| Back to Multiple platform build/check report for BioC 3.22: simplified long | 
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This page was generated on 2025-08-15 12:06 -0400 (Fri, 15 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 | 
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4554 | 
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 | 
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 | 
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4535 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 275/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CardinalIO 1.7.0  (landing page) Kylie Ariel Bemis 
 | nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK |  | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK |  | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK |  | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
| To the developers/maintainers of the CardinalIO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CardinalIO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. | 
| Package: CardinalIO | 
| Version: 1.7.0 | 
| Command: rm -rf CardinalIO.buildbin-libdir && mkdir CardinalIO.buildbin-libdir && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL --build --library=CardinalIO.buildbin-libdir CardinalIO_1.7.0.tar.gz | 
| StartedAt: 2025-08-15 09:53:40 -0400 (Fri, 15 Aug 2025) | 
| EndedAt: 2025-08-15 09:54:37 -0400 (Fri, 15 Aug 2025) | 
| EllapsedTime: 57.1 seconds | 
| RetCode: 0 | 
| Status: OK | 
| PackageFile: CardinalIO_1.7.0.zip | 
| PackageFileSize: 1.284 MiB | 
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### Running command:
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###   rm -rf CardinalIO.buildbin-libdir && mkdir CardinalIO.buildbin-libdir && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL --build --library=CardinalIO.buildbin-libdir CardinalIO_1.7.0.tar.gz
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* installing *source* package 'CardinalIO' ...
** this is package 'CardinalIO' version '1.7.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c CardinalIO.cpp -o CardinalIO.o
In file included from CardinalIO.h:5,
                 from CardinalIO.cpp:2:
imzML.h: In member function 'int imzML::get_params(pugi::xml_node, int, SEXP, SEXP)':
imzML.h:348:43: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  348 |                         while ( node && i < count ) {
      |                                         ~~^~~~~~~
imzML.h:369:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  369 |                         if ( i != count )
      |                              ~~^~~~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c init.cpp -o init.o
In file included from CardinalIO.h:5,
                 from init.cpp:3:
imzML.h: In member function 'int imzML::get_params(pugi::xml_node, int, SEXP, SEXP)':
imzML.h:348:43: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  348 |                         while ( node && i < count ) {
      |                                         ~~^~~~~~~
imzML.h:369:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  369 |                         if ( i != count )
      |                              ~~^~~~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c pugixml.cpp -o pugixml.o
pugixml.cpp:2303:23: warning: 'void pugi::impl::{anonymous}::as_utf8_end(char*, size_t, const wchar_t*, size_t)' defined but not used [-Wunused-function]
 2303 |         PUGI__FN void as_utf8_end(char* buffer, size_t size, const wchar_t* str, size_t length)
      |                       ^~~~~~~~~~~
pugixml.cpp:2297:25: warning: 'size_t pugi::impl::{anonymous}::as_utf8_begin(const wchar_t*, size_t)' defined but not used [-Wunused-function]
 2297 |         PUGI__FN size_t as_utf8_begin(const wchar_t* str, size_t length)
      |                         ^~~~~~~~~~~~~
pugixml.cpp:248:25: warning: 'size_t pugi::impl::{anonymous}::strlength_wide(const wchar_t*)' defined but not used [-Wunused-function]
  248 |         PUGI__FN size_t strlength_wide(const wchar_t* s)
      |                         ^~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o CardinalIO.dll tmp.def CardinalIO.o init.o pugixml.o -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.22-bioc/meat/CardinalIO.buildbin-libdir/00LOCK-CardinalIO/00new/CardinalIO/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'CardinalIO' as CardinalIO_1.7.0.zip
* DONE (CardinalIO)