##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:fcScan.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings fcScan_1.23.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/fcScan.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘fcScan/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fcScan’ version ‘1.23.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fcScan’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL fcScan
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘fcScan’ ...
** this is package ‘fcScan’ version ‘1.23.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fcScan)

R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: 'generics'

The following objects are masked from 'package:base':

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: Seqinfo
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.3002443 secs
Sites in condition do not match sites in data
3  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1092756 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.101434 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1022193 secs
17  entries loaded 
Running getCluster using 1 threads
No cluster found
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1245656 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1060238 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1250007 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1010981 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1001227 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1037538 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09407306 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09103894 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07586837 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07895303 secs
10  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09509706 secs
10  entries loaded 
Running getCluster using 1 threads
No cluster found
10  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1077003 secs
16  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08606696 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09483218 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09673524 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09854555 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1101859 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09864855 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09192514 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1422045 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.106462 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1087096 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1002092 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1019595 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1820779 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.169904 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1665521 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.188375 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1898777 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1240909 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1518855 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.162221 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1185997 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1169789 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1060028 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1453972 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1313708 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1731601 secs


RUNIT TEST PROTOCOL -- Tue Sep  2 06:49:04 2025 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 20.732   1.273  21.997