Mustafa Erhan Ozer
| Snapshot Date: 2025-08-14 13:45 -0400 (Thu, 14 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 7851a60 |
| git_last_commit_date: 2025-04-15 13:15:07 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-15 12:07 -0400 (Fri, 15 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4554 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4535 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2119/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.9.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.9.0 |
| Command: F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings SVMDO_1.9.0.tar.gz |
| StartedAt: 2025-08-15 08:35:27 -0400 (Fri, 15 Aug 2025) |
| EndedAt: 2025-08-15 08:41:34 -0400 (Fri, 15 Aug 2025) |
| EllapsedTime: 366.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings SVMDO_1.9.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.22-bioc/meat/SVMDO.Rcheck'
* using R version 4.5.1 (2025-06-13 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.9.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.22-bioc/R/library' * installing *source* package 'SVMDO' ... ** this is package 'SVMDO' version '1.9.0' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.5.1 (2025-06-13 ucrt) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 2308,6938,1585,5350,596,55970
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3304,6198,81033,942,1802,140803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4547,120227,5160,4702,5617,3074
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23236,4887,6775,7391,4719,122961
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 249,3485,57505,1369,92667,6356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 181,57215,11254,493,221935,7038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5345,708,10135,4684,10159,255738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4012,197322,7381,3586,10059,7037
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3953,2303,89866,9370,718,1514
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23410,84239,129787,2937,2689,57570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5068,9180,3032,388743,63899,23369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6341,55768,718,55644,285,23530
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4137,1339,2572,434,51204,200205
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5191,5122,6648,6908,3920,112817
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 284958,26227,60,56259,80201,7421
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6531,1906,5473,51601,79731,8309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1806,6948,26060,6928,5243,142
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9968,5175,351,2787,2695,116150
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1409,486,156,54539,7098,84701
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6389,2713,2334,1718,57085,104
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10195,2260,2948,6352,5538,7347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3242,3032,4860,63931,84833,5270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 387,5465,64805,51128,4828,5744
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7100,4724,7284,177,326625,1595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4842,3586,85476,10999,293,9507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2984,858,3673,2990,2697,23389
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5346,1468,57001,123263,57048,55788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1489,389692,28234,6908,9575,6582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5009,1585,114548,7274,23474,1361
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 653,1718,2147,347411,9997,92935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2936,10724,55163,509,79783,256471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1409,91949,2805,79944,185,2904
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9374,55670,7840,5346,55644,6906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5730,2593,4285,11231,25821,27344
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 265,10229,2677,582,4683,8659
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10938,51176,2820,26521,4137,5563
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2740,51052,10875,6531,5590,55768
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51167,4915,1027,3034,200186,91942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3375,6582,1489,6535,2984,10379
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3485,4724,574447,5580,7388,10226
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347,4015,1645,51119,407010,54968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 196385,5261,10537,3559,5105,3624
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79644,6770,1717,33,3569,55630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407011,90480,540,1201,4720,91949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7385,57505,57048,2108,3728,84693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9420,2538,5580,10643,493,29968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1149,6582,1591,427,84693,1802
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1584,55283,4015,201305,6720,3030
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9779,509,57104,29947,2903,5214
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2517,149461,30061,26003,57818,7076
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27089,28951,10965,6888,7248,1737
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100506742,8818,203859,3356,2890,1728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 383,8604,1543,330,55630,2052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29928,4128,1185,1672,5230,2646
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2030,1588,1956,5350,10466,253559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7352,406991,6324,407040,293,6716
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2739,5594,1355,2597,54658,3032
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7248,652,169026,868,2876,729230
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 942,185,203859,10229,4860,2745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407009,26060,212,5465,1588,3645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5507,183,3954,80267,1801,28958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2683,1595,2099,131669,5329,128486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51204,5241,336,9370,1806,84334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 768239,7292,10157,57215,5329,8462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1806,407040,4149,10102,10020,3115
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6324,2639,1149,9377,83693,23038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133522,284958,23274,8945,5193,2948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5286,255738,10730,2888,10559,350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2890,7036,338328,3712,2683,27089
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3250,123283,7351,351,22796,23175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81689,4338,384,8862,1716,23600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27344,1591,4724,7384,7351,51293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63874,91949,79087,10165,4851,31
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 463,5515,487,2597,9672,6262
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64689,9382,9971,84239,4118,28951
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3060,126328,152078,353,2147,1906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8841,7841,1968,55034,3600,7284
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6770,7431,868,55526,325,406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56919,3373,93587,2180,5162,9498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123099,6354,728,6584,51081,55699
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54344,7385,4744,10059,23753,55902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7915,585,10891,6390,51,389692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9370,10128,5313,6891,7879,9451
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 348,959,4967,3113,114548,2184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3170,2629,5327,5162,265,22901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 114548,6338,5580,5919,1345,1601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4942,11136,2820,4704,1889,2702
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54600,208,2166,2948,2539,51081
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3658,1019,6382,54344,1641,84317
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1442,57505,84833,8803,5860,4722
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79087,3667,8504,840,6198,952
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2745,5409,2118,3155,632,4338
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 265,2628,3290,79934,55024,5264
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9104,5730,7355,1555,6391,3416
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407006,8642,80222,79633,5538,65080
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5364,389692,84317,51,6564,6582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6351,1277,1890,367,2643,2646
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3636,2946,84902,642489,7386,7385
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11093,1340,2161,25915,84706,2109
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 493753,64131,9429,90624,10,4282
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54902,7498,7084,406982,2581,2588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29929,7026,3293,3991,80331,1489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1369,54809,2166,7172,1956,116228
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64241,5175,54915,125988,91949,407007
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5370,79572,84649,10019,7077,1185
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4709,79934,1282,5792,7035,1019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5372,38,4153,3357,51300,4668
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6649,599,4118,2745,5588,4040
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4668,79776,7274,3624,51422,9429
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3596,2952,5239,55503,57678,1327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6564,5581,1601,175,875,886
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53345,51079,84274,51116,10135,1555
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3032,344905,2948,7407,3073,427
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9868,1906,1444,5370,653,3558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1801,3813,3062,6351,859,941
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
76.71 1.85 79.07
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.74 | 0.14 | 1.61 | |