster at 3 (28), ICL=26<>48
cluster 12(N=88) has 4 sub-cluster at 4 (46), ICL=22<>48
cluster 2(N=425) has 2 sub-cluster at 2 (6), ICL=19<>48
cluster 10(N=362) has 2 sub-cluster at 2 (7), ICL=12<>48
cluster 11(N=173) has 4 sub-cluster at 5 (21), ICL=11<>48
cluster 9(N=309) has 2 sub-cluster at 2 (6), ICL=5.8<>48
cluster 8(N=75) has 3 sub-cluster at 4 (15), ICL=4.3<>48
cluster 2(N=425) has 2 sub-cluster at 2 (6), ICL=0<>48
Model Refinement takes 0.27 mins(max 6: 0.067)
Fit Model 8 of (6/10) K=12->12 N=9682
EM 12 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 3 sub-cluster at 3 (6), ICL=169<>22
split 1 into 3 clusters
cluster 1(N=151) has 3 sub-cluster at 3 (6), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->3 N=302
EM 3 takes 0 mins, 9 iterations
cluster 3(N=62) has 2 sub-cluster at 2 (5), ICL=54<>25
split 3 into 2 clusters
cluster 1(N=206) has 2 sub-cluster at 2 (6), ICL=23<>25
cluster 2(N=34) has 2 sub-cluster at 2 (5), ICL=6.8<>25
cluster 1(N=206) has 2 sub-cluster at 2 (6), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=3->4 N=605
EM 4 takes 0 mins, 12 iterations
cluster 1(N=422) has 2 sub-cluster at 2 (5), ICL=60<>28
split 1 into 2 clusters
cluster 2(N=63) has 2 sub-cluster at 2 (100), ICL=35<>28
split 2 into 2 clusters
cluster 4(N=52) has 3 sub-cluster at 3 (18), ICL=24<>28
cluster 3(N=71) has 4 sub-cluster at 4 (25), ICL=20<>28
cluster 1(N=422) has 2 sub-cluster at 2 (5), ICL=0<>28
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 5 takes 0 mins, 8 iterations
cluster 3(N=118) has 2 sub-cluster at 2 (7), ICL=49<>31
split 3 into 2 clusters
cluster 5(N=122) has 3 sub-cluster at 3 (14), ICL=47<>31
split 5 into 3 clusters
cluster 2(N=51) has 2 sub-cluster at 2 (14), ICL=30<>31
cluster 4(N=133) has 7 sub-cluster at 7 (38), ICL=23<>31
cluster 2(N=51) has 2 sub-cluster at 2 (14), ICL=0<>31
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=5->8 N=2420
EM 8 takes 0 mins, 14 iterations
cluster 4(N=11) has 2 sub-cluster at 2 (100), ICL=76<>34
split 4 into 2 clusters
cluster 2(N=87) has 2 sub-cluster at 2 (14), ICL=53<>34
split 2 into 2 clusters
cluster 5(N=316) has 2 sub-cluster at 2 (9), ICL=20<>34
cluster 8(N=37) has 3 sub-cluster at 3 (76), ICL=18<>34
cluster 6(N=82) has 5 sub-cluster at 5 (22), ICL=18<>34
cluster 7(N=119) has 5 sub-cluster at 6 (9), ICL=12<>34
cluster 3(N=226) has 2 sub-cluster at 2 (21), ICL=4.2<>34
cluster 2(N=87) has 2 sub-cluster at 2 (14), ICL=0<>34
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=8->10 N=4841
EM 10 takes 0.017 mins, 24 iterations
cluster 2(N=99) has 2 sub-cluster at 2 (6), ICL=61<>37
split 2 into 2 clusters
cluster 7(N=543) has 2 sub-cluster at 2 (6), ICL=32<>37
cluster 9(N=243) has 3 sub-cluster at 3 (12), ICL=25<>37
cluster 3(N=146) has 6 sub-cluster at 6 (13), ICL=24<>37
cluster 10(N=58) has 2 sub-cluster at 2 (6), ICL=21<>37
cluster 8(N=188) has 6 sub-cluster at 6 (43), ICL=17<>37
cluster 4(N=471) has 3 sub-cluster at 3 (15), ICL=12<>37
cluster 2(N=99) has 2 sub-cluster at 2 (6), ICL=0<>37
Model Refinement takes 0.17 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=10->11 N=9682
EM 11 takes 0 mins, 6 iterations
cluster 5(N=907) has 2 sub-cluster at 2 (26), ICL=63<>40
split 5 into 2 clusters
cluster 10(N=505) has 2 sub-cluster at 2 (14), ICL=53<>40
split 10 into 2 clusters
cluster 2(N=153) has 4 sub-cluster at 4 (10), ICL=43<>40
split 2 into 4 clusters
cluster 8(N=1120) has 2 sub-cluster at 2 (5), ICL=39<>40
cluster 6(N=50) has 2 sub-cluster at 2 (100), ICL=39<>40
cluster 11(N=129) has 2 sub-cluster at 2 (13), ICL=37<>40
cluster 9(N=361) has 4 sub-cluster at 4 (30), ICL=16<>40
cluster 3(N=74) has 3 sub-cluster at 4 (47), ICL=16<>40
cluster 4(N=316) has 7 sub-cluster at 8 (32), ICL=6.7<>40
cluster 2(N=153) has 4 sub-cluster at 4 (10), ICL=0<>40
Model Refinement takes 0.25 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=11->16 N=9682
EM 16 takes 0.033 mins, 19 iterations
cluster 11(N=8) has 2 sub-cluster at 2 (100), ICL=51<>40
split 11 into 2 clusters
cluster 3(N=20) has 2 sub-cluster at 2 (100), ICL=48<>40
split 3 into 2 clusters
cluster 16(N=128) has 2 sub-cluster at 2 (8), ICL=41<>40
split 16 into 2 clusters
cluster 10(N=51) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 8(N=401) has 2 sub-cluster at 2 (20), ICL=20<>40
cluster 13(N=366) has 6 sub-cluster at 6 (33), ICL=18<>40
cluster 15(N=375) has 7 sub-cluster at 8 (25), ICL=17<>40
cluster 6(N=74) has 3 sub-cluster at 4 (45), ICL=15<>40
cluster 2(N=91) has 4 sub-cluster at 4 (30), ICL=13<>40
cluster 14(N=168) has 7 sub-cluster at 8 (23), ICL=13<>40
cluster 5(N=258) has 6 sub-cluster at 7 (56), ICL=12<>40
cluster 7(N=313) has 2 sub-cluster at 2 (9), ICL=10<>40
cluster 2(N=91) has 4 sub-cluster at 4 (30), ICL=0<>40
Model Refinement takes 0.28 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=16->19 N=9682
EM 17 takes 0.033 mins, 8 iterations
cluster 10(N=51) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 5(N=351) has 3 sub-cluster at 3 (17), ICL=30<>40
cluster 17(N=76) has 3 sub-cluster at 3 (20), ICL=19<>40
cluster 16(N=82) has 3 sub-cluster at 5 (48), ICL=19<>40
cluster 3(N=13) has 2 sub-cluster at 2 (100), ICL=18<>40
cluster 14(N=169) has 6 sub-cluster at 8 (66), ICL=18<>40
cluster 8(N=398) has 2 sub-cluster at 2 (21), ICL=17<>40
cluster 2(N=95) has 2 sub-cluster at 2 (16), ICL=17<>40
cluster 15(N=363) has 4 sub-cluster at 4 (18), ICL=13<>40
cluster 13(N=339) has 7 sub-cluster at 8 (22), ICL=12<>40
cluster 7(N=309) has 7 sub-cluster at 8 (51), ICL=10<>40
cluster 6(N=75) has 3 sub-cluster at 4 (12), ICL=6.7<>40
cluster 11(N=10) has 2 sub-cluster at 2 (4), ICL=4.9<>40
cluster 9(N=562) has 8 sub-cluster at 8 (32), ICL=1.2<>40
cluster 2(N=95) has 2 sub-cluster at 2 (16), ICL=0<>40
Model Refinement takes 0.32 mins(max 1: 0.067)
Fit Model 9 of (6/10) K=17->17 N=9682
EM 17 takes 0.017 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.5 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted